ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22) 99 3e-21
2Y5541_ARATH (Q9FKP8) ZF-HD homeobox protein At5g65410 98 9e-21
3SAS_DROME (Q04164) Putative epidermal cell surface receptor prec... 29 5.4
4ISPG_LEPIN (Q8F1H5) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 29 5.4
5ISPG_LEPIC (Q72TR2) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 29 5.4
6HEM6_TOBAC (Q42946) Coproporphyrinogen III oxidase, chloroplast ... 25 5.5
7AMPN_STRLI (Q11010) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminop... 28 7.1

>Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22)|
          Length = 220

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 41/57 (71%), Positives = 50/57 (87%)
 Frame = +2

Query: 242 RYRECLKNHAVGIGGHAVDGCGEFIAAGEEGSIDALRCAACNCHRNFHRRESDFPAG 412
           RYRECLKNHAV IGGHAVDGC EF+ +GE+G++DAL+CAAC CHRNFHR+E++   G
Sbjct: 48  RYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGG 104



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>Y5541_ARATH (Q9FKP8) ZF-HD homeobox protein At5g65410|
          Length = 279

 Score = 97.8 bits (242), Expect = 9e-21
 Identities = 49/91 (53%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
 Frame = +2

Query: 131 PPLSTGLAGAGITPNKPPXXXXXXXXXXXRAKVPGGA---RYRECLKNHAVGIGGHAVDG 301
           PPLS  L  A    ++                  GG    R+RECLKN AV IGGHAVDG
Sbjct: 34  PPLSRVLPKASTESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDG 93

Query: 302 CGEFIAAGEEGSIDALRCAACNCHRNFHRRE 394
           CGEF+ AG EG+IDAL+CAAC CHRNFHR+E
Sbjct: 94  CGEFMPAGIEGTIDALKCAACGCHRNFHRKE 124



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>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor|
           (Stranded at second protein)
          Length = 1693

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 218 RAKVPGGARYRECLKNHAVGIGGHAVDGCGEFIAAGEEGSIDALRCAACNCHRNF 382
           +A+  GGA+     K     +G    DGC +     E+G    + CA   C  NF
Sbjct: 741 QARDAGGAKPTCTFKGAEYDVGQQFRDGCDQLCICNEQG----IHCAKLECPSNF 791



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>ISPG_LEPIN (Q8F1H5) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 663

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 251 ECLKNHAVGIGGHAVDGCGEFI 316
           E L N A+GIGG  +DG G+ I
Sbjct: 511 EALYNSAIGIGGLLIDGIGDLI 532



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>ISPG_LEPIC (Q72TR2) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 663

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 251 ECLKNHAVGIGGHAVDGCGEFI 316
           E L N A+GIGG  +DG G+ I
Sbjct: 511 EALYNSAIGIGGLLIDGIGDLI 532



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>HEM6_TOBAC (Q42946) Coproporphyrinogen III oxidase, chloroplast precursor (EC|
           1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 397

 Score = 24.6 bits (52), Expect(2) = 5.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 284 GHAVDGCGEFIAAGEEGSIDALRCAACNCHRNFHRRESDFPAGAEGSP 427
           G+   G   F AAG    +      A   H N+   E+D P  A G+P
Sbjct: 170 GNVKPGPIPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAP 217



 Score = 22.7 bits (47), Expect(2) = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 224 KVPGGARYRECLKNHAVGIGGHA 292
           K  GGA+++E + +   G GGH+
Sbjct: 111 KADGGAKFKEDVWSRPGGGGGHS 133



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>AMPN_STRLI (Q11010) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminopeptidase)|
           (Lys-AP) (Alanine aminopeptidase)
          Length = 857

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 227 VPGGARYRECLKNHAVGIGGHAVDGCGEFI 316
           +P GA+    L+ H + IG + +DG G+ +
Sbjct: 478 LPAGAKGEPTLRPHRIAIGAYDLDGAGKLV 507


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,941,686
Number of Sequences: 219361
Number of extensions: 537949
Number of successful extensions: 1314
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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