ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40f01 |
|---|---|
| Clone Library Name | barley_pub |
>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog| Length = 194 Score = 37.4 bits (85), Expect = 0.019 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 10/108 (9%) Frame = +2 Query: 167 VALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GI-QAAPAGA 325 V LNVYD+ + S+ +G ++H+G+ VYG E+ +GG GI + +P A Sbjct: 7 VVLNVYDMY-WMNEYTSSIGIG-----VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60 Query: 326 TQYGRPVR---VVDLSVTHLPREVFEDYLRDIAPRYTXATYSLLTPHC 460 ++ G + V L T + E + ++ Y Y L+ +C Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNC 108
>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog| Length = 194 Score = 37.4 bits (85), Expect = 0.019 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 10/108 (9%) Frame = +2 Query: 167 VALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GI-QAAPAGA 325 V LNVYD+ + S+ +G ++H+G+ VYG E+ +GG GI + +P A Sbjct: 7 VVLNVYDMY-WMNEYTSSIGIG-----VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60 Query: 326 TQYGRPVR---VVDLSVTHLPREVFEDYLRDIAPRYTXATYSLLTPHC 460 ++ G + V L T + E + ++ Y Y L+ +C Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNC 108
>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146| Length = 194 Score = 37.4 bits (85), Expect = 0.019 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 10/108 (9%) Frame = +2 Query: 167 VALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GI-QAAPAGA 325 V LNVYD+ + S+ +G ++H+G+ VYG E+ +GG GI + +P A Sbjct: 7 VVLNVYDMY-WMNEYTSSIGIG-----VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60 Query: 326 TQYGRPVR---VVDLSVTHLPREVFEDYLRDIAPRYTXATYSLLTPHC 460 ++ G + V L T + E + ++ Y Y L+ +C Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNC 108
>HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1| Length = 201 Score = 35.8 bits (81), Expect = 0.057 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Frame = +2 Query: 164 KVALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGGGIQAAPAG--ATQYG 337 KV +NVYDL LG I+HTG+V+ G EY FG G AT Sbjct: 2 KVYINVYDLMPDSPVNKLAWTLGL---GIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPR 58 Query: 338 RPVR------VVDLSVTHLPREVFEDYLRDIAPRYTXATYSLLTPHC 460 P+ + L LP+ + L ++ +T +YSLL +C Sbjct: 59 PPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNC 105
>INVO_GALCR (P24710) Involucrin| Length = 384 Score = 35.4 bits (80), Expect = 0.074 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Frame = -1 Query: 280 VPVHHHARVPDGLDGLAEEGCGELARE---AVAQVVDVERHLVPLLRHYRLGNRREPRRF 110 VP H + D + G+ E+ CG+ E Q V + + P LG + EP Sbjct: 55 VPSKHEEKGTDPVKGVLEQECGQQEPELHLGKQQDVHLMKRQDPQEPELHLGKQPEPEGP 114 Query: 109 EPNLGEED--------DAAAGKERQQE 53 EP+LG+E + GK++QQE Sbjct: 115 EPHLGKEQQHQESQDPELHLGKQQQQE 141
>DED1_CRYNE (Q5KN36) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 637 Score = 32.3 bits (72), Expect = 0.63 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -2 Query: 348 RTGRPYCVAPAG-AAWIPPPKKYSFPYTTTPVCQMASMGLPRKDVESWRARPLLR 187 R P V PA AA+ P P P TT P + + DV W A+P +R Sbjct: 38 RAAPPAAVPPAAPAAYRPSPTGLPTPATTPPTRHIVPAAVAEDDVGGWGAQPRVR 92
>MET17_YEAST (P06106) Protein MET17 [Includes: O-acetylhomoserine sulfhydrylase| (EC 2.5.1.49) (OAH sulfhydrylase) (Homocysteine synthase); O-acetylserine sulfhydrylase (EC 2.5.1.47) (OAS sulfhydrylase)] Length = 443 Score = 31.2 bits (69), Expect = 1.4 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Frame = +2 Query: 104 RLESPRLSAIPQAIMAEEGHKVALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNE 283 R ++P + + + I A EG AL V S+G A Q I+ + HTG + Sbjct: 57 RFQNPTSNVLEERIAALEGGAAALAV---SSGQAAQTLA------IQGLAHTGDNIVSTS 107 Query: 284 YFFGGGIQAAPAGATQYGRPVRVVDLSVTHLPREVFED-----YLRDIA-PRY 424 Y +GG ++G R V+ +VF++ YL I P+Y Sbjct: 108 YLYGGTYNQFKISFKRFGIEARFVEGDNPEEFEKVFDERTKAVYLETIGNPKY 160
>LOLD_VIBCH (P57066) Lipoprotein-releasing system ATP-binding protein lolD| Length = 228 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Frame = +2 Query: 134 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 229 P ++A+E HK AL++YDL L R+ T+FL Sbjct: 163 PDLVLADEPTGNLDHKTALSIYDLMRELNRESGTAFL 199
>POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease| 2) Length = 875 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = -1 Query: 367 DAQVDDPHGAAVLXXXXXXRLDPAPEEVLVPVHHHARVPDGLDGLAEEGCGELAREAVAQ 188 +A D A+L L AP V +P H H +P LA G GELA + AQ Sbjct: 420 NASRDFASDLALLQLRTRVNLTAAPSAVCLPHHEHYFLPGSHCRLARWGRGELAPGSSAQ 479 Query: 187 V 185 + Sbjct: 480 L 480
>XERD_AGRT5 (Q8U9U6) Tyrosine recombinase xerD| Length = 331 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/33 (48%), Positives = 20/33 (60%) Frame = +2 Query: 371 HLPREVFEDYLRDIAPRYTXATYSLLTPHCTLH 469 HLPR+VF L+DIA R T S ++PH H Sbjct: 243 HLPRQVFARDLKDIAIR-AGLTASAVSPHVLRH 274
>LOLD_VIBVY (Q7MJ01) Lipoprotein-releasing system ATP-binding protein lolD| Length = 227 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = +2 Query: 134 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 229 P ++A+E HK AL +YDL L R+ T+FL Sbjct: 163 PALVLADEPTGNLDHKTALQIYDLMRELNRESGTAFL 199
>LOLD_VIBVU (Q8DAV6) Lipoprotein-releasing system ATP-binding protein lolD| Length = 227 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = +2 Query: 134 PQAIMAEE-----GHKVALNVYDLSNGLARQLSTSFL 229 P ++A+E HK AL +YDL L R+ T+FL Sbjct: 163 PALVLADEPTGNLDHKTALQIYDLMRELNRESGTAFL 199
>GLGA2_RHIME (P58394) Glycogen synthase 2 (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase 2) Length = 486 Score = 29.3 bits (64), Expect = 5.3 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +2 Query: 227 LGKPIEAIWHTGVVVYGNEYFFGGGIQAAPA 319 LG P EA GV YG+ F GG+QAA A Sbjct: 179 LGLPAEAYSIDGVEYYGDIGFLKGGLQAADA 209
>VATB_CHLTR (O84309) V-type ATP synthase beta chain (EC 3.6.3.14) (V-type| ATPase subunit B) Length = 438 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Frame = +2 Query: 140 AIMAEEGHKVALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYF---FGGGIQA 310 +++ + KV L V+ ++GL+ FLG+P+E V+YG+ F G + Sbjct: 42 SVLRFDARKVTLQVFGGTSGLSTGDKVIFLGRPME-------VIYGDSLLGRRFNGTGKP 94 Query: 311 APAGATQYGRPVRVVDLSVTHLPREVFEDYLRDIAP 418 +G P+ + S + R V + +R P Sbjct: 95 IDREDECFGEPIPITTPSFNPVCRIVPREMVRTNIP 130
>VATB_CHLMU (Q9PK86) V-type ATP synthase beta chain (EC 3.6.3.14) (V-type| ATPase subunit B) Length = 438 Score = 28.9 bits (63), Expect = 6.9 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Frame = +2 Query: 140 AIMAEEGHKVALNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYF---FGGGIQA 310 +++ + KV L V+ ++GL+ FLG+P+E VVYG+ F G + Sbjct: 42 SVLRFDAKKVTLQVFGGTSGLSTGDKVVFLGRPME-------VVYGDSLLGRRFNGTGKP 94 Query: 311 APAGATQYGRPVRVVDLSVTHLPREVFEDYLRDIAP 418 +G P+ + S + R V + +R P Sbjct: 95 IDNEEICFGEPIPITTPSFNPVCRIVPREMVRTNIP 130
>PHS_PELLD (Q3B6N5) Putative pterin-4-alpha-carbinolamine dehydratase (EC| 4.2.1.96) (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) Length = 114 Score = 28.9 bits (63), Expect = 6.9 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -1 Query: 250 DGLDGLAEEGCGELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRFEPNLGEEDDAAAG 71 +GL LAE EL +E V+ E + L+R + N RE F ++GE ++ Sbjct: 14 EGLPPLAERESEELLKEIPEWVIVSEDGVSRLVRTFTFENFREAMAFAGSVGELAESEQH 73 Query: 70 KER-QQEQGRTRARIW 26 + E G+ R W Sbjct: 74 HPKLVTEWGKVRVEWW 89
>CT075_MOUSE (P59383) Protein C20orf75 homolog precursor| Length = 733 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = -2 Query: 276 PYTTTPVCQMAS--MGLPRKDVESWRARPLLRS*TLSATLCPSSAIIAWGIAESRG 115 P TT VC +A+ GL + WR + T PSS +I WG+ + G Sbjct: 639 PGTTYHVCVLAANRAGLSQSQTSGWRRS------CATFTTKPSSVVIFWGLCTASG 688
>RIR1_HHV23 (P09853) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1144 Score = 28.5 bits (62), Expect = 9.1 Identities = 31/101 (30%), Positives = 38/101 (37%), Gaps = 22/101 (21%) Frame = -2 Query: 342 GRPYCVAPAGAAWIPPPKKYSFPYTTTPVCQMASMGLPRKDV---ESWRARPLLRS*TL- 175 G P P G +PPP FP+ + + G KDV ESW P S T Sbjct: 137 GNPRTPEPQGPQAVPPPPPPPFPWGHECCARRDARGGAEKDVGAAESWSDGPSSDSETED 196 Query: 174 -----------SATLCPSSAIIAWGI-------AESRGDSS 106 S TL SS+I A G ++SR D S Sbjct: 197 SDSSDEDTGSGSETLSRSSSIWAAGATDDDDSDSDSRSDDS 237
>SIA7A_HUMAN (Q9NSC7) Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase| 1 (EC 2.4.99.3) (GalNAc alpha-2,6-sialyltransferase I) (ST6GalNAc I) (Sialyltransferase 7A) Length = 600 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 312 AAWIPPPKKYSFPYTTTPVCQMASMGLPRKDVESWRAR 199 AAW P K+ + T +P Q A M R + +SW+++ Sbjct: 122 AAWKSPEKEKTMVNTLSPRGQDAGMASGRTEAQSWKSQ 159
>RL4_STRAW (Q82DP4) 50S ribosomal protein L4| Length = 221 Score = 28.5 bits (62), Expect = 9.1 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Frame = -1 Query: 244 LDGLAEEGCGELAREAVAQVVDVERHLVPLLRHY--------RLGNRREPRRFEPNLGEE 89 +D L+ G E A++ DVE+ +PLL R G + RR E G Sbjct: 4 IDILSPSGDNAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRGG-- 61 Query: 88 DDAAAGKERQQEQGRTRARIWEERAEQ 8 GK+ +++G RAR RA Q Sbjct: 62 -----GKKPYRQKGTGRARQGSTRAPQ 83
>NUCB1_RAT (Q63083) Nucleobindin-1 precursor (CALNUC) (Bone 63 kDa| calcium-binding protein) Length = 459 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/84 (27%), Positives = 37/84 (44%) Frame = -1 Query: 289 EVLVPVHHHARVPDGLDGLAEEGCGELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRF 110 E L P + H L+ L + +LA+ A + +R Y + E RR+ Sbjct: 138 EHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKR--------YEMLKEHERRRY 189 Query: 109 EPNLGEEDDAAAGKERQQEQGRTR 38 +LGEE A ++ Q++Q R R Sbjct: 190 LESLGEEQRKEAERKLQEQQRRHR 213
>NUCB1_MOUSE (Q02819) Nucleobindin-1 precursor (CALNUC)| Length = 459 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/84 (27%), Positives = 37/84 (44%) Frame = -1 Query: 289 EVLVPVHHHARVPDGLDGLAEEGCGELAREAVAQVVDVERHLVPLLRHYRLGNRREPRRF 110 E L P + H L+ L + +LA+ A + +R Y + E RR+ Sbjct: 138 EHLDPQNQHTFEARDLELLIQTATRDLAQYDAAHHEEFKR--------YEMLKEHERRRY 189 Query: 109 EPNLGEEDDAAAGKERQQEQGRTR 38 +LGEE A ++ Q++Q R R Sbjct: 190 LESLGEEQRKEAERKLQEQQRRHR 213
>GLPK_DEIRA (Q9RT38) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 501 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = -1 Query: 127 REPRRFEPNLGEEDDAAAGKERQQEQGRTRARIWEERAE 11 +E +RFEP + EE+ + R+ ++ RAR WE+ +E Sbjct: 464 QEDKRFEPQMSEEERSKL--MRRWKKAVARARDWEDDSE 500
>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor| Length = 910 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -1 Query: 112 FEPNLGEEDDAAAGKERQQEQGRTRARIWEERAEQS 5 FE + ++ +A A +ERQQE+G WEE + S Sbjct: 429 FEGSKTQDIEAEASEERQQERGNPVIAQWEEVEDAS 464 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,256,282 Number of Sequences: 219361 Number of extensions: 938097 Number of successful extensions: 3858 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3854 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
