ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) ... 35 0.11
2PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein) 35 0.11
3PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) ... 35 0.11
4PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein) 35 0.11
5PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein) 35 0.11

>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)|
          Length = 377

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 338 LERRLQELSGNPEARVADYFDVAPETSS 421
           LE +LQE+  N +AR+ADYFDV   TS+
Sbjct: 42  LEGQLQEVDNNKDARLADYFDVIGGTST 69



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>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)|
          Length = 386

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 338 LERRLQELSGNPEARVADYFDVAPETSS 421
           LE +LQE+  N +AR+ADYFDV   TS+
Sbjct: 51  LEGQLQEVDNNTDARLADYFDVIGGTST 78



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>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber|
           protein)
          Length = 386

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 338 LERRLQELSGNPEARVADYFDVAPETSS 421
           LE +LQE+  N +AR+ADYFDV   TS+
Sbjct: 51  LEGQLQEVDNNKDARLADYFDVIGGTST 78



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>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)|
          Length = 386

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 338 LERRLQELSGNPEARVADYFDVAPETSS 421
           LE +LQE+  N +AR+ADYFDV   TS+
Sbjct: 51  LEGQLQEVDNNKDARLADYFDVIGGTST 78



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>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)|
          Length = 386

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 338 LERRLQELSGNPEARVADYFDVAPETSS 421
           LE +LQE+  N +AR+ADYFDV   TS+
Sbjct: 51  LEGQLQEVDNNKDARLADYFDVIGGTST 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,028,477
Number of Sequences: 219361
Number of extensions: 535513
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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