Clone Information

BLAST Search Result

Clone Name	bast40e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FBRL_CANGA (Q6FN88) Fibrillarin	73	2e-13
2	FBRL2_ARATH (Q94AH9) Fibrillarin-2 (Fibrillarin-like protein)	71	7e-13
3	FBRL1_ARATH (Q9FEF8) Fibrillarin-1 (SKP1-interacting partner 7)	71	7e-13
4	FBRL_ASHGO (Q756P0) Fibrillarin	69	2e-12
5	FBRL_YEAST (P15646) Fibrillarin (Nucleolar protein 1)	67	8e-12
6	FBRL_CAEEL (Q22053) Fibrillarin	67	1e-11
7	FBRL_SCHPO (P35551) Fibrillarin	66	2e-11
8	FBRL_DEBHA (Q6BQ34) Fibrillarin	66	2e-11
9	FBRL3_ARATH (Q9FHB3) Putative fibrillarin-3	65	3e-11
10	FBRL_XENLA (P22232) Fibrillarin	65	4e-11
11	FBRL_RAT (P22509) Fibrillarin (Nucleolar protein 1)	63	1e-10
12	FBRL_MOUSE (P35550) Fibrillarin (Nucleolar protein 1)	63	1e-10
13	FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma an...	63	1e-10
14	FBRL_DROME (Q9W1V3) Fibrillarin	63	2e-10
15	FBRL_DROER (Q8I1F4) Fibrillarin	63	2e-10
16	FBRL_LEIMA (P35549) Fibrillarin	58	6e-09
17	FBRL_NEUCR (Q9HE26) Fibrillarin	58	6e-09
18	FBRL_GIALA (Q24957) Fibrillarin	52	3e-07
19	FBRL_TETTH (Q27200) Fibrillarin	50	1e-06
20	FBRL_ENCCU (Q8SR42) Fibrillarin	45	3e-05
21	FLPA_NANEQ (Q74N89) Fibrillarin-like pre-rRNA-processing protein	33	0.12
22	FLPA_PYRAE (Q8ZTI9) Fibrillarin-like pre-rRNA-processing protein	32	0.27
23	FLPA_PYRAB (Q9V2L5) Fibrillarin-like pre-rRNA-processing protein	31	0.61
24	FLPA_PYRFU (Q8U4M2) Fibrillarin-like pre-rRNA-processing protein	31	0.80
25	FLPA_AERPE (Q9Y9U3) Fibrillarin-like pre-rRNA-processing protein	30	1.0
26	FLPA_PYRHO (O57811) Fibrillarin-like pre-rRNA-processing protein	30	1.4
27	NK2R_BOVIN (P05363) Substance-K receptor (SKR) (Neurokinin A rec...	30	1.4
28	NK2R_HUMAN (P21452) Substance-K receptor (SKR) (Neurokinin A rec...	30	1.4
29	NK2R_RAT (P16610) Substance-K receptor (SKR) (Neurokinin A recep...	30	1.4
30	NK2R_CANFA (Q5DUB2) Substance-K receptor (SKR) (Neurokinin A rec...	29	2.3
31	FLPA_PYRKO (Q5JFN1) Fibrillarin-like pre-rRNA-processing protein	29	2.3
32	NK2R_MOUSE (P30549) Substance-K receptor (SKR) (Neurokinin A rec...	29	3.0
33	NK2R_MESAU (P51144) Substance-K receptor (SKR) (Neurokinin A rec...	28	5.2
34	DPO1_HAEIN (P43741) DNA polymerase I (EC 2.7.7.7) (POL I)	28	5.2
35	NK2R_CAVPO (Q64077) Substance-K receptor (SKR) (Neurokinin A rec...	28	5.2
36	FLPA_SULTO (Q971W2) Fibrillarin-like pre-rRNA-processing protein	28	5.2
37	NK2R_RABIT (P79218) Substance-K receptor (SKR) (Neurokinin A rec...	28	6.8
38	YHIP_ECOLI (P36837) Inner membrane transporter yhiP	27	8.8
39	FLPA_SULAC (Q9P9M0) Fibrillarin-like pre-rRNA-processing protein	27	8.8

>FBRL_CANGA (Q6FN88) Fibrillarin|
          Length = 323

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G KGGAKVV+ PHKHDGV+IA+ KED L TKNM  GESVYGEK
Sbjct: 75  GAKGGAKVVIEPHKHDGVYIARGKEDLLVTKNMAPGESVYGEK 117

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>FBRL2_ARATH (Q94AH9) Fibrillarin-2 (Fibrillarin-like protein)|
          Length = 320

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           GMKGG+KV+V PH+H GVFIAK KEDAL TKN+V GE+VY EK
Sbjct: 73  GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEK 115

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>FBRL1_ARATH (Q9FEF8) Fibrillarin-1 (SKP1-interacting partner 7)|
          Length = 308

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           GMKGG+KV+V PH+H GVFIAK KEDAL TKN+V GE+VY EK
Sbjct: 62  GMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEK 104

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>FBRL_ASHGO (Q756P0) Fibrillarin|
          Length = 326

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 32/43 (74%), Positives = 35/43 (81%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G KGGAKVV+ PHKH GVFIA+ KED L TKN+  GESVYGEK
Sbjct: 80  GAKGGAKVVIEPHKHAGVFIARGKEDLLVTKNVAPGESVYGEK 122

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>FBRL_YEAST (P15646) Fibrillarin (Nucleolar protein 1)|
          Length = 327

 Score = 67.4 bits (163), Expect = 8e-12
 Identities = 30/43 (69%), Positives = 35/43 (81%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G +GGAKVV+ PH+H GV+IA+ KED L TKNM  GESVYGEK
Sbjct: 79  GARGGAKVVIEPHRHAGVYIARGKEDLLVTKNMAPGESVYGEK 121

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>FBRL_CAEEL (Q22053) Fibrillarin|
          Length = 352

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 32/43 (74%), Positives = 34/43 (79%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           GM+GG  VVV PH+  GVFI K KEDAL TKNMV GESVYGEK
Sbjct: 110 GMRGGKTVVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEK 152

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>FBRL_SCHPO (P35551) Fibrillarin|
          Length = 305

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G KGGAKV++ PH+H GVFIA+ KED L T+N+V GESVY EK
Sbjct: 66  GAKGGAKVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEK 108

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>FBRL_DEBHA (Q6BQ34) Fibrillarin|
          Length = 329

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G +GGAKVV+ PH+H GVFIA+ KED L T+N+  GESVYGEK
Sbjct: 81  GARGGAKVVIEPHRHAGVFIARGKEDLLVTRNIAPGESVYGEK 123

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>FBRL3_ARATH (Q9FHB3) Putative fibrillarin-3|
          Length = 292

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 28/43 (65%), Positives = 36/43 (83%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G+KGG+KV+V PH+H GVF+AK+K DAL TKN+V GE +Y EK
Sbjct: 52  GIKGGSKVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEK 94

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>FBRL_XENLA (P22232) Fibrillarin|
          Length = 323

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G   G KV+V PH+H+G+FI + KEDAL TKN+V GESVYGEK
Sbjct: 81  GFGAGRKVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEK 123

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>FBRL_RAT (P22509) Fibrillarin (Nucleolar protein 1)|
          Length = 327

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G + G  V+V PH+H+GVFI + KEDAL TKN+V GESVYGEK
Sbjct: 85  GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEK 127

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>FBRL_MOUSE (P35550) Fibrillarin (Nucleolar protein 1)|
          Length = 327

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G + G  V+V PH+H+GVFI + KEDAL TKN+V GESVYGEK
Sbjct: 85  GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEK 127

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>FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma antigen)|
          Length = 321

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G + G  V+V PH+H+GVFI + KEDAL TKN+V GESVYGEK
Sbjct: 79  GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEK 121

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>FBRL_DROME (Q9W1V3) Fibrillarin|
          Length = 344

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G KGG  V + PH+H+GVFIA+ KEDAL T+N V G  VYGEK
Sbjct: 104 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEK 146

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>FBRL_DROER (Q8I1F4) Fibrillarin|
          Length = 345

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +3

Query: 282 GMKGGAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G KGG  V + PH+H+GVFIA+ KEDAL T+N V G  VYGEK
Sbjct: 105 GFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEK 147

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>FBRL_LEIMA (P35549) Fibrillarin|
          Length = 297

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 29/40 (72%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
 Frame = +3

Query: 294 GAKVVVVPHK-HDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           GAKV+V PH  H GVFI+KAK D+LCT NMV G SVYGEK
Sbjct: 56  GAKVIVEPHMLHPGVFISKAKTDSLCTLNMVPGISVYGEK 95

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>FBRL_NEUCR (Q9HE26) Fibrillarin|
          Length = 323

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 30/47 (63%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
 Frame = +3

Query: 282 GMKGGA---KVVVVPHKHDGVFIAKA-KEDALCTKNMVAGESVYGEK 410
           G KGGA   KV+V PH+H GVF+A+  KED L T N+V GESVYGEK
Sbjct: 70  GAKGGAAGKKVIVEPHRHKGVFVARGGKEDLLATVNLVPGESVYGEK 116

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>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 GMKGGAKVVVVPH-KHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G KGGAK +V PH K+DG+FI+  + D L TK++  G +VYGEK
Sbjct: 87  GFKGGAKTMVKPHPKYDGIFISHGRGDVLVTKSLAPGVAVYGEK 130

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>FBRL_TETTH (Q27200) Fibrillarin|
          Length = 294

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
 Frame = +3

Query: 282 GMKG--GAKVVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           G KG  G K ++V H+ +GVFI K +++AL TKN   GESVY EK
Sbjct: 56  GAKGPRGPKTIIVKHRLEGVFICKGQQEALVTKNFFPGESVYNEK 100

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>FBRL_ENCCU (Q8SR42) Fibrillarin|
          Length = 291

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = +3

Query: 300 KVVVVPH-KHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           KV+V PH +  GV+I++ KED L T+N+V G SVYGEK
Sbjct: 46  KVLVEPHPRFPGVYISRGKEDLLLTRNLVPGVSVYGEK 83

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>FLPA_NANEQ (Q74N89) Fibrillarin-like pre-rRNA-processing protein|
          Length = 232

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 303 VVVVPHKHDGVFIAKAKEDALCTKNMVAGESVYGEK 410
           + V PHK +GV+I   K   L TKN+V G+ VY E+
Sbjct: 7   IKVKPHKLEGVYIGNNK--FLLTKNLVKGQKVYTER 40

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>FLPA_PYRAE (Q8ZTI9) Fibrillarin-like pre-rRNA-processing protein|
          Length = 235

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +3

Query: 303 VVVVPH-KHDGVFIAKAKE--DALCTKNMVAGESVYGEK 410
           V V PH +H GV++ K ++  + + TKN+  G  VYGE+
Sbjct: 6   VEVKPHERHYGVYVVKFEDGTERIATKNLTPGRRVYGER 44

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>FLPA_PYRAB (Q9V2L5) Fibrillarin-like pre-rRNA-processing protein|
          Length = 227

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 VVVVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEK 410
           V V  HK  GV+I    +  + + TKN+V G+ VYGE+
Sbjct: 2   VEVKKHKFPGVYIVIDDDGSEKIATKNLVPGQRVYGER 39

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>FLPA_PYRFU (Q8U4M2) Fibrillarin-like pre-rRNA-processing protein|
          Length = 227

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 VVVVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEK 410
           V V  HK  GV++    +  + + TKN+V G+ VYGE+
Sbjct: 2   VEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGER 39

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>FLPA_AERPE (Q9Y9U3) Fibrillarin-like pre-rRNA-processing protein|
          Length = 233

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
 Frame = +3

Query: 306 VVVPHKHD---GVFIAKAKEDAL--CTKNMVAGESVYGEK 410
           VV   +HD   GV++ + ++ +L   TKN+V G+ VYGE+
Sbjct: 4   VVSVREHDRWRGVYVVELEDGSLRIATKNLVPGQRVYGER 43

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>FLPA_PYRHO (O57811) Fibrillarin-like pre-rRNA-processing protein|
          Length = 227

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 303 VVVVPHKHDGVF--IAKAKEDALCTKNMVAGESVYGEK 410
           V V  HK  GV+  I     + + TKN+V G+ VYGE+
Sbjct: 2   VEVKKHKFPGVYTVIDDDGSERIATKNLVPGQRVYGER 39

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>NK2R_BOVIN (P05363) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 384

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTTT 302
           PF P   +P T  ++     +ALA+  P C + T TT
Sbjct: 138 PFQPRLSAPGTRAVIAGIWLVALALAFPQCFYSTITT 174

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>NK2R_HUMAN (P21452) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 398

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305
           PF P   +P+T  ++     +ALA+ +P C + T T
Sbjct: 138 PFQPRLSAPSTKAVIAGIWLVALALASPQCFYSTVT 173

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>NK2R_RAT (P16610) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 390

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305
           PF P   +P+T  ++     +ALA+ +P C + T T
Sbjct: 138 PFQPRLSAPSTKAIIAGIWLVALALASPQCFYSTIT 173

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>NK2R_CANFA (Q5DUB2) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 384

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305
           PF P   +P T  ++     LALA+  P C + T T
Sbjct: 138 PFQPRLSAPGTRAVIAGIWLLALALAFPQCFYSTIT 173

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>FLPA_PYRKO (Q5JFN1) Fibrillarin-like pre-rRNA-processing protein|
          Length = 226

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 309 VVPHKHDGVFIAKAKE--DALCTKNMVAGESVYGEK 410
           V  H+  GV+I    +  + + TKN+V G+ VYGE+
Sbjct: 3   VKKHRFPGVYIVIDDDGSEKIATKNLVPGQRVYGER 38

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>NK2R_MOUSE (P30549) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 384

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305
           PF P   +P+T  ++     +ALA+ +P C + T T
Sbjct: 138 PFQPRLSAPSTKAVIAVIWLVALALASPQCFYSTIT 173

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>NK2R_MESAU (P51144) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 384

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305
           PF P   +P T   +     +ALA+ +P C + T T
Sbjct: 138 PFQPRLSAPITKATIAGIWLVALALASPQCFYSTIT 173

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>DPO1_HAEIN (P43741) DNA polymerase I (EC 2.7.7.7) (POL I)|
          Length = 930

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 9/46 (19%)
 Frame = -3

Query: 410 LLAVDGLAGDHVLGT---------ERVLLGLGDEDAVVLVGHDDHL 300
           LL V+G+  D V+GT         ++VL+  GD+D   LV  DD++
Sbjct: 106 LLVVEGIEADDVIGTLALQASSLGKKVLISTGDKDMAQLV--DDNI 149

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>NK2R_CAVPO (Q64077) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 402

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305
           PF P   +P+T  ++     +ALA+  P C + T T
Sbjct: 138 PFQPRLSAPSTKAVIGGIWLVALALAFPQCFYSTIT 173

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>FLPA_SULTO (Q971W2) Fibrillarin-like pre-rRNA-processing protein|
          Length = 233

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 363 LCTKNMVAGESVYGEK 410
           LCTKN+  G SVYGE+
Sbjct: 27  LCTKNLAPGFSVYGER 42

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>NK2R_RABIT (P79218) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 384

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 412 PFSP*TDSPATMFLVQSASSLALAMKTPSCLWGTTT 305
           PF P    P T  ++     +ALA+  P C + T T
Sbjct: 138 PFQPRLSGPGTKAVIAGIWLVALALAFPQCFYSTIT 173

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>YHIP_ECOLI (P36837) Inner membrane transporter yhiP|
          Length = 489

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 410 LLAVDGLAGDHVLGTERVLL 351
           L+++ G  GDH+LGT+R ++
Sbjct: 66  LISIGGYVGDHLLGTKRTIV 85

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>FLPA_SULAC (Q9P9M0) Fibrillarin-like pre-rRNA-processing protein|
          Length = 231

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 363 LCTKNMVAGESVYGEK 410
           LCTKN+  G +VYGE+
Sbjct: 27  LCTKNLSPGHNVYGER 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,441,872
Number of Sequences: 219361
Number of extensions: 275885
Number of successful extensions: 867
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

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