ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472718.1| Oryza sativa (japonica cultivar-group), predic... 119 7e-24
2gb|AY596573.1| Saccharum officinarum clone SCCCLR1C01D11, comple... 119 7e-24
3tpg|BK001566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 119 7e-24
4dbj|AK103788.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
5dbj|AK101129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
6gb|AY107167.1| Zea mays PCO149856 mRNA sequence 103 4e-19
7emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
9ref|XM_466380.1| Oryza sativa (japonica cultivar-group), mRNA 74 4e-10
10dbj|AK059246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
12dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
13gb|AY596580.1| Saccharum officinarum clone SCCCCL3120B06, comple... 56 9e-05
14gb|AY105912.1| Zea mays PCO095569 mRNA sequence 56 9e-05
15ref|XM_479197.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.021
16gb|AY596563.1| Saccharum officinarum clone SCJLLR2013G10, comple... 48 0.021
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
18dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
19dbj|AK063642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
20gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 46 0.082
21ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.32
22ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
23ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
24gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 44 0.32
25dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
26dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
27dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
28dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
29dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
30gb|AE005704.1| Caulobacter crescentus CB15 section 30 of 359 of ... 42 1.3
31ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa857... 40 5.1
32gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genom... 40 5.1
33gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.1
34emb|Z70756.1|CET06E4 Caenorhabditis elegans Cosmid T06E4, comple... 40 5.1
35gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete ... 40 5.1
36gb|AC146852.15| Medicago truncatula clone mth2-58k21, complete s... 40 5.1
37gb|AC135320.6| Medicago truncatula clone mth2-28e9, complete seq... 40 5.1
38emb|AL109800.25|HSDA64P14 Human DNA sequence from clone RP6-64P1... 40 5.1
39emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A stra... 40 5.1
40gb|AC018371.10| Homo sapiens chromosome 18, clone RP11-552O4, co... 40 5.1
41gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold 40 5.1
42dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
44dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
45dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
46dbj|AK101680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
47dbj|AK068724.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
48dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
49dbj|AK060532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
50gb|AY106079.1| Zea mays PCO068745 mRNA sequence 40 5.1
51dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
52emb|AL772366.7| Mouse DNA sequence from clone RP23-171C7 on chro... 40 5.1
53dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1 
>ref|XM_472718.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 918

 Score =  119 bits (60), Expect = 7e-24
 Identities = 141/168 (83%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || 
Sbjct: 124 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 183

                                                                       
Query: 268 gccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaatg 327
           || |||||||||||||| |||||| | | | |    || || |||||| | || ||||||
Sbjct: 184 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 243

                                                           
Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
           ||||| ||||||||||| ||||| || ||||| |||  ||||||||||
Sbjct: 244 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagag 291



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           ||||||||||||  ||||||| |||  ||||||||||||||||| |||||||||||||||
Sbjct: 1   atggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctcacgtgg 60

                      
Query: 151 tcggccacggg 161
           ||||| |||||
Sbjct: 61  tcggcgacggg 71
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>gb|AY596573.1| Saccharum officinarum clone SCCCLR1C01D11, complete sequence
          Length = 1372

 Score =  119 bits (60), Expect = 7e-24
 Identities = 141/168 (83%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| | |||||| |||||||| ||||||||||||||||| | |||||| || 
Sbjct: 268 ctcaagccggccgcggggattacgccggcgatgttcggcgcgccggtcaccgagcaggag 327

                                                                       
Query: 268 gccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaatg 327
           ||||||||||||||||| |||||||||| | |    || || |||||| |||| ||||||
Sbjct: 328 gccgaggatctgagcaagagtgaaaggaaattttgctctggctcaaagttgaaagaaatg 387

                                                           
Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
           | ||| |||||||| ||  |||| |||||||| ||| |||||||||||
Sbjct: 388 agtggaagtgggatcttcactgagaagagtgaaaatggtgattcagag 435



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                       
Query: 86  gagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctca 145
           |||||||||||||||||  |||||| ||||  |||||||||   ||||||||||| ||| 
Sbjct: 149 gagcaatggagagggcggtgccggttcggaagccgcacaccaacacggccgaccttctct 208

                           
Query: 146 cgtggtcggccacggg 161
           | ||||||||||||||
Sbjct: 209 cctggtcggccacggg 224
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>tpg|BK001566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) HN1-like
           protein isoform 1 mRNA, complete cds
          Length = 1262

 Score =  119 bits (60), Expect = 7e-24
 Identities = 141/168 (83%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || 
Sbjct: 221 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 280

                                                                       
Query: 268 gccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaatg 327
           || |||||||||||||| |||||| | | | |    || || |||||| | || ||||||
Sbjct: 281 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 340

                                                           
Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
           ||||| ||||||||||| ||||| || ||||| |||  ||||||||||
Sbjct: 341 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagag 388



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 85  ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 144
           ||||||||||| |||| |  || |||| |||  ||||||||||||||||  |||||||||
Sbjct: 92  ggagcaatggaaaggggggggcgggtgaggaagccgcacacctcgacgggggacctgctc 151

                      
Query: 145 acgtggtcggc 155
           |||||||||||
Sbjct: 152 acgtggtcggc 162
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>dbj|AK103788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I18, full
           insert sequence
          Length = 1373

 Score =  119 bits (60), Expect = 7e-24
 Identities = 141/168 (83%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || 
Sbjct: 221 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 280

                                                                       
Query: 268 gccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaatg 327
           || |||||||||||||| |||||| | | | |    || || |||||| | || ||||||
Sbjct: 281 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 340

                                                           
Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
           ||||| ||||||||||| ||||| || ||||| |||  ||||||||||
Sbjct: 341 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagag 388



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                       
Query: 85  ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 144
           ||||||||||||||||||  ||||||| |||  ||||||||||||||||| |||||||||
Sbjct: 92  ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 151

                            
Query: 145 acgtggtcggccacggg 161
           ||||||||||| |||||
Sbjct: 152 acgtggtcggcgacggg 168
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>dbj|AK101129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025P19, full
           insert sequence
          Length = 1262

 Score =  119 bits (60), Expect = 7e-24
 Identities = 141/168 (83%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || 
Sbjct: 221 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 280

                                                                       
Query: 268 gccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaatg 327
           || |||||||||||||| |||||| | | | |    || || |||||| | || ||||||
Sbjct: 281 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 340

                                                           
Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
           ||||| ||||||||||| ||||| || ||||| |||  ||||||||||
Sbjct: 341 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagag 388



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 85  ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 144
           ||||||||||| |||| |  || |||| |||  ||||||||||||||||  |||||||||
Sbjct: 92  ggagcaatggaaaggggggggcgggtgaggaagccgcacacctcgacgggggacctgctc 151

                      
Query: 145 acgtggtcggc 155
           |||||||||||
Sbjct: 152 acgtggtcggc 162
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>gb|AY107167.1| Zea mays PCO149856 mRNA sequence
          Length = 1497

 Score =  103 bits (52), Expect = 4e-19
 Identities = 139/168 (82%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| |  ||||| ||||| || ||||||||||||||||| | |||||| || 
Sbjct: 251 ctcaagccggccgccgggattacgcctgcgatgttcggcgcgccggtcaccgagcaggag 310

                                                                       
Query: 268 gccgaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaaggaaatg 327
           ||||||||||||||||| |||||||||| | |    ||||| || ||| |||| || |||
Sbjct: 311 gccgaggatctgagcaagagtgaaaggaaattttgctccggatcgaagttgaaagagatg 370

                                                           
Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
           | |||||||||||| || ||||| |||||||| ||| |||| ||||||
Sbjct: 371 agtgggagtgggattttcgctgagaagagtgaaaatggtgactcagag 418



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                       
Query: 88  gcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacg 147
           |||||||||||||||  |||||| ||||  |||||||||   ||||||||||| ||| | 
Sbjct: 134 gcaatggagagggcggtgccggttcggaagccgcacaccagcacggccgaccttctctcc 193

                        
Query: 148 tggtcggccacgg 160
           |||||||||||||
Sbjct: 194 tggtcggccacgg 206
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>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15,
              complete sequence
          Length = 143109

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                          
Query: 85     ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 144
              ||||||||||||||||||  ||||||| |||  ||||||||||||||||| |||||||||
Sbjct: 110532 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 110473

                               
Query: 145    acgtggtcggccacggg 161
              ||||||||||| |||||
Sbjct: 110472 acgtggtcggcgacggg 110456



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                          
Query: 212    agccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgacgccg 271
              ||||||| ||||||||||||||||| |||||||||||||||||||||||| | || || |
Sbjct: 110262 agccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggaggcgg 110203

                           
Query: 272    aggatctgagcaa 284
              |||||||||||||
Sbjct: 110202 aggatctgagcaa 110190



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                    
Query: 322    gaaatgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
              ||||||||||| ||||||||||| ||||| || ||||| |||  ||||||||||
Sbjct: 109058 gaaatgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagag 109005
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                            
Query: 85       ggagcaatggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctc 144
                ||||||||||||||||||  ||||||| |||  ||||||||||||||||| |||||||||
Sbjct: 22773336 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 22773277

                                 
Query: 145      acgtggtcggccacggg 161
                ||||||||||| |||||
Sbjct: 22773276 acgtggtcggcgacggg 22773260



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                            
Query: 212      agccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgacgccg 271
                ||||||| ||||||||||||||||| |||||||||||||||||||||||| | || || |
Sbjct: 22773066 agccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggaggcgg 22773007

                             
Query: 272      aggatctgagcaa 284
                |||||||||||||
Sbjct: 22773006 aggatctgagcaa 22772994



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 322      gaaatgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagag 375
                ||||||||||| ||||||||||| ||||| || ||||| |||  ||||||||||
Sbjct: 22771862 gaaatgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagag 22771809
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>ref|XM_466380.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1150

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| || |||||||||||||| |||||||| |||||||||| ||| |  || 
Sbjct: 189 ctcaagccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgacctggag 248

                        
Query: 268 gccgaggatctga 280
           |||||||||||||
Sbjct: 249 gccgaggatctga 261



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 310 tcaaagatgaaggaaatgactgggagtgggatattt 345
           |||||||||||||||||||| |||||||| ||||||
Sbjct: 285 tcaaagatgaaggaaatgaccgggagtggaatattt 320



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           ||||||||||||  |||||||||||   ||||| |||||||||||| ||||||||  |||
Sbjct: 57  atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 116

               
Query: 151 tcgg 154
           ||||
Sbjct: 117 tcgg 120
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>dbj|AK059246.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G05, full
           insert sequence
          Length = 1150

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267
           ||||||||||| || |||||||||||||| |||||||| |||||||||| ||| |  || 
Sbjct: 189 ctcaagccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgacctggag 248

                        
Query: 268 gccgaggatctga 280
           |||||||||||||
Sbjct: 249 gccgaggatctga 261



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 310 tcaaagatgaaggaaatgactgggagtgggatattt 345
           |||||||||||||||||||| |||||||| ||||||
Sbjct: 285 tcaaagatgaaggaaatgaccgggagtggaatattt 320



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           ||||||||||||  |||||||||||   ||||| |||||||||||| ||||||||  |||
Sbjct: 57  atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 116

               
Query: 151 tcgg 154
           ||||
Sbjct: 117 tcgg 120
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                            
Query: 212      agccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgacgccg 271
                ||||||| || |||||||||||||| |||||||| |||||||||| ||| |  || ||||
Sbjct: 22065976 agccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgacctggaggccg 22065917

                         
Query: 272      aggatctga 280
                |||||||||
Sbjct: 22065916 aggatctga 22065908



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 91       atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
                ||||||||||||  |||||||||||   ||||| |||||||||||| ||||||||  |||
Sbjct: 22066221 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 22066162

                    
Query: 151      tcgg 154
                ||||
Sbjct: 22066161 tcgg 22066158



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 310      tcaaagatgaaggaaatgactgggagtgggatattt 345
                |||||||||||||||||||| |||||||| ||||||
Sbjct: 22064843 tcaaagatgaaggaaatgaccgggagtggaatattt 22064808



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 240      gttcggcgcgccggtgagcgag 261
                ||||||||||||||||||||||
Sbjct: 31843412 gttcggcgcgccggtgagcgag 31843433
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>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0703B01
          Length = 137445

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 212   agccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgacgccg 271
             ||||||| || |||||||||||||| |||||||| |||||||||| ||| |  || ||||
Sbjct: 39875 agccggccggtgggatcacgccggcgatgttcggagcgccggtgaccgacctggaggccg 39816

                      
Query: 272   aggatctga 280
             |||||||||
Sbjct: 39815 aggatctga 39807



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 91    atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
             ||||||||||||  |||||||||||   ||||| |||||||||||| ||||||||  |||
Sbjct: 40120 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 40061

                 
Query: 151   tcgg 154
             ||||
Sbjct: 40060 tcgg 40057



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 310   tcaaagatgaaggaaatgactgggagtgggatattt 345
             |||||||||||||||||||| |||||||| ||||||
Sbjct: 38742 tcaaagatgaaggaaatgaccgggagtggaatattt 38707
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>gb|AY596580.1| Saccharum officinarum clone SCCCCL3120B06, complete sequence
          Length = 1308

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 91   atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
            |||||| ||||| |||||||| ||||| | |||||||| ||||||||||| ||| |||||
Sbjct: 1218 atggagcgggcggcgccggtgaggagctcccacacctccacggccgacctactcgcgtgg 1159
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>gb|AY105912.1| Zea mays PCO095569 mRNA sequence
          Length = 1283

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           |||||| ||||| |||||||| ||||| | |||||||| ||||||||||| ||| |||||
Sbjct: 132 atggagcgggcggcgccggtgaggagctcccacacctccacggccgacctactcgcgtgg 191
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>ref|XM_479197.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1305

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           ||||||||| || |||||||| |||   | ||||| ||||||||||||||||| ||||||
Sbjct: 180 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 239
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>gb|AY596563.1| Saccharum officinarum clone SCJLLR2013G10, complete sequence
          Length = 1194

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           |||||||||||| | || ||| ||||  | |||||||||||||||| ||||||| |||||
Sbjct: 103 atggagagggcggcccccgtgaggagttcccacacctcgacggccggcctgctcgcgtgg 162
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                            
Query: 91       atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
                ||||||||| || |||||||| |||   | ||||| ||||||||||||||||| ||||||
Sbjct: 25753994 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 25753935
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>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0524E08
          Length = 154696

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                         
Query: 91    atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
             ||||||||| || |||||||| |||   | ||||| ||||||||||||||||| ||||||
Sbjct: 71156 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 71097
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>dbj|AK063642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G12, full
           insert sequence
          Length = 1305

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           ||||||||| || |||||||| |||   | ||||| ||||||||||||||||| ||||||
Sbjct: 180 atggagaggccggcgccggtgaggaagtcccacacgtcgacggccgacctgctgacgtgg 239
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 243    cggcgcgccggtgagcgagcacg 265
              |||||||||||||||||||||||
Sbjct: 908311 cggcgcgccggtgagcgagcacg 908333
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>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2
           mRNA
          Length = 1129

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 240 gttcggcgcgccggtgagcgag 261
           ||||||||||||||||||||||
Sbjct: 344 gttcggcgcgccggtgagcgag 323
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>ref|XM_467873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1127

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 240 gttcggcgcgccggtgagcgag 261
           ||||||||||||||||||||||
Sbjct: 342 gttcggcgcgccggtgagcgag 321
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>ref|XM_467872.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 240 gttcggcgcgccggtgagcgag 261
           ||||||||||||||||||||||
Sbjct: 343 gttcggcgcgccggtgagcgag 322
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 259     gagcacgacgccgaggatctga 280
               ||||||||||||||||||||||
Sbjct: 1812777 gagcacgacgccgaggatctga 1812756
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0471A11
          Length = 157740

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 240  gttcggcgcgccggtgagcgag 261
            ||||||||||||||||||||||
Sbjct: 4413 gttcggcgcgccggtgagcgag 4434
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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 240    gttcggcgcgccggtgagcgag 261
              ||||||||||||||||||||||
Sbjct: 139210 gttcggcgcgccggtgagcgag 139231
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>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full
           insert sequence
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 240 gttcggcgcgccggtgagcgag 261
           ||||||||||||||||||||||
Sbjct: 343 gttcggcgcgccggtgagcgag 322
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>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full
           insert sequence
          Length = 1128

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 240 gttcggcgcgccggtgagcgag 261
           ||||||||||||||||||||||
Sbjct: 344 gttcggcgcgccggtgagcgag 323
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>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full
           insert sequence
          Length = 1127

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 240 gttcggcgcgccggtgagcgag 261
           ||||||||||||||||||||||
Sbjct: 342 gttcggcgcgccggtgagcgag 321
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>gb|AE005704.1| Caulobacter crescentus CB15 section 30 of 359 of the complete
           genome
          Length = 9704

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 228 cacgccggccatgttcggcgcgccggtga 256
           ||||||||||||  |||||||||||||||
Sbjct: 911 cacgccggccattgtcggcgcgccggtga 883
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>ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa8576 predicted mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 248 cgccggtgagcgagcacgacgccg 271
           |||||| |||||||||||||||||
Sbjct: 535 cgccggcgagcgagcacgacgccg 512
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>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete
             sequence
          Length = 137709

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   cacacctcgacggccgacct 140
             ||||||||||||||||||||
Sbjct: 38263 cacacctcgacggccgacct 38244
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 121      cacacctcgacggccgacct 140
                ||||||||||||||||||||
Sbjct: 15299085 cacacctcgacggccgacct 15299104
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>emb|Z70756.1|CET06E4 Caenorhabditis elegans Cosmid T06E4, complete sequence
          Length = 38773

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tgggatatttgctgaaaaga 355
             ||||||||||||||||||||
Sbjct: 37634 tgggatatttgctgaaaaga 37653
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>gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete sequence
          Length = 38247

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     agcagcagcagcacctcgag 20
             ||||||||||||||||||||
Sbjct: 24569 agcagcagcagcacctcgag 24550
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>gb|AC146852.15| Medicago truncatula clone mth2-58k21, complete sequence
          Length = 145314

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agcagcagcagcacctcgag 20
             ||||||||||||||||||||
Sbjct: 47363 agcagcagcagcacctcgag 47382
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>gb|AC135320.6| Medicago truncatula clone mth2-28e9, complete sequence
          Length = 108644

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     agcagcagcagcacctcgag 20
             ||||||||||||||||||||
Sbjct: 43548 agcagcagcagcacctcgag 43529
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>emb|AL109800.25|HSDA64P14 Human DNA sequence from clone RP6-64P14 on chromosome Xq24-25, complete
              sequence
          Length = 163764

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    aggatctgagcaacagtgaa 291
              ||||||||||||||||||||
Sbjct: 143257 aggatctgagcaacagtgaa 143238
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>emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 5/7
          Length = 329861

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tgggatatttgctgaaaaga 355
             ||||||||||||||||||||
Sbjct: 67621 tgggatatttgctgaaaaga 67640
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>gb|AC018371.10| Homo sapiens chromosome 18, clone RP11-552O4, complete sequence
          Length = 170123

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    aagatgaaggaaatgactgg 332
              ||||||||||||||||||||
Sbjct: 121056 aagatgaaggaaatgactgg 121075
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>gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold
          Length = 230282

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 347    ctgaaaagagtgagaatagtgatt 370
              ||||||||||| ||||||||||||
Sbjct: 223226 ctgaaaagagtcagaatagtgatt 223203
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 121      cacacctcgacggccgacct 140
                ||||||||||||||||||||
Sbjct: 15293619 cacacctcgacggccgacct 15293638
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 248      cgccggtgagcgagcacgacgccg 271
                |||||| |||||||||||||||||
Sbjct: 10004178 cgccggcgagcgagcacgacgccg 10004155
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1085F09
          Length = 132713

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 248   cgccggtgagcgagcacgacgccg 271
             |||||| |||||||||||||||||
Sbjct: 84460 cgccggcgagcgagcacgacgccg 84437
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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0003H10
          Length = 142418

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 248    cgccggtgagcgagcacgacgccg 271
              |||||| |||||||||||||||||
Sbjct: 139944 cgccggcgagcgagcacgacgccg 139921
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>dbj|AK101680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058I20, full
           insert sequence
          Length = 1135

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 cacacctcgacggccgacct 140
           ||||||||||||||||||||
Sbjct: 70  cacacctcgacggccgacct 89
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>dbj|AK068724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161E13, full
           insert sequence
          Length = 1181

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 cacacctcgacggccgacct 140
           ||||||||||||||||||||
Sbjct: 73  cacacctcgacggccgacct 92
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>dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A01, full
            insert sequence
          Length = 2351

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 248  cgccggtgagcgagcacgacgccg 271
            |||||| |||||||||||||||||
Sbjct: 1253 cgccggcgagcgagcacgacgccg 1230
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>dbj|AK060532.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A03, full
           insert sequence
          Length = 1307

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 cacacctcgacggccgacct 140
           ||||||||||||||||||||
Sbjct: 91  cacacctcgacggccgacct 110
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>gb|AY106079.1| Zea mays PCO068745 mRNA sequence
          Length = 938

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                       
Query: 91  atggagagggcgacgccggtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150
           |||||||| ||| | || ||| ||||| | |||||||||||||| | ||||||| |||||
Sbjct: 118 atggagagagcggcccccgtgaggagctcccacacctcgacggctggcctgctcgcgtgg 177
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>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 248   cgccggtgagcgagcacgacgccg 271
             |||||| |||||||||||||||||
Sbjct: 31735 cgccggcgagcgagcacgacgccg 31712
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>emb|AL772366.7| Mouse DNA sequence from clone RP23-171C7 on chromosome 2, complete
             sequence
          Length = 167389

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   aaggaaatgactgggagtgg 338
             ||||||||||||||||||||
Sbjct: 91201 aaggaaatgactgggagtgg 91182
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0036E02
          Length = 145931

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 248   cgccggtgagcgagcacgacgccg 271
             |||||| |||||||||||||||||
Sbjct: 98671 cgccggcgagcgagcacgacgccg 98648


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,751,155
Number of Sequences: 3902068
Number of extensions: 2751155
Number of successful extensions: 56221
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55863
Number of HSP's gapped (non-prelim): 358
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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