>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
           telangiectasia mutated homolog) (AtATM)
          Length = 3856

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +2

Query: 119 TALMMKFPVKSTLPSVASLKARFARFGPLDIDGIRVYWKSHMCRVIYKFQSDXXXXXXXX 298
           T L +KF  + ++PS   L + F+ FGPLD     V  +    +V +   +D        
Sbjct: 689 TILFLKFSSQVSMPSRDDLTSTFSAFGPLDSSETHVSEEFSGAQVAFVSSADAIEAVKSL 748

Query: 299 XXXXMFGQLAPNYYLR 346
                FG+   N+ L+
Sbjct: 749 EKANPFGETLVNFRLQ 764

>TTL11_HUMAN (Q8NHH1) Tubulin--tyrosine ligase-like protein 11|
          Length = 538

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 412 IRALRRGRLWPRVGAGRPSLDAAQVVVGGQLAEHGVGLGVLERGL-CVGLELVDD 251
           +R+L  GR   R+    P LDA    V   L++HG GLG   RG  C G  LV D
Sbjct: 18  MRSLGLGR---RLSLPGPRLDAVTAAVNPSLSDHGNGLGRGTRGSGCSGGSLVAD 69

>DNAA_CAUCR (P35887) Chromosomal replication initiator protein dnaA|
          Length = 490

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 253 DPAHVRLPVHTDAVDVERPEAREPRLEGGHRR 158
           +P  + LPV TDA  V  P A+ PR +G   R
Sbjct: 121 EPIEIVLPVSTDAPTVVAPSAKSPRTQGLQER 152

>SHC1_MOUSE (P98083) SHC transforming protein 1 (SH2 domain protein C1) (Src|
           homology 2 domain-containing transforming protein C1)
          Length = 579

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
 Frame = -2

Query: 379 RVGAGRPSLDAAQVV--------VGGQLA-EHGVGLGVLERGLCVGLELVDDPAHVRL 233
           R GA RP+L +AQ+         +G   A +H V   +L    C G EL DDP++V +
Sbjct: 369 REGAARPTLPSAQMSSHLGATLPIGQHAAGDHEVRKQMLPPPPCPGRELFDDPSYVNI 426

>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
          Length = 3301

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 430 GLHEPQIRALRRGRLWPRVGAGRPSLDAAQVVV---GGQLAEHGVGLGVL 290
           G+ EP    LR GR   R G G P    A+VVV   G +  E G G G L
Sbjct: 78  GVREPVFMRLRVGRQNARNGRGAPEQPNAEVVVQALGSREQEAGQGPGYL 127

>DEF1_BIFLO (Q8G534) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) (Polypeptide|
           deformylase 1)
          Length = 217

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
 Frame = -2

Query: 421 EPQIRALRRGRLWPRVGAGRPSLDAAQVVVGGQLAEH-----------------GVGLGV 293
           E  I+   + +L P V AG P L    V   GQL++                  GVGL  
Sbjct: 17  EQLIKTGGKEKLLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAA 76

Query: 292 LERGLCVGLELVDDPAHVR 236
            + GL + L +V+D  HVR
Sbjct: 77  TQIGLGLALAVVED--HVR 93

>ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (Lymphoid blast|
           crisis-like 2) (Lbc's second cousin)
          Length = 920

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 319 AEHGVGLGVLERGLCVGLELVDDPAHVRLPVHTDAVDVERPEAREPRLEG 170
           A+   GLG+  R   VG    D+P     P+ TD+VD   P    P+  G
Sbjct: 297 ADRKGGLGMSSRDRTVGTPGQDNPGVSLHPLSTDSVDSREPGVDTPQEPG 346

>COABC_VIBCH (Q9KVD1) Coenzyme A biosynthesis bifunctional protein coaBC|
           (DNA/pantothenate metabolism flavoprotein) [Includes:
           Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)
           (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC
           6.3.2.5) (Phosp
          Length = 399

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -2

Query: 373 GAGRPSLDAAQVVVGGQLAEHGVGLGVLERGLCVGLELVDDPAHVRLPVHTDAVDVE 203
           G  R +LD  + +      + G  L      L   + LV  P H+  PV  + +DV+
Sbjct: 196 GPTREALDPVRYITNHSSGKMGFALAKAAAQLGADVTLVSGPVHLPTPVGVNRIDVQ 252

>POLG_EMCV (P03304) Genome polyprotein [Contains: Coat protein VP4 (Rho); Coat|
            protein VP2 (Beta); Coat protein VP3 (Gamma); Coat
            protein VP1 (Alpha); Picornain 2A (EC 3.4.22.29) (Core
            protein P2A) (G); Core protein P2B (I); Core protein P2C
            (C); Core pro
          Length = 2290

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 113  SPTALMMKFPVKSTLPSVASLKARFARFGPL 205
            +P      FP+ STL  V  LK +F + GPL
Sbjct: 2190 TPANTTSTFPLNSTLEDVVFLKRKFKKEGPL 2220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.139    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,730,812
Number of Sequences: 219361
Number of extensions: 639210
Number of successful extensions: 1886
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)