ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40h03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 139 gctggcgacggagctagacgggctgctggccatggcgagggagctggaggcg 190 ||||||||||||||| | | ||||| ||||||||||||||||||||||||| Sbjct: 35831 gctggcgacggagctggcccagctgcgggccatggcgagggagctggaggcg 35882 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 228 gggagctctgctccgcgctggccgcgtccgtcgaccgggccgtgcgcctcgccg 281 ||||||||||| |||||||| |||||||||||||| || | |||||||||| Sbjct: 35911 gggagctctgcagggcgctggcgtcgtccgtcgaccggtccatccgcctcgccg 35964
>tpg|BK005022.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 19 (WRKY19) gene, complete cds Length = 1047 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 139 gctggcgacggagctagacgggctgctggccatggcgagggagctggaggcg 190 ||||||||||||||| | | ||||| ||||||||||||||||||||||||| Sbjct: 42 gctggcgacggagctggcccagctgcgggccatggcgagggagctggaggcg 93 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 228 gggagctctgctccgcgctggccgcgtccgtcgaccgggccgtgcgcctcgccg 281 ||||||||||| |||||||| |||||||||||||| || | |||||||||| Sbjct: 122 gggagctctgcagggcgctggcgtcgtccgtcgaccggtccatccgcctcgccg 175
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 139 gctggcgacggagctagacgggctgctggccatggcgagggagctggaggcg 190 ||||||||||||||| | | ||||| ||||||||||||||||||||||||| Sbjct: 28251589 gctggcgacggagctggcccagctgcgggccatggcgagggagctggaggcg 28251640 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 228 gggagctctgctccgcgctggccgcgtccgtcgaccgggccgtgcgcctcgccg 281 ||||||||||| |||||||| |||||||||||||| || | |||||||||| Sbjct: 28251669 gggagctctgcagggcgctggcgtcgtccgtcgaccggtccatccgcctcgccg 28251722
>dbj|AK108389.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F03, full insert sequence Length = 1040 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 139 gctggcgacggagctagacgggctgctggccatggcgagggagctggaggcg 190 ||||||||||||||| | | ||||| ||||||||||||||||||||||||| Sbjct: 114 gctggcgacggagctggcccagctgcgggccatggcgagggagctggaggcg 165 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 228 gggagctctgctccgcgctggccgcgtccgtcgaccgggccgtgcgcctcgccg 281 ||||||||||| |||||||| |||||||||||||| || | |||||||||| Sbjct: 194 gggagctctgcagggcgctggcgtcgtccgtcgaccggtccatccgcctcgccg 247
>ref|NM_192434.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 981 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Plus Query: 387 tgcaggacctcgggccactcgacgacgggatgagctggaggaa 429 |||||||| |||| || |||||||||||| | ||||||||||| Sbjct: 437 tgcaggacgtcggccccctcgacgacgggttcagctggaggaa 479
>gb|AY676926.1| Oryza sativa (indica cultivar-group) transcription factor WRKY08 (WRKY08) mRNA, complete cds Length = 825 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Plus Query: 387 tgcaggacctcgggccactcgacgacgggatgagctggaggaa 429 |||||||| |||| || |||||||||||| | ||||||||||| Sbjct: 281 tgcaggacgtcggccccctcgacgacgggttcagctggaggaa 323
>tpg|BK005018.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 15 (WRKY15) gene, complete cds Length = 1198 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Plus Query: 387 tgcaggacctcgggccactcgacgacgggatgagctggaggaa 429 |||||||| |||| || |||||||||||| | ||||||||||| Sbjct: 548 tgcaggacgtcggccccctcgacgacgggttcagctggaggaa 590
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Minus Query: 387 tgcaggacctcgggccactcgacgacgggatgagctggaggaa 429 |||||||| |||| || |||||||||||| | ||||||||||| Sbjct: 26681285 tgcaggacgtcggccccctcgacgacgggttcagctggaggaa 26681243 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cctcgccggccgtggccgca 293 |||||||||||||||||||| Sbjct: 38057125 cctcgccggccgtggccgca 38057106 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ggccatggcgagggagctgg 185 |||||||||||||||||||| Sbjct: 1066134 ggccatggcgagggagctgg 1066115
>dbj|AP003212.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05 Length = 161934 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Minus Query: 387 tgcaggacctcgggccactcgacgacgggatgagctggaggaa 429 |||||||| |||| || |||||||||||| | ||||||||||| Sbjct: 154999 tgcaggacgtcggccccctcgacgacgggttcagctggaggaa 154957
>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0694A04 Length = 141476 Score = 46.1 bits (23), Expect = 0.093 Identities = 38/43 (88%) Strand = Plus / Minus Query: 387 tgcaggacctcgggccactcgacgacgggatgagctggaggaa 429 |||||||| |||| || |||||||||||| | ||||||||||| Sbjct: 28377 tgcaggacgtcggccccctcgacgacgggttcagctggaggaa 28335
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 229 ggagctctgctccgcgctggccg 251 ||||||||||||||||||||||| Sbjct: 3688308 ggagctctgctccgcgctggccg 3688330
>ref|NM_020443.2| Homo sapiens neuron navigator 1 (NAV1), mRNA Length = 11365 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 cggcaggaaggcggcagcggcg 355 |||||||||||||||||||||| Sbjct: 437 cggcaggaaggcggcagcggcg 458
>gb|AY043013.1| Homo sapiens neuron navigator 1 (NAV1) mRNA, complete cds Length = 11375 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 cggcaggaaggcggcagcggcg 355 |||||||||||||||||||||| Sbjct: 437 cggcaggaaggcggcagcggcg 458
>gb|AC092800.2| Homo sapiens chromosome 1 clone RP11-25B7, complete sequence Length = 169405 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 334 cggcaggaaggcggcagcggcg 355 |||||||||||||||||||||| Sbjct: 148336 cggcaggaaggcggcagcggcg 148315
>emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene Length = 200033 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 cggcaggaaggcggcagcggcg 355 |||||||||||||||||||||| Sbjct: 85048 cggcaggaaggcggcagcggcg 85069
>ref|XM_535895.2| PREDICTED: Canis familiaris similar to jumonji, AT rich interactive domain 2 protein (LOC478729), mRNA Length = 6500 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 cggcaggaaggcggcagcggc 354 ||||||||||||||||||||| Sbjct: 1676 cggcaggaaggcggcagcggc 1696
>gb|AE008807.1| Salmonella typhimurium LT2, section 111 of 220 of the complete genome Length = 20167 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 ggcaggaaggcggcagcggcg 355 ||||||||||||||||||||| Sbjct: 7906 ggcaggaaggcggcagcggcg 7926
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 181 gctggaggcgcgcgtcgacggcgac 205 ||||||||||| ||||||||||||| Sbjct: 145997 gctggaggcgctcgtcgacggcgac 146021
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gcgcgcgtcgacggcgaccag 208 ||||||||||||||||||||| Sbjct: 14371 gcgcgcgtcgacggcgaccag 14351
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gcgcgcgtcgacggcgaccag 208 ||||||||||||||||||||| Sbjct: 34560249 gcgcgcgtcgacggcgaccag 34560229
>emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence Length = 63897 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gcgcgcgtcgacggcgaccag 208 ||||||||||||||||||||| Sbjct: 13809 gcgcgcgtcgacggcgaccag 13789
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete sequence Length = 104146 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gcgcgcgtcgacggcgaccag 208 ||||||||||||||||||||| Sbjct: 96116 gcgcgcgtcgacggcgaccag 96096
>dbj|AP004629.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT07I01b, TM0091b, complete sequence Length = 59720 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgaga 32 ||||||||||||||||||||| Sbjct: 18252 agagtgagtgtgagagtgaga 18232
>gb|AY639386.1| Streptomyces nodosus oxidoreductase, regulatory protein, hypothetical protein, methyltransferase, transcriptional regulator, AmphRI, AmphRII, AmphRIII, AmphRIV, LysR-type transcriptional regulator, 3-ketoacyl CoA thiolase, CoA transferase subunit A, and CoA transferase subunit B genes, complete cds Length = 20832 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cctcgccggccgtggccgca 293 |||||||||||||||||||| Sbjct: 11194 cctcgccggccgtggccgca 11213
>ref|XM_549936.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1812 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ggccatggcgagggagctgg 185 |||||||||||||||||||| Sbjct: 1356 ggccatggcgagggagctgg 1375
>ref|NM_190127.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 708 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cctcgccggccgtggccgca 293 |||||||||||||||||||| Sbjct: 464 cctcgccggccgtggccgca 445
>gb|AC137923.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0066C04, complete sequence Length = 133944 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccagggcgcgcccggcgccg 224 |||||||||||||||||||| Sbjct: 41755 ccagggcgcgcccggcgccg 41774
>gb|AC116601.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0079B05, complete sequence Length = 159382 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgagaccc 35 |||||||| ||||||||||||||| Sbjct: 159353 agagtgagagtgagagtgagaccc 159330
>gb|AC160765.4| Mus musculus BAC clone RP23-26O24 from chromosome 13, complete sequence Length = 234761 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 22610 agagtgagtgtgagagtgag 22629
>ref|XM_370337.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06834.4) partial mRNA Length = 1362 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 cgcgcccggcgccgccaggg 230 |||||||||||||||||||| Sbjct: 1224 cgcgcccggcgccgccaggg 1243
>gb|AY657452.1| Synthetic construct Peudomonas aeruginosa clone FLH033263.01F PA3813 gene, partial cds Length = 387 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tggcgagggagctggaggcg 190 |||||||||||||||||||| Sbjct: 220 tggcgagggagctggaggcg 201
>gb|AC140443.2| Mus musculus BAC clone RP24-171A23 from chromosome 13, complete sequence Length = 180633 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 50478 agagtgagtgtgagagtgag 50459
>gb|BC045944.1| Danio rerio hypothetical protein LOC402803, mRNA (cDNA clone IMAGE:5412243), partial cds Length = 818 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ctgctggccatggcgaggga 180 |||||||||||||||||||| Sbjct: 518 ctgctggccatggcgaggga 537
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gacgcggcggccacgctggc 144 |||||||||||||||||||| Sbjct: 4999536 gacgcggcggccacgctggc 4999517
>gb|AY426297.1| Bouteloua dimorpha specimen-voucher Columbus 2327 Ts2 (Ts2) gene, partial cds Length = 804 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cggccacgctggcgacggag 151 |||||||||||||||||||| Sbjct: 544 cggccacgctggcgacggag 525
>emb|AL450307.18| Human DNA sequence from clone RP11-245K15 on chromosome 10, complete sequence Length = 159020 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 113530 agagtgagtgtgagagtgag 113549
>emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21 Contains the 3' end of the CROCC gene for ciliary rootlet coiled-coil rootletin (KIAA0445), the MFAP2 gene for microfibrillar-associated protein 2, a novel gene, the gene for a novel protein, the SDHB gene for succinate dehydrogenase complex subunit B iron sulfur (Ip), the PADI2 gene for type II peptidyl arginine deiminase, complete sequence Length = 216497 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 77856 agagtgagtgtgagagtgag 77837 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 77844 agagtgagtgtgagagtgag 77825
>emb|AL049712.12|HSDJ686C3 Human DNA sequence from clone RP4-686C3 on chromosome 20 Contains the IDH3B gene for isocitrate dehydrogenase 3 (NAD+) beta, the NOL5A gene for nucleolar protein 5A (56kDa with KKE/D repeat), the TMC2 gene for transmembrane cochlear expressed protein 2, a novel gene, the RNU56 gene for small nuclear RNA U56, the RNU57 gene for small nuclear RNA U57, the 5' end of one variant of the ZNF343 gene for zinc finger protein 343 and three CpG islands, complete sequence Length = 159272 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 152593 agagtgagtgtgagagtgag 152612
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgagaccc 35 |||||||| ||||||||||||||| Sbjct: 1360641 agagtgagagtgagagtgagaccc 1360618
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ccagggcgcgcccggcgccg 224 |||||||||||||||||||| Sbjct: 121849 ccagggcgcgcccggcgccg 121830
>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7 Contains a novel gene similar to PPP1R14B (protein phosphatase 1, regulatory (inhibitor) subunit 14B), a novel gene similar to BRMS1 (breast cancer metastasis-suppressor 1 (BRMS1), the pc gene for pyruvate carboxylase and three putative novel retrotransposons, complete sequence Length = 192531 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 cacaattcacaagagtgagtgtgagagtgaga 32 |||||||||||| | |||||||||||| |||| Sbjct: 158962 cacaattcacaaaaatgagtgtgagagagaga 158993
>emb|AJ000671.1|SCAJ671 Streptomyces clavuligerus car and claR genes Length = 2687 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 tggaggacgcggcggccacgctgg 143 ||||||||||||||||| |||||| Sbjct: 1617 tggaggacgcggcggcctcgctgg 1640
>emb|AL589871.13| Mouse DNA sequence from clone RP23-391I11 on chromosome 13 Contains the 5' end of the gene for a novel serine (or cysteine) proteinase inhibitor clade B (Serpinb) or serine protease inhibitor (Spi) family member, the Spi12 and Spi6 genes for serine protease inhibitors 12 and 6, the the genes for serine (or cysteine) proteinase inhibitor clade B member 9b (Serpinb9b) and clade B (ovalbumin) member 1b (Serpinb1b), a serine protease inhibitor (Spi) pseudogene and a prohibitin (Phb) pseudogene, complete sequence Length = 217643 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aagagtgagtgtgagagtga 30 |||||||||||||||||||| Sbjct: 168295 aagagtgagtgtgagagtga 168314
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gacgggctgctggccatggc 174 |||||||||||||||||||| Sbjct: 3873779 gacgggctgctggccatggc 3873760
>gb|AC150250.1| Uncultured bacterium zdt-25h12 clone zdt-25h12, complete sequence Length = 41495 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gcggcggccacgctggcgac 147 |||||||||||||||||||| Sbjct: 20389 gcggcggccacgctggcgac 20408
>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence Length = 199776 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gcccggcgccgccagggagc 233 |||||||||||||||||||| Sbjct: 177512 gcccggcgccgccagggagc 177531
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 cggcgaccagggcgcgcccggcgc 222 |||||||||| ||||||||||||| Sbjct: 897456 cggcgaccagcgcgcgcccggcgc 897479
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgagaccc 35 |||||||| ||||||||||||||| Sbjct: 59971 agagtgagagtgagagtgagaccc 59948
>gb|DQ384250.1| Spartina pectinata tasselseed2-like short-chain dehydrogenase/reductase gene, partial cds Length = 738 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cggccacgctggcgacggag 151 |||||||||||||||||||| Sbjct: 403 cggccacgctggcgacggag 384
>gb|DQ384249.1| Eragrostis tef tasselseed2-like short-chain dehydrogenase/reductase gene, partial cds Length = 750 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cggccacgctggcgacggag 151 |||||||||||||||||||| Sbjct: 400 cggccacgctggcgacggag 381
>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes) Length = 355060 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 25697 agagtgagtgtgagagtgag 25716 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agagtgagtgtgagagtgag 31 |||||||||||||||||||| Sbjct: 25685 agagtgagtgtgagagtgag 25704
>gb|AF141932.2|AF141932 Rhizobium leguminosarum bv. trifolii bacteriocin gene cluster, complete sequence Length = 18282 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gtcgacggcgaccagggcgc 213 |||||||||||||||||||| Sbjct: 15546 gtcgacggcgaccagggcgc 15527
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cctcgccggccgtggccgca 293 |||||||||||||||||||| Sbjct: 15901727 cctcgccggccgtggccgca 15901708
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ccagggcgcgcccggcgccg 224 |||||||||||||||||||| Sbjct: 11705971 ccagggcgcgcccggcgccg 11705952
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgagaccc 35 |||||||| ||||||||||||||| Sbjct: 1360641 agagtgagagtgagagtgagaccc 1360618
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccagggcgcgcccggcgccg 224 |||||||||||||||||||| Sbjct: 28289494 ccagggcgcgcccggcgccg 28289513
>gb|AC010722.2|AC010722 Homo sapiens BAC clone RP11-122L9 from Y, complete sequence Length = 160723 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tcacaagagtgagtgtgaga 26 |||||||||||||||||||| Sbjct: 31332 tcacaagagtgagtgtgaga 31351
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 cgcgcgtcgacggcgaccagggcg 212 |||||| ||||||||||||||||| Sbjct: 282932 cgcgcggcgacggcgaccagggcg 282955
>gb|AC002351.2| Homo sapiens 12 PAC RP1-46F2 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 149679 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aagagtgagtgtgagagtga 30 |||||||||||||||||||| Sbjct: 79195 aagagtgagtgtgagagtga 79214
>gb|AE004799.1| Pseudomonas aeruginosa PAO1, section 360 of 529 of the complete genome Length = 14652 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tggcgagggagctggaggcg 190 |||||||||||||||||||| Sbjct: 3674 tggcgagggagctggaggcg 3693
>ref|XM_217270.3| PREDICTED: Rattus norvegicus similar to testis serine protease2 (LOC301027), mRNA Length = 1778 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 cgtgcgcctcgccggccgtggccg 291 ||||||||| |||||||||||||| Sbjct: 91 cgtgcgcctggccggccgtggccg 114
>gb|U87786.2|SCU87786 Streptomyces clavuligerus transcriptional activator ClaR (claR) gene, complete cds Length = 15120 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 tggaggacgcggcggccacgctgg 143 ||||||||||||||||| |||||| Sbjct: 12063 tggaggacgcggcggcctcgctgg 12040
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0471B04 Length = 138025 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cctcgccggccgtggccgca 293 |||||||||||||||||||| Sbjct: 25159 cctcgccggccgtggccgca 25140
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ggccatggcgagggagctgg 185 |||||||||||||||||||| Sbjct: 103802 ggccatggcgagggagctgg 103783
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ggccatggcgagggagctgg 185 |||||||||||||||||||| Sbjct: 35448 ggccatggcgagggagctgg 35429
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccagggcgcgcccggcgccg 224 |||||||||||||||||||| Sbjct: 81251 ccagggcgcgcccggcgccg 81270
>emb|AJ307055.1|CRE307055 Chlamydomonas reinhardtii chlH gene for Magnesium chelatase H-subunit, exons 1-12 Length = 7035 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 gcgcacgcaggtgcgggtggcctc 384 ||||||||||||||||| |||||| Sbjct: 4397 gcgcacgcaggtgcgggaggcctc 4374
>emb|AJ307054.1|CRE307054 Chlamydomonas reinhardtii mRNA for Magnesium chelatase H subunit Length = 5050 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 gcgcacgcaggtgcgggtggcctc 384 ||||||||||||||||| |||||| Sbjct: 2737 gcgcacgcaggtgcgggaggcctc 2714
>gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence Length = 174952 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 acaagagtgagtgtgagagtgaga 32 ||||||||||| |||||||||||| Sbjct: 54194 acaagagtgagagtgagagtgaga 54171
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tggcgagggagctggaggcg 190 |||||||||||||||||||| Sbjct: 1063327 tggcgagggagctggaggcg 1063308
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cggcagcggcgaaggtgcgcacgc 368 |||||||||||| ||||||||||| Sbjct: 149749 cggcagcggcgagggtgcgcacgc 149726
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 agagtgagtgtgagagtgagaccc 35 |||||||| ||||||||||||||| Sbjct: 1360638 agagtgagagtgagagtgagaccc 1360615
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ccagggcgcgcccggcgccg 224 |||||||||||||||||||| Sbjct: 11785160 ccagggcgcgcccggcgccg 11785141
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cctcgccggccgtggccgca 293 |||||||||||||||||||| Sbjct: 15854960 cctcgccggccgtggccgca 15854941
>emb|AL731754.3|CNS08C83 Oryza sativa chromosome 12, . BAC OJ1016_H08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113212 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cctcgccggccgtggccgca 293 |||||||||||||||||||| Sbjct: 35707 cctcgccggccgtggccgca 35726
>gb|AF069768.1|AF069768 Chlamydomonas reinhardtii magnesium chelatase H subunit (ChlH) mRNA, partial cds Length = 3149 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 gcgcacgcaggtgcgggtggcctc 384 ||||||||||||||||| |||||| Sbjct: 831 gcgcacgcaggtgcgggaggcctc 808
>gb|AC004388.1|AC004388 Homo Sapiens Chromosome X clone bWXD306, complete sequence Length = 243041 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tcacaagagtgagtgtgaga 26 |||||||||||||||||||| Sbjct: 81381 tcacaagagtgagtgtgaga 81400 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,832,566 Number of Sequences: 3902068 Number of extensions: 2832566 Number of successful extensions: 70737 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69027 Number of HSP's gapped (non-prelim): 1710 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
