>UL56_HHV11 (P10240) Protein UL56|
          Length = 197

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +2

Query: 119 PTPQNDGFGDDNGSTEEKALKARRRESDPAAALTAARHEFGEHGGVNMSIEASATFTVME 298
           PT   +G   + G + + A +A RR +   A   A R  FG  G +   +    T  V  
Sbjct: 64  PTSSGEGEASERGRSRQAAQRAARR-ARRRAERRAQRRSFGPGGLLATPLFLPETRLVAP 122

Query: 299 PDTMRRLFTG 328
           PD  R L +G
Sbjct: 123 PDITRDLLSG 132

>FTHS_STAAW (Q8NW37) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALTAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340

>FTHS_STAAS (Q6G8J5) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALTAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340

>FTHS_STAAR (Q6GFX6) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALTAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKAREAGFDPAAVVVVATIRALKMHGGV 340

>SEMG1_HUMAN (P04279) Semenogelin-1 precursor (Semenogelin I) (SGI) [Contains:|
           Alpha-inhibin-92; Alpha-inhibin-31; Seminal basic
           protein]
          Length = 462

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +2

Query: 110 LKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALTAARHEFGEHGGVNMSIEASATFT 289
           ++ P P+ + +  +N   E    ++  RE D  +     RH+ G HGG+++ I       
Sbjct: 388 IQAPNPKQEPWHGENAKGESG--QSTNREQDLLSHEQKGRHQHGSHGGLDIVI------- 438

Query: 290 VMEPDTMRRLFTGELGPERGDLY 358
           + + D   R     L  +R  L+
Sbjct: 439 IEQEDDSDRHLAQHLNNDRNPLF 461

>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)|
           (Aconitase)
          Length = 961

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +2

Query: 119 PTPQNDGFGDDNGSTEEKALKARRRESDPAAALTAARHEFG-EHGGVNMSIEASATFTVM 295
           P   ++G  DD  + +  A  A  R S+P    +    EF  +HG V ++   S T T  
Sbjct: 445 PGAPSNGHADDLPAVQSAAAHANGRPSNPVTVRSDELGEFVLDHGAVVIAAVTSCTNT-S 503

Query: 296 EPDTMRRLFTGELGPERGDLYIYSRHFNPTVLALGRQM 409
            P+ M  L    L  +R +  + S+ +  T +A G Q+
Sbjct: 504 NPEVM--LGAALLARQRVEKGLASKPWVKTTMAPGSQV 539

>RS16_RHIME (Q92L43) 30S ribosomal protein S16|
          Length = 124

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 41  KHPVIRPTVPMAHVLAAAEPLTLLKRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALT 220
           +H + +   P   V+   +   L KRP   N          +E+A +A+++  + AAA +
Sbjct: 60  QHWIAQGAQPTDRVMRFLDQAGLAKRPARNNPTKAQPGKKAQERAAEAKQKAEEAAAAAS 119

Query: 221 AARHE 235
            A  E
Sbjct: 120 EAAAE 124

>LEU3_SYMTH (Q67JY2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 368

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +2

Query: 59  PTVPMAHVLAAAEPLTLLKRPTP-----QNDGFGDDNGSTEEKALKARRRESDPAAALTA 223
           P V + H+LA    + +L+RP        ++ FGD    ++E A+        P+A+L A
Sbjct: 218 PDVEVEHLLADNAAMQILRRPGDFDVMLASNLFGDF--LSDEAAMLTGSIGLLPSASLGA 275

Query: 224 ARHEFGEHGGVNMSIEASA 280
           AR+ FG   G    I  SA
Sbjct: 276 ARNRFGLPKGFYEPIHGSA 294

>FTHS_STAES (Q8CNV9) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALTAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DP+A +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMNIKAREAGFDPSAVVVVATIRALKMHGGV 340

>FTHS_STAEQ (Q5HNH4) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALTAAR-HEFGEHGGV 256
           GFG D G+ +   +KAR    DP+A +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMNIKAREAGFDPSAVVVVATIRALKMHGGV 340

>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +2

Query: 113 KRPTPQNDGFGDDNGSTEEKALKARRRESDPAAALTAARHEFGEHGGVNMSIEASATFTV 292
           KRP+    G  +  G         RRR    A A+TAA  E  E          S    V
Sbjct: 5   KRPSDAAAGDENGRGGDARGPGSGRRRARAAAGAVTAAPQEIDED-------LHSRQLAV 57

Query: 293 MEPDTMRRLFTGEL 334
              +TMRRLF  ++
Sbjct: 58  YGRETMRRLFASDV 71

>FTHS_STAAC (Q5HF42) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 555

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 GFGDDNGSTEEKALKARRRESDPAAALTAAR-HEFGEHGGV 256
           GFG D G+ +   +K R    DPAA +  A       HGGV
Sbjct: 300 GFGSDLGAEKFMDIKVREAGFDPAAVVVVATIRALKMHGGV 340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,950,045
Number of Sequences: 219361
Number of extensions: 652867
Number of successful extensions: 1836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)