ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 240 bits (121), Expect = 4e-60 Identities = 198/224 (88%) Strand = Plus / Minus Query: 259 attactttgccaaggaaggaaaagactgcaatttttcttcagtgtatccagacctgcaga 318 ||||||||| ||||||||||||| |||| | ||| |||||||| |||||||| | || | Sbjct: 3501 attactttggcaaggaaggaaaaaactgtactttctcttcagtatatccagaattacaaa 3442 Query: 319 caccaacaaagatacctttccaaaaaggattggctcanaattatgtccagccctctgggt 378 |||| ||||||||||||||||| |||||||||||||| || | ||||||| ||||||| | Sbjct: 3441 cacctacaaagatacctttccagaaaggattggctcaaaagtttgtccagacctctggat 3382 Query: 379 ctggtattgatctgggattcttttctctggatgagctttcaaatccttcagaggaagtat 438 ||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 3381 ctggtgttgatttgggattcttttctctggatgagctttcaaatccttctggagaagtat 3322 Query: 439 acccactggtagtttatgcagaagcttcaccatctccagaggaa 482 |||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 3321 tcccactggtagtttatgcagaagcttgtccacctccagaggaa 3278 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Minus Query: 84 cccgccctcacgggccccccgcccgagttcgtcggccaccagcaggccctcaaggtgaag 143 ||||| || ||||| || |||||||||||||| | ||||||||||| | ||||||||| Sbjct: 4717 cccgcgctgacggggccgccgcccgagttcgtggatcaccagcaggcgcggaaggtgaag 4658 Query: 144 aacgacatcaacctgcgcaaggacaccatccgcctcgtgcccgacgccggggaccctgac 203 |||||| ||||||||| ||||||||||||||| ||||||||||||| | |||||| ||| Sbjct: 4657 aacgacgtcaacctgcacaaggacaccatccggctcgtgcccgacgtcacggaccccgac 4598 Query: 204 cgccgcctcgtctccttcaccttcgacgcggtcaccgatggcag 247 || ||||||||| |||||||||||||||| || ||||| ||||| Sbjct: 4597 cgacgcctcgtcgccttcaccttcgacgccgtgaccgacggcag 4554
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 240 bits (121), Expect = 4e-60 Identities = 198/224 (88%) Strand = Plus / Minus Query: 259 attactttgccaaggaaggaaaagactgcaatttttcttcagtgtatccagacctgcaga 318 ||||||||| ||||||||||||| |||| | ||| |||||||| |||||||| | || | Sbjct: 121323 attactttggcaaggaaggaaaaaactgtactttctcttcagtatatccagaattacaaa 121264 Query: 319 caccaacaaagatacctttccaaaaaggattggctcanaattatgtccagccctctgggt 378 |||| ||||||||||||||||| |||||||||||||| || | ||||||| ||||||| | Sbjct: 121263 cacctacaaagatacctttccagaaaggattggctcaaaagtttgtccagacctctggat 121204 Query: 379 ctggtattgatctgggattcttttctctggatgagctttcaaatccttcagaggaagtat 438 ||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 121203 ctggtgttgatttgggattcttttctctggatgagctttcaaatccttctggagaagtat 121144 Query: 439 acccactggtagtttatgcagaagcttcaccatctccagaggaa 482 |||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 121143 tcccactggtagtttatgcagaagcttgtccacctccagaggaa 121100 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Minus Query: 84 cccgccctcacgggccccccgcccgagttcgtcggccaccagcaggccctcaaggtgaag 143 ||||| || ||||| || |||||||||||||| | ||||||||||| | ||||||||| Sbjct: 122539 cccgcgctgacggggccgccgcccgagttcgtggatcaccagcaggcgcggaaggtgaag 122480 Query: 144 aacgacatcaacctgcgcaaggacaccatccgcctcgtgcccgacgccggggaccctgac 203 |||||| ||||||||| ||||||||||||||| ||||||||||||| | |||||| ||| Sbjct: 122479 aacgacgtcaacctgcacaaggacaccatccggctcgtgcccgacgtcacggaccccgac 122420 Query: 204 cgccgcctcgtctccttcaccttcgacgcggtcaccgatggcag 247 || ||||||||| |||||||||||||||| || ||||| ||||| Sbjct: 122419 cgacgcctcgtcgccttcaccttcgacgccgtgaccgacggcag 122376
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 240 bits (121), Expect = 4e-60 Identities = 198/224 (88%) Strand = Plus / Minus Query: 259 attactttgccaaggaaggaaaagactgcaatttttcttcagtgtatccagacctgcaga 318 ||||||||| ||||||||||||| |||| | ||| |||||||| |||||||| | || | Sbjct: 19199425 attactttggcaaggaaggaaaaaactgtactttctcttcagtatatccagaattacaaa 19199366 Query: 319 caccaacaaagatacctttccaaaaaggattggctcanaattatgtccagccctctgggt 378 |||| ||||||||||||||||| |||||||||||||| || | ||||||| ||||||| | Sbjct: 19199365 cacctacaaagatacctttccagaaaggattggctcaaaagtttgtccagacctctggat 19199306 Query: 379 ctggtattgatctgggattcttttctctggatgagctttcaaatccttcagaggaagtat 438 ||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 19199305 ctggtgttgatttgggattcttttctctggatgagctttcaaatccttctggagaagtat 19199246 Query: 439 acccactggtagtttatgcagaagcttcaccatctccagaggaa 482 |||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 19199245 tcccactggtagtttatgcagaagcttgtccacctccagaggaa 19199202 Score = 151 bits (76), Expect = 3e-33 Identities = 142/164 (86%) Strand = Plus / Minus Query: 84 cccgccctcacgggccccccgcccgagttcgtcggccaccagcaggccctcaaggtgaag 143 ||||| || ||||| || |||||||||||||| | ||||||||||| | ||||||||| Sbjct: 19200641 cccgcgctgacggggccgccgcccgagttcgtggatcaccagcaggcgcggaaggtgaag 19200582 Query: 144 aacgacatcaacctgcgcaaggacaccatccgcctcgtgcccgacgccggggaccctgac 203 |||||| ||||||||| ||||||||||||||| ||||||||||||| | |||||| ||| Sbjct: 19200581 aacgacgtcaacctgcacaaggacaccatccggctcgtgcccgacgtcacggaccccgac 19200522 Query: 204 cgccgcctcgtctccttcaccttcgacgcggtcaccgatggcag 247 || ||||||||| |||||||||||||||| || ||||| ||||| Sbjct: 19200521 cgacgcctcgtcgccttcaccttcgacgccgtgaccgacggcag 19200478
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 210 ctcgtctccttcaccttcgacg 231 |||||||||||||||||||||| Sbjct: 1429878 ctcgtctccttcaccttcgacg 1429857
>gb|AE004902.1| Pseudomonas aeruginosa PAO1, section 463 of 529 of the complete genome Length = 10570 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 tcgtcggccaccagcaggccct 133 |||||||||||||||||||||| Sbjct: 5979 tcgtcggccaccagcaggccct 6000
>ref|NM_022245.1| Rattus norvegicus cytochrome b-5 (Cyb5), mRNA Length = 751 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 gccaaggaaggaaaagactgc 287 ||||||||||||||||||||| Sbjct: 487 gccaaggaaggaaaagactgc 507
>emb|AL591424.12| Human DNA sequence from clone RP11-424E7 on chromosome 9 Contains the 3' end of the CACNA1B gene for alpha 1B subunit of L type voltage-dependent calcium channel, a pseudogene similar to part of interleukin 9 receptor (ILR9), a tubulin, beta polypeptide 4, member Q (TUBB4Q) pseudogene and five CpG islands, complete sequence Length = 201853 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 tgtccagccctctgggtctgg 382 ||||||||||||||||||||| Sbjct: 89745 tgtccagccctctgggtctgg 89725
>gb|BC086945.1| Rattus norvegicus cytochrome b-5, mRNA (cDNA clone MGC:108694 IMAGE:7322141), complete cds Length = 770 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 gccaaggaaggaaaagactgc 287 ||||||||||||||||||||| Sbjct: 481 gccaaggaaggaaaagactgc 501
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 106 ccgagttcgtcggccaccagcaggc 130 |||||||||||||||| |||||||| Sbjct: 159261 ccgagttcgtcggccagcagcaggc 159285
>gb|AE012498.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 406 of 460 of the complete genome Length = 12898 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 gttcgtcggccaccagcaggc 130 ||||||||||||||||||||| Sbjct: 3916 gttcgtcggccaccagcaggc 3936
>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence Length = 505334 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 gttcgtcggccaccagcaggc 130 ||||||||||||||||||||| Sbjct: 222365 gttcgtcggccaccagcaggc 222385
>gb|AC105123.4| Homo sapiens chromosome 15, clone RP11-94B17, complete sequence Length = 134569 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 tctggtattgatctgggattc 398 ||||||||||||||||||||| Sbjct: 70488 tctggtattgatctgggattc 70468
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 gttcgtcggccaccagcaggc 130 ||||||||||||||||||||| Sbjct: 4544437 gttcgtcggccaccagcaggc 4544457
>gb|AF240617.1|AF240617 Homo sapiens clone 9qtel_2241draft_a sequence Length = 22357 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 tgtccagccctctgggtctgg 382 ||||||||||||||||||||| Sbjct: 183 tgtccagccctctgggtctgg 203
>dbj|D13205.1|RATCYTB5 Rattus norvegicus mRNA for cytochrome b5 Length = 751 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 gccaaggaaggaaaagactgc 287 ||||||||||||||||||||| Sbjct: 487 gccaaggaaggaaaagactgc 507
>gb|AY570705.1| Ostreococcus tauri DBEI (dbe1) gene, complete cds Length = 2556 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 gcctcgtctccttcaccttcgacg 231 |||||||||||||| ||||||||| Sbjct: 214 gcctcgtctccttcgccttcgacg 191
>gb|AC154398.6| Mus musculus chromosome 1, clone RP24-372I12, complete sequence Length = 178664 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 aagtatacccactggtagtt 452 |||||||||||||||||||| Sbjct: 72411 aagtatacccactggtagtt 72392
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster Length = 109528 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 cctcgtgcccgacgccggggaccc 199 ||||||||||| |||||||||||| Sbjct: 77364 cctcgtgcccgtcgccggggaccc 77341
>emb|Z98043.1|HS332O11 Human DNA sequence from clone RP3-332O11 on chromosome 1q24-25 Contains a novel pseudogene, complete sequence Length = 95930 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tggtagtttatgcagaagct 464 |||||||||||||||||||| Sbjct: 44839 tggtagtttatgcagaagct 44820
>emb|AL589745.8| Human DNA sequence from clone RP11-478K15 on chromosome 13 Contains parts of four novel genes, the 5' end of a novel gene and a CpG island, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gttatacattactttgccaa 271 |||||||||||||||||||| Sbjct: 135745 gttatacattactttgccaa 135726
>emb|AL162379.14| Human DNA sequence from clone RP11-426K7 on chromosome 13 Contains part of a novel gene, complete sequence Length = 109757 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gttatacattactttgccaa 271 |||||||||||||||||||| Sbjct: 44433 gttatacattactttgccaa 44414
>emb|AL109953.24|HSDJ746H2 Human DNA sequence from clone RP4-746H2 on chromosome 20 Contains the MRPS11P1 gene for mitochondrial ribosmal protein S11 pseudogene 1, complete sequence Length = 148859 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ctctggatgagctttcaaat 422 |||||||||||||||||||| Sbjct: 145789 ctctggatgagctttcaaat 145770
>gb|AC109211.10| Mus musculus chromosome 8, clone RP23-27N18, complete sequence Length = 212670 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 gattcttttctctggatgag 413 |||||||||||||||||||| Sbjct: 111504 gattcttttctctggatgag 111485
>gb|AE006021.1| Caulobacter crescentus CB15 section 347 of 359 of the complete genome Length = 12511 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgtgcccgacgccggggacc 198 |||||||||||||||||||| Sbjct: 12379 cgtgcccgacgccggggacc 12360
>gb|AC158170.2| Mus musculus BAC clone RP23-261K17 from chromosome 16, complete sequence Length = 176422 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 aaaagactgcaatttttctt 297 |||||||||||||||||||| Sbjct: 144894 aaaagactgcaatttttctt 144875
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cccccgcccgagttcgtcgg 118 |||||||||||||||||||| Sbjct: 3980271 cccccgcccgagttcgtcgg 3980252
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR06C11, complete sequence Length = 174500 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gactgcaatttttcttcagt 301 |||||||||||||||||||| Sbjct: 172368 gactgcaatttttcttcagt 172387
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gcccgagttcgtcggccacc 123 |||||||||||||||||||| Sbjct: 1967850 gcccgagttcgtcggccacc 1967869
>gb|AF246327.1|AF246327 Acidithiobacillus ferroxidans anthranilate synthase component i gene, partial sequence Length = 1919 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 agttcgtcggccaccagcag 128 |||||||||||||||||||| Sbjct: 680 agttcgtcggccaccagcag 661
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgcctcgtgcccgacgccg 192 |||||||||||||||||||| Sbjct: 2663818 ccgcctcgtgcccgacgccg 2663837
>emb|AL807388.8| Mouse DNA sequence from clone RP23-255K14 on chromosome X, complete sequence Length = 157955 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ttgatctgggattcttttct 404 |||||||||||||||||||| Sbjct: 129378 ttgatctgggattcttttct 129397
>emb|AJ334135.1|HSA334135 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-DC9RS Length = 738 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ccgagttcgtcggccaccag 125 |||||||||||||||||||| Sbjct: 144 ccgagttcgtcggccaccag 125
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gactgcaatttttcttcagt 301 |||||||||||||||||||| Sbjct: 40353 gactgcaatttttcttcagt 40372
>gb|AY576273.1| Bacteriophage Phi JL001, complete genome Length = 63649 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tcaaggtgaagaacgacatc 152 |||||||||||||||||||| Sbjct: 20490 tcaaggtgaagaacgacatc 20509
>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete sequence Length = 251192 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gactgcaatttttcttcagt 301 |||||||||||||||||||| Sbjct: 202865 gactgcaatttttcttcagt 202884
>emb|AL135744.4|CNS01DVC Human chromosome 14 DNA sequence BAC R-524O1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195766 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cttcagtgtatccagacctg 314 |||||||||||||||||||| Sbjct: 133489 cttcagtgtatccagacctg 133508
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 caccatccgcctcgtgcccgacgc 190 |||||||||| ||||||||||||| Sbjct: 2397936 caccatccgcgtcgtgcccgacgc 2397913
>gb|AC159315.4| Mus musculus BAC clone RP23-86H21 from chromosome 12, complete sequence Length = 233568 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tctgggattcttttctctgg 408 |||||||||||||||||||| Sbjct: 179758 tctgggattcttttctctgg 179777
>gb|AC144921.12| Mus musculus chromosome 1, clone RP24-214P19, complete sequence Length = 188960 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 aagtatacccactggtagtt 452 |||||||||||||||||||| Sbjct: 162324 aagtatacccactggtagtt 162305 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,160,458 Number of Sequences: 3902068 Number of extensions: 4160458 Number of successful extensions: 105780 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105170 Number of HSP's gapped (non-prelim): 610 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
