ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GRPE2_PONPY (Q5R435) GrpE protein homolog 2, mitochondrial precu... 30 1.7
2GRPE2_HUMAN (Q8TAA5) GrpE protein homolog 2, mitochondrial precu... 30 1.7
3Y1699_PYRHO (O59362) UPF0095 protein PH1699 28 4.8

>GRPE2_PONPY (Q5R435) GrpE protein homolog 2, mitochondrial precursor|
           (Mt-GrpE#2)
          Length = 225

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 166 QTASRVCRTEHPPEARGPPRARVAL 92
           +TA   CR+E PP+  GPP A  AL
Sbjct: 38  RTAGEDCRSEDPPDELGPPLAERAL 62



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>GRPE2_HUMAN (Q8TAA5) GrpE protein homolog 2, mitochondrial precursor|
           (Mt-GrpE#2)
          Length = 225

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 166 QTASRVCRTEHPPEARGPPRARVAL 92
           +TA   CR+E PP+  GPP A  AL
Sbjct: 38  RTAGEDCRSEDPPDELGPPLAERAL 62



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>Y1699_PYRHO (O59362) UPF0095 protein PH1699|
          Length = 447

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 111 PEPASLLLEKKKQIFADVHAAGPVFAID 28
           P+P +LLL++ K I A+VH    + AI+
Sbjct: 368 PDPVALLLDENKNIIAEVHTRDLLNAIE 395


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,533,912
Number of Sequences: 219361
Number of extensions: 359839
Number of successful extensions: 1038
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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