ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40g04 |
|---|---|
| Clone Library Name | barley_pub |
>UC05_MAIZE (P80611) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 154) (Fragments) Length = 28 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/37 (54%), Positives = 22/37 (59%) Frame = +3 Query: 219 DHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGG 329 DH GV DGT +VL KILPWG+EAYA G Sbjct: 1 DHPGVRDGTNIVLX----------KILPWGDEAYAAG 27
>YAET_SALTY (Q8ZRP0) Outer membrane protein assembly factor yaeT precursor| Length = 804 Score = 32.0 bits (71), Expect = 0.85 Identities = 28/84 (33%), Positives = 34/84 (40%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 392 D DH V G T W GD K +P+ E YAGGS+ TVR F Sbjct: 618 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS----------TVRGFQSNT 663 Query: 393 EGFSATVRNGTVVLAPSNPRDEYQ 464 G A +NG N D+Y+ Sbjct: 664 IGPKAVYKNGAHTSWDDN--DDYE 685
>YAET_SALPA (Q5PD65) Outer membrane protein assembly factor yaeT precursor| Length = 803 Score = 32.0 bits (71), Expect = 0.85 Identities = 28/84 (33%), Positives = 34/84 (40%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 392 D DH V G T W GD K +P+ E YAGGS+ TVR F Sbjct: 617 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS----------TVRGFQSNT 662 Query: 393 EGFSATVRNGTVVLAPSNPRDEYQ 464 G A +NG N D+Y+ Sbjct: 663 IGPKAVYKNGAHTSWDDN--DDYE 684
>YAET_SALTI (Q8Z9A3) Outer membrane protein assembly factor yaeT precursor| Length = 803 Score = 31.6 bits (70), Expect = 1.1 Identities = 25/70 (35%), Positives = 29/70 (41%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 392 D DH V G T W GD K +P+ E YAGGS+ TVR F Sbjct: 617 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS----------TVRGFQSNT 662 Query: 393 EGFSATVRNG 422 G A +NG Sbjct: 663 IGPKAVYKNG 672
>CAZA1_CHICK (P13127) F-actin capping protein alpha-1 subunit (CapZ 36/32)| (Beta-actinin subunit I) Length = 286 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/71 (30%), Positives = 31/71 (43%) Frame = +3 Query: 54 HSLGQSHPVKLVPFNPEFLDESVMWTESGDVGKGFRCIRMVNNIRLNFDALNGDKDHGGV 233 H+ Q + + P E D+ V+ TE GD+G G R + N I FD L + Sbjct: 52 HAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNG-RFLDPRNKISFKFDHLRKEASDPQP 110 Query: 234 HDGTTVVLWEW 266 D T L +W Sbjct: 111 ED-TESALKQW 120
>XYNA_STRLI (P26514) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 477 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/56 (30%), Positives = 22/56 (39%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIF 380 D DGT + LW+ G NQ W GE G G S+ V+I+ Sbjct: 366 DVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSNGSKVQIY 421
>YAET_SALCH (Q57T31) Outer membrane protein assembly factor yaeT precursor| Length = 805 Score = 30.4 bits (67), Expect = 2.5 Identities = 28/84 (33%), Positives = 36/84 (42%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 392 D DH V G T W GD K +P+ E YAGGS+ RG S I KA Sbjct: 618 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSSTV-RGFQSN---TIGPKAV 669 Query: 393 EGFSATVRNGTVVLAPSNPRDEYQ 464 G+ A P++ D+Y+ Sbjct: 670 YGYGAHT-------DPNDNNDDYE 686
>VMSA_HPBDC (P30029) Major surface antigen precursor| Length = 365 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -2 Query: 259 QRTTVVPSCTPPWSLSPLRASKL--RRMLFTMRMQRKPLPTSPL 134 + TT+ PS TPPW L P L + +L T + + P P P+ Sbjct: 146 ETTTIPPSSTPPWKLQPGDDPLLESKSLLETHPLYQNPEPAVPV 189
>SYK_HAEDU (Q7VLU5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 11/81 (13%) Frame = +3 Query: 18 AIVNKATGLAVKHSLGQ-----SHPVKLVPF------NPEFLDESVMWTESGDVGKGFRC 164 A+VN +H L Q +HP ++ P NPE D ++ ++G GF Sbjct: 364 AVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSE 423 Query: 165 IRMVNNIRLNFDALNGDKDHG 227 + + FDA KD G Sbjct: 424 LNDAEDQAARFDAQVAAKDAG 444
>CAZA2_MONDO (Q2QL99) F-actin capping protein alpha-2 subunit (CapZ alpha-2)| Length = 285 Score = 29.6 bits (65), Expect = 4.2 Identities = 17/67 (25%), Positives = 30/67 (44%) Frame = +3 Query: 54 HSLGQSHPVKLVPFNPEFLDESVMWTESGDVGKGFRCIRMVNNIRLNFDALNGDKDHGGV 233 H+ Q + + P E +E V+ TE GD+G G + + N + FD L + Sbjct: 51 HAFAQYNLDQFTPVKIEGYEEQVLITEHGDLGNG-KFLDPKNRVSFKFDHLRKEATDPRP 109 Query: 234 HDGTTVV 254 ++G + Sbjct: 110 YEGENAI 116
>CAZA2_DIDMA (Q2QL78) F-actin capping protein alpha-2 subunit (CapZ alpha-2)| Length = 285 Score = 29.6 bits (65), Expect = 4.2 Identities = 17/67 (25%), Positives = 30/67 (44%) Frame = +3 Query: 54 HSLGQSHPVKLVPFNPEFLDESVMWTESGDVGKGFRCIRMVNNIRLNFDALNGDKDHGGV 233 H+ Q + + P E +E V+ TE GD+G G + + N + FD L + Sbjct: 51 HAFAQYNLDQFTPVKIEGYEEQVLITEHGDLGNG-KFLDPKNRVSFKFDHLRKEATDPRP 109 Query: 234 HDGTTVV 254 ++G + Sbjct: 110 YEGENAI 116
>CAZA2_CHICK (P28497) F-actin capping protein alpha-2 subunit (CapZ 36/32)| (Beta-actinin subunit I) Length = 286 Score = 29.6 bits (65), Expect = 4.2 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = +3 Query: 54 HSLGQSHPVKLVPFNPEFLDESVMWTESGDVGKGFRCIRMVNNIRLNFDALNGDKDHGGV 233 H+ Q + + P + DE V+ TE GD+G G + + N I FD L + Sbjct: 52 HAFAQYNLDQFTPVKIDGYDEQVLITEHGDLGNG-KFLDPKNKISFKFDHLRKEATDPRP 110 Query: 234 HD 239 H+ Sbjct: 111 HE 112
>UC04_MAIZE (P80610) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 128) (Fragment) Length = 14 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = +3 Query: 387 ADEGFSATVRNGTV 428 ADEGFSATVRNG V Sbjct: 1 ADEGFSATVRNGAV 14
>YAET_SHISS (Q3Z5I1) Outer membrane protein assembly factor yaeT precursor| Length = 810 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSA 335 D DH V G T W GD K +P+ E YAGGS+ Sbjct: 622 DDDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS 658
>YAET_SHIFL (P0A943) Outer membrane protein assembly factor yaeT precursor| Length = 810 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSA 335 D DH V G T W GD K +P+ E YAGGS+ Sbjct: 622 DDDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS 658
>YAET_ECOLI (P0A940) Outer membrane protein assembly factor yaeT precursor| (Omp85) Length = 810 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSA 335 D DH V G T W GD K +P+ E YAGGS+ Sbjct: 622 DDDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS 658
>YAET_ECOL6 (P0A941) Outer membrane protein assembly factor yaeT precursor| Length = 810 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSA 335 D DH V G T W GD K +P+ E YAGGS+ Sbjct: 622 DDDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS 658
>YAET_ECO57 (P0A942) Outer membrane protein assembly factor yaeT precursor| Length = 810 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +3 Query: 213 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSA 335 D DH V G T W GD K +P+ E YAGGS+ Sbjct: 622 DDDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS 658
>LTK_HUMAN (P29376) Leukocyte tyrosine kinase receptor precursor (EC 2.7.10.1)| (Protein tyrosine kinase 1) Length = 864 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Frame = +3 Query: 261 EWAKGDNQSWKILPW---------GEEAYAGGSANAPRGGSSEPTVRIFCKADEGFSATV 413 E +G +++W L W G AGG RGG + T ++ ++G S Sbjct: 295 EGGQGCSEAWATLGWAAAGGFGGGGGACTAGGGGGGYRGGDASETDNLWADGEDGVSFIH 354 Query: 414 RNGTVVLAP 440 + + L P Sbjct: 355 PSSELFLQP 363
>SYY_THEFY (Q47N93) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 432 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Frame = +3 Query: 273 GDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKADEGFSATVRNGTVVLAP--SN 446 G + W + G + N P G + T + KAD +G V L P ++ Sbjct: 197 GGSDQWGNITAGLDLIRRMEGNEPHGPAHALTTTLLTKADGTKFGKTESGAVWLDPELTS 256 Query: 447 PRDEYQHWF 473 P YQ WF Sbjct: 257 PYAFYQFWF 265
>SP1_RARFA (Q05308) Serine protease 1 precursor (EC 3.4.21.-) (Serine protease| I) (RPI) Length = 525 Score = 28.9 bits (63), Expect = 7.2 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 12/85 (14%) Frame = +3 Query: 72 HPVKLVPFNPEFLDESVMWTESGDVGKGFRCIRMVNNIRLNFDALNGDKDHGGVH----- 236 HP + N + LD WT +G + C +I F LNG D VH Sbjct: 442 HPDGTLRINGKCLDARWAWTHNGTEVQLMNCN---GHIAQKF-TLNGAGDLVNVHANKCV 497 Query: 237 -------DGTTVVLWEWAKGDNQSW 290 G + LWE + G NQ W Sbjct: 498 DVKDWGGQGGKLQLWECSGGANQKW 522
>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 19) (ADAM-TS 19) (ADAM-TS19) Length = 1207 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 204 LNGDKDHGGVHDGTTVVLWEWAKGDN 281 +N D DH DG ++ EW KG N Sbjct: 490 INHDNDHPSCADGLHIMSGEWIKGQN 515
>GALT6_MOUSE (Q8C7U7) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 318 YAGGSANAPRGGSSEPTV-RIFCKADEGFSATVRNGTVVLAPSNPRDEYQHW 470 + G ++ P+ E T ++ + G T ++ +AP NPRD YQ W Sbjct: 568 FVGKNSRVPKDEEWELTQDQLIRNSGSGTCLTSQDKKPAMAPCNPRDPYQLW 619
>ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 19) (ADAM-TS 19) (ADAM-TS19) Length = 1210 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 204 LNGDKDHGGVHDGTTVVLWEWAKGDN 281 +N D DH DG ++ EW KG N Sbjct: 493 INHDNDHPSCADGLHIMSGEWIKGQN 518 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,313,048 Number of Sequences: 219361 Number of extensions: 905693 Number of successful extensions: 3806 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3801 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
