ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5621_ARATH (O81488) PHD finger protein At5g26210 158 7e-39
2CAN12_MOUSE (Q9ER56) Calpain-12 (EC 3.4.22.-) 29 5.1
3CG21_CANAL (P47829) G2/mitotic-specific cyclin CYB1 29 5.1
4B3GT3_RAT (Q6AY39) Beta-1,3-galactosyltransferase 3 (EC 2.4.1.79... 28 8.7
5CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate... 28 8.7

>Y5621_ARATH (O81488) PHD finger protein At5g26210|
          Length = 255

 Score =  158 bits (399), Expect = 7e-39
 Identities = 76/106 (71%), Positives = 84/106 (79%)
 Frame = +1

Query: 145 AGGAYVARTAEEVFRDLRGRRAGMIKALTEDVDKFFKLCDPEKENLCLYGYPNETWEVTL 324
           AGGAY  RT EEVFRD +GRRAGMIKALT DV +FF+LCDPEKENLCLYG+PNE WEV L
Sbjct: 3   AGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNL 62

Query: 325 XXXXXXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLSVAFY 462
                        LGINFARDGM EKDWL+LVAVHSD+WLL+VAF+
Sbjct: 63  PAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFF 108



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>CAN12_MOUSE (Q9ER56) Calpain-12 (EC 3.4.22.-)|
          Length = 720

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 357 FRDLWGHFLSWQGHF 313
           F++LWGH +SWQ  F
Sbjct: 616 FQELWGHLMSWQATF 630



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>CG21_CANAL (P47829) G2/mitotic-specific cyclin CYB1|
          Length = 492

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 275 SFSGSQSLKNLSTSSVRALIMPARRPRRSRKTSSAVRATYAPPAPAPSMGGRRQ 114
           S S S +  N   + + +L +P+R P++ + T S+         P P +G R Q
Sbjct: 122 SSSNSSNNNNNDANRLASLAVPSRLPQKRQATESSTNLVEKLRVPQPEVGERSQ 175



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>B3GT3_RAT (Q6AY39) Beta-1,3-galactosyltransferase 3 (EC 2.4.1.79)|
           (Beta-1,3-GalTase 3) (Beta3Gal-T3) (b3Gal-T3)
           (Galactosylgalactosylglucosylceramide
           beta-D-acetyl-galactosaminyltransferase)
           (UDP-N-acetylgalactosamine:globotriaosylceramide
           beta-1,3-N-ace
          Length = 331

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 426 NCN*RQP--ILLIHSIPSEVDS*CWFRDLWGHFLSWQGH 316
           NC+ + P  ++L+ S PS+V +    R  WG   +W GH
Sbjct: 72  NCSQQNPFLVILVTSRPSDVKARQAIRVTWGEKKTWWGH 110



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>CAH1_FLALI (P46512) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase|
           1)
          Length = 330

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = -3

Query: 275 SFSGSQSLKNLSTSSVRALIMPARRPRRSRKTSSAV--------RATYAPPAP 141
           SF  + SLK  STSS R+ ++ AR    S  +SS+            +A PAP
Sbjct: 13  SFVNASSLKKSSTSSARSGVLSARFTCNSSSSSSSATPPSLIRNEPVFAAPAP 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,082,002
Number of Sequences: 219361
Number of extensions: 753121
Number of successful extensions: 2556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2552
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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