ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40g03 |
|---|---|
| Clone Library Name | barley_pub |
>FBRL2_ARATH (Q94AH9) Fibrillarin-2 (Fibrillarin-like protein)| Length = 320 Score = 85.1 bits (209), Expect = 7e-17 Identities = 39/54 (72%), Positives = 46/54 (85%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNEDSSK 443 GMKGG+KV+V PH+H GVFIAK KEDAL TKN+V GE+VY EK +SVQNED +K Sbjct: 73 GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTK 126
>FBRL1_ARATH (Q9FEF8) Fibrillarin-1 (SKP1-interacting partner 7)| Length = 308 Score = 85.1 bits (209), Expect = 7e-17 Identities = 39/54 (72%), Positives = 46/54 (85%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNEDSSK 443 GMKGG+KV+V PH+H GVFIAK KEDAL TKN+V GE+VY EK +SVQNED +K Sbjct: 62 GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTK 115
>FBRL_CANGA (Q6FN88) Fibrillarin| Length = 323 Score = 77.4 bits (189), Expect = 1e-14 Identities = 36/48 (75%), Positives = 40/48 (83%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQ 425 G KGGAKVV+ PHKHDGV+IA+ KED L TKNM GESVYGEK VSV+ Sbjct: 75 GAKGGAKVVIEPHKHDGVYIARGKEDLLVTKNMAPGESVYGEKRVSVE 122
>FBRL3_ARATH (Q9FHB3) Putative fibrillarin-3| Length = 292 Score = 76.3 bits (186), Expect = 3e-14 Identities = 34/53 (64%), Positives = 43/53 (81%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNEDSS 440 G+KGG+KV+V PH+H GVF+AK+K DAL TKN+V GE +Y EK + VQNED S Sbjct: 52 GIKGGSKVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRS 104
>FBRL_SCHPO (P35551) Fibrillarin| Length = 305 Score = 74.3 bits (181), Expect = 1e-13 Identities = 33/54 (61%), Positives = 42/54 (77%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNEDSSK 443 G KGGAKV++ PH+H GVFIA+ KED L T+N+V GESVY EK +SV + D +K Sbjct: 66 GAKGGAKVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTK 119
>FBRL_ASHGO (Q756P0) Fibrillarin| Length = 326 Score = 74.3 bits (181), Expect = 1e-13 Identities = 35/54 (64%), Positives = 41/54 (75%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNEDSSK 443 G KGGAKVV+ PHKH GVFIA+ KED L TKN+ GESVYGEK +SV+ S + Sbjct: 80 GAKGGAKVVIEPHKHAGVFIARGKEDLLVTKNVAPGESVYGEKRISVEEPASEE 133
>FBRL_YEAST (P15646) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 71.6 bits (174), Expect = 8e-13 Identities = 32/48 (66%), Positives = 39/48 (81%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQ 425 G +GGAKVV+ PH+H GV+IA+ KED L TKNM GESVYGEK +SV+ Sbjct: 79 GARGGAKVVIEPHRHAGVYIARGKEDLLVTKNMAPGESVYGEKRISVE 126
>FBRL_CAEEL (Q22053) Fibrillarin| Length = 352 Score = 71.2 bits (173), Expect = 1e-12 Identities = 35/49 (71%), Positives = 38/49 (77%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQN 428 GM+GG VVV PH+ GVFI K KEDAL TKNMV GESVYGEK VSV + Sbjct: 110 GMRGGKTVVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSVDD 158
>FBRL_DEBHA (Q6BQ34) Fibrillarin| Length = 329 Score = 69.7 bits (169), Expect = 3e-12 Identities = 30/48 (62%), Positives = 39/48 (81%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQ 425 G +GGAKVV+ PH+H GVFIA+ KED L T+N+ GESVYGEK +S++ Sbjct: 81 GARGGAKVVIEPHRHAGVFIARGKEDLLVTRNIAPGESVYGEKRISIE 128
>FBRL_XENLA (P22232) Fibrillarin| Length = 323 Score = 69.7 bits (169), Expect = 3e-12 Identities = 30/49 (61%), Positives = 39/49 (79%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQN 428 G G KV+V PH+H+G+FI + KEDAL TKN+V GESVYGEK +SV++ Sbjct: 81 GFGAGRKVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEKRISVED 129
>FBRL_DROER (Q8I1F4) Fibrillarin| Length = 345 Score = 69.3 bits (168), Expect = 4e-12 Identities = 30/49 (61%), Positives = 37/49 (75%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQN 428 G KGG V + PH+H+GVFIA+ KEDAL T+N V G VYGEK +SV+N Sbjct: 105 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN 153
>FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma antigen)| Length = 321 Score = 68.2 bits (165), Expect = 9e-12 Identities = 31/51 (60%), Positives = 38/51 (74%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNED 434 G + G V+V PH+H+GVFI + KEDAL TKN+V GESVYGEK VS+ D Sbjct: 79 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGD 129
>FBRL_RAT (P22509) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 68.2 bits (165), Expect = 9e-12 Identities = 31/51 (60%), Positives = 38/51 (74%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNED 434 G + G V+V PH+H+GVFI + KEDAL TKN+V GESVYGEK VS+ D Sbjct: 85 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGD 135
>FBRL_MOUSE (P35550) Fibrillarin (Nucleolar protein 1)| Length = 327 Score = 68.2 bits (165), Expect = 9e-12 Identities = 31/51 (60%), Positives = 38/51 (74%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNED 434 G + G V+V PH+H+GVFI + KEDAL TKN+V GESVYGEK VS+ D Sbjct: 85 GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGD 135
>FBRL_DROME (Q9W1V3) Fibrillarin| Length = 344 Score = 67.0 bits (162), Expect = 2e-11 Identities = 29/48 (60%), Positives = 36/48 (75%) Frame = +3 Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQ 425 G KGG V + PH+H+GVFIA+ KEDAL T+N V G VYGEK +SV+ Sbjct: 104 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVE 151
>FBRL_NEUCR (Q9HE26) Fibrillarin| Length = 323 Score = 64.3 bits (155), Expect = 1e-10 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 4/53 (7%) Frame = +3 Query: 282 GMKGGA---KVVVVPHKHDGVFIAKA-KEDALCTKNMVAGESVYGEKGVSVQN 428 G KGGA KV+V PH+H GVF+A+ KED L T N+V GESVYGEK +SV+N Sbjct: 70 GAKGGAAGKKVIVEPHRHKGVFVARGGKEDLLATVNLVPGESVYGEKRISVEN 122
>FBRL_LEIMA (P35549) Fibrillarin| Length = 297 Score = 58.5 bits (140), Expect = 7e-09 Identities = 29/44 (65%), Positives = 34/44 (77%), Gaps = 1/44 (2%) Frame = +3 Query: 294 GAKVVVVPHK-HDGVFIAKAKEDALCTKNMVAGESVYGEKGVSV 422 GAKV+V PH H GVFI+KAK D+LCT NMV G SVYGEK + + Sbjct: 56 GAKVIVEPHMLHPGVFISKAKTDSLCTLNMVPGISVYGEKRIEL 99
>FBRL_GIALA (Q24957) Fibrillarin| Length = 327 Score = 58.2 bits (139), Expect = 9e-09 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Frame = +3 Query: 282 GMKGGAKVVVVPH-KHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNEDS 437 G KGGAK +V PH K+DG+FI+ + D L TK++ G +VYGEK +SV+ +S Sbjct: 87 GFKGGAKTMVKPHPKYDGIFISHGRGDVLVTKSLAPGVAVYGEKRISVEGTES 139
>FBRL_TETTH (Q27200) Fibrillarin| Length = 294 Score = 53.5 bits (127), Expect = 2e-07 Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 2/50 (4%) Frame = +3 Query: 282 GMKG--GAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQ 425 G KG G K ++V H+ +GVFI K +++AL TKN GESVY EK +SV+ Sbjct: 56 GAKGPRGPKTIIVKHRLEGVFICKGQQEALVTKNFFPGESVYNEKRMSVE 105
>FBRL_ENCCU (Q8SR42) Fibrillarin| Length = 291 Score = 48.9 bits (115), Expect = 6e-06 Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%) Frame = +3 Query: 300 KVVVVPH-KHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNE 431 KV+V PH + GV+I++ KED L T+N+V G SVYGEK V+V E Sbjct: 46 KVLVEPHPRFPGVYISRGKEDLLLTRNLVPGVSVYGEKRVAVDLE 90
>FLPA_NANEQ (Q74N89) Fibrillarin-like pre-rRNA-processing protein| Length = 232 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +3 Query: 303 VVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNED 434 + V PHK +GV+I K L TKN+V G+ VY E+ + E+ Sbjct: 7 IKVKPHKLEGVYIGNNK--FLLTKNLVKGQKVYTERIFKSKGEE 48
>FLPA_PYRAB (Q9V2L5) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 33.5 bits (75), Expect = 0.24 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +3 Query: 303 VVVVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEKGVSVQNED 434 V V HK GV+I + + + TKN+V G+ VYGE+ + + E+ Sbjct: 2 VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEE 47
>FLPA_PYRFU (Q8U4M2) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 33.1 bits (74), Expect = 0.31 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +3 Query: 303 VVVVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEKGVSVQNED 434 V V HK GV++ + + + TKN+V G+ VYGE+ + + E+ Sbjct: 2 VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEE 47
>FLPA_PYRKO (Q5JFN1) Fibrillarin-like pre-rRNA-processing protein| Length = 226 Score = 32.7 bits (73), Expect = 0.41 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +3 Query: 309 VVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEKGVSVQNED 434 V H+ GV+I + + + TKN+V G+ VYGE+ V + E+ Sbjct: 3 VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGERVVKFEGEE 46
>FLPA_PYRHO (O57811) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 32.3 bits (72), Expect = 0.53 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +3 Query: 303 VVVVPHKHDGVF--IAKAKEDALCTKNMVAGESVYGEKGVSVQNED 434 V V HK GV+ I + + TKN+V G+ VYGE+ + + E+ Sbjct: 2 VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGERVIKWEGEE 47
>FLPA_PYRAE (Q8ZTI9) Fibrillarin-like pre-rRNA-processing protein| Length = 235 Score = 32.3 bits (72), Expect = 0.53 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%) Frame = +3 Query: 303 VVVVPH-KHDGVFIAKAKE--DALCTKNMVAGESVYGEK 410 V V PH +H GV++ K ++ + + TKN+ G VYGE+ Sbjct: 6 VEVKPHERHYGVYVVKFEDGTERIATKNLTPGRRVYGER 44
>FLPA_AERPE (Q9Y9U3) Fibrillarin-like pre-rRNA-processing protein| Length = 233 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 5/40 (12%) Frame = +3 Query: 306 VVVPHKHD---GVFIAKAKEDAL--CTKNMVAGESVYGEK 410 VV +HD GV++ + ++ +L TKN+V G+ VYGE+ Sbjct: 4 VVSVREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGER 43
>NK2R_RAT (P16610) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 390 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305 PF P +P+T ++ +ALA+ +P C + T T Sbjct: 138 PFQPRLSAPSTKAIIAGIWLVALALASPQCFYSTIT 173
>NK2R_HUMAN (P21452) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 398 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305 PF P +P+T ++ +ALA+ +P C + T T Sbjct: 138 PFQPRLSAPSTKAVIAGIWLVALALASPQCFYSTVT 173
>NK2R_BOVIN (P05363) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 384 Score = 30.0 bits (66), Expect = 2.7 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTTT 302 PF P +P T ++ +ALA+ P C + T TT Sbjct: 138 PFQPRLSAPGTRAVIAGIWLVALALAFPQCFYSTITT 174
>FLPA_METMA (O53133) Fibrillarin-like pre-rRNA-processing protein| Length = 227 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 327 DGVFIAKAKEDALCTKNMVAGESVYGEKGVSVQNED 434 +G+F + L T N+ G+ VYGEK +SV+ ++ Sbjct: 9 EGIFEVTKDKKQLSTLNLDPGKVVYGEKLISVEGDE 44
>NK2R_CANFA (Q5DUB2) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 384 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -1 Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305 PF P +P T ++ LALA+ P C + T T Sbjct: 138 PFQPRLSAPGTRAVIAGIWLLALALAFPQCFYSTIT 173
>NK2R_MOUSE (P30549) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 384 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305 PF P +P+T ++ +ALA+ +P C + T T Sbjct: 138 PFQPRLSAPSTKAVIAVIWLVALALASPQCFYSTIT 173
>FLPA_SULTO (Q971W2) Fibrillarin-like pre-rRNA-processing protein| Length = 233 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 363 LCTKNMVAGESVYGEKGVSVQ 425 LCTKN+ G SVYGE+ V+ Sbjct: 27 LCTKNLAPGFSVYGERLFKVE 47 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,203,051 Number of Sequences: 219361 Number of extensions: 330112 Number of successful extensions: 1066 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1051 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1064 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
