ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome... 268 1e-68
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 268 1e-68
3gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 260 3e-66
4gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 48 0.024
5gb|AE009455.1| Brucella melitensis 16M chromosome I, section 12 ... 48 0.024
6gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 48 0.024
7emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 48 0.024
8gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.38
9emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.38
10gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.38
11gb|CP000081.1| Leishmania major chromosome 35, complete sequence 42 1.5
12ref|XM_424920.1| PREDICTED: Gallus gallus similar to Topoisomera... 42 1.5
13gb|AF424442.1| Uncultured candidate division OP11 bacterium MERT... 42 1.5
14gb|DQ158162.1| Uncultured cyanobacterium clone LK20mP-31 PsbA (p... 42 1.5
15gb|DQ158159.1| Uncultured cyanobacterium clone LK20mP-12 PsbA (p... 42 1.5
16gb|DQ158156.1| Uncultured cyanobacterium clone LK1mP-55 PsbA (ps... 42 1.5
17gb|DQ158155.1| Uncultured cyanobacterium clone LK1mP-53 PsbA (ps... 42 1.5
18gb|DQ158154.1| Uncultured cyanobacterium clone LK1mP-51 PsbA (ps... 42 1.5
19gb|DQ158153.1| Uncultured cyanobacterium clone LK1mP-48 PsbA (ps... 42 1.5
20gb|DQ158151.1| Uncultured cyanobacterium clone LK1mP-34 PsbA (ps... 42 1.5
21gb|DQ158148.1| Uncultured cyanobacterium clone LK1mP-24 PsbA (ps... 42 1.5
22gb|DQ158147.1| Uncultured cyanobacterium clone LK1mP-6 PsbA (psb... 42 1.5
23ref|XM_838470.1| Leishmania major strain Friedlin hypothetical p... 42 1.5
24emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), ... 42 1.5
25dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 1.5
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
28dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
29dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
30dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
31dbj|AK072932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
32gb|AF156980.1|AF156980 Synechococcus WH7803 photosystem II D1 pr... 42 1.5
33gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 1.5
34gb|M11557.1|ANIPSBA Anacystis nidulans psbA gene encoding Q-B pr... 42 1.5
35ref|XM_462709.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
36ref|XM_473004.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
37gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
38gb|AC163623.5| Mus musculus BAC clone RP23-123D6 from chromosome... 40 5.9
39gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.9
40ref|XM_613126.2| PREDICTED: Bos taurus similar to melanoma-assoc... 40 5.9
41gb|AC183807.3| Pan troglodytes BAC clone CH251-65H22 from chromo... 40 5.9
42emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.9
43gb|AY184489.1| Tannerella forsythensis SusB (susB) gene, complet... 40 5.9
44gb|AC182586.3| Pan troglodytes BAC clone CH251-499F21 from chrom... 40 5.9
45emb|AL691447.18| Human DNA sequence from clone RP11-307E17 on ch... 40 5.9
46emb|AL445670.19| Human DNA sequence from clone RP11-520B13 on ch... 40 5.9
47emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
48emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
49gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, c... 40 5.9
50gb|AY963368.1| Uncultured bacterium clone AH75 16S ribosomal RNA... 40 5.9
51gb|AE011720.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.9
52gb|AE012329.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.9
53gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein gluco... 40 5.9
54ref|XM_934518.1| PREDICTED: Homo sapiens coiled-coil domain cont... 40 5.9
55dbj|AK046762.1| Mus musculus 4 days neonate thymus cDNA, RIKEN f... 40 5.9
56gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.9
57gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.9
58emb|BX465198.11| Zebrafish DNA sequence from clone DKEYP-84E12 i... 40 5.9
59dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
60gb|AC087741.18| Homo sapiens chromosome 17, clone RP11-334C17, c... 40 5.9
61dbj|AK102925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
62ref|NM_210669.2| Eremothecium gossypii AFL235Wp (AFL235W), mRNA 40 5.9
63dbj|AK061664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
64emb|AL512542.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.9
65gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.9
66emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
67emb|AL772369.6| Human DNA sequence from clone RP11-395L9 on chro... 40 5.9
68emb|AL772267.9| Human DNA sequence from clone RP13-37K15 on chro... 40 5.9
69dbj|AB001883.1| Oryza sativa (japonica cultivar-group) mRNA for ... 40 5.9 
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04,
             complete sequence
          Length = 88812

 Score =  268 bits (135), Expect = 1e-68
 Identities = 224/253 (88%), Gaps = 3/253 (1%)
 Strand = Plus / Plus

                                                                         
Query: 106   gacgccgtcgccgacggcgctgatgatgaagttccccgtgaagagcacgctgccgtcggt 165
             |||||| |||||||||||||||||||||||||||||   ||||| ||||||||| |||||
Sbjct: 34692 gacgccatcgccgacggcgctgatgatgaagttcccgccgaagaccacgctgccatcggt 34751

                                                                         
Query: 166   ggcctccctcaaggcgaggttcgcgcgcttcgggccgctcgacatcgacggcatccgtgt 225
             ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct: 34752 ggcctccctcaaggcgaggttcgcgcggttcgggccgctcgacgtcgacggcatccgcgt 34811

                                                                         
Query: 226   gtactggaagtcgcacatgtgccgggtcatctacaagttccagtccgacgcagaggccgc 285
              ||||||||||| ||||||||||| |||||||||| |||| |||||||||| || | |||
Sbjct: 34812 ctactggaagtcccacatgtgccgcgtcatctacaggttcaagtccgacgccgacgtcgc 34871

                                                                         
Query: 286   gctcaagtacgccaaggccaa---cgccatgttcggccagttggcccccaactactacct 342
             ||||||||||||    |||||   | |||||||||||||| | || ||||||||||||||
Sbjct: 34872 gctcaagtacgcgcgcgccaacaccaccatgttcggccaggtcgcgcccaactactacct 34931

                          
Query: 343   gcgcggcgtcgag 355
              ||||||||||||
Sbjct: 34932 ccgcggcgtcgag 34944
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  268 bits (135), Expect = 1e-68
 Identities = 224/253 (88%), Gaps = 3/253 (1%)
 Strand = Plus / Plus

                                                                           
Query: 106     gacgccgtcgccgacggcgctgatgatgaagttccccgtgaagagcacgctgccgtcggt 165
               |||||| |||||||||||||||||||||||||||||   ||||| ||||||||| |||||
Sbjct: 2756366 gacgccatcgccgacggcgctgatgatgaagttcccgccgaagaccacgctgccatcggt 2756425

                                                                           
Query: 166     ggcctccctcaaggcgaggttcgcgcgcttcgggccgctcgacatcgacggcatccgtgt 225
               ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct: 2756426 ggcctccctcaaggcgaggttcgcgcggttcgggccgctcgacgtcgacggcatccgcgt 2756485

                                                                           
Query: 226     gtactggaagtcgcacatgtgccgggtcatctacaagttccagtccgacgcagaggccgc 285
                ||||||||||| ||||||||||| |||||||||| |||| |||||||||| || | |||
Sbjct: 2756486 ctactggaagtcccacatgtgccgcgtcatctacaggttcaagtccgacgccgacgtcgc 2756545

                                                                           
Query: 286     gctcaagtacgccaaggccaa---cgccatgttcggccagttggcccccaactactacct 342
               ||||||||||||    |||||   | |||||||||||||| | || ||||||||||||||
Sbjct: 2756546 gctcaagtacgcgcgcgccaacaccaccatgttcggccaggtcgcgcccaactactacct 2756605

                            
Query: 343     gcgcggcgtcgag 355
                ||||||||||||
Sbjct: 2756606 ccgcggcgtcgag 2756618



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 106      gacgccgtcgccgacggcgc 125
                ||||||||||||||||||||
Sbjct: 26736756 gacgccgtcgccgacggcgc 26736737
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>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score =  260 bits (131), Expect = 3e-66
 Identities = 223/253 (88%), Gaps = 3/253 (1%)
 Strand = Plus / Minus

                                                                          
Query: 106    gacgccgtcgccgacggcgctgatgatgaagttccccgtgaagagcacgctgccgtcggt 165
              |||||| |||||||||||||||||||||||||||||   ||||| ||||||||| |||||
Sbjct: 111241 gacgccatcgccgacggcgctgatgatgaagttcccgccgaagaccacgctgccatcggt 111182

                                                                          
Query: 166    ggcctccctcaaggcgaggttcgcgcgcttcgggccgctcgacatcgacggcatccgtgt 225
              ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct: 111181 ggcctccctcaaggcgaggttcgcgcggttcgggccgctcgacgtcgacggcatccgcgt 111122

                                                                          
Query: 226    gtactggaagtcgcacatgtgccgggtcatctacaagttccagtccgacgcagaggccgc 285
               ||||||||||| ||||||||||| |||||||||| |||| |||||||||| || | |||
Sbjct: 111121 ctactggaagtcccacatgtgccgcgtcatctacaggttcaagtccgacgccgacgtcgc 111062

                                                                          
Query: 286    gctcaagtacgc---caaggccaacgccatgttcggccagttggcccccaactactacct 342
              ||||||||||||   ||    || | |||||||||||||| | || ||||||||||||||
Sbjct: 111061 gctcaagtacgcgcgcaccaacaccaccatgttcggccaggtcgcgcccaactactacct 111002

                           
Query: 343    gcgcggcgtcgag 355
               ||||||||||||
Sbjct: 111001 ccgcggcgtcgag 110989
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 45      tgaaggaaaaggctctggccgcag 68
               ||||||||||||||||||||||||
Sbjct: 1876061 tgaaggaaaaggctctggccgcag 1876084
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>gb|AE009455.1| Brucella melitensis 16M chromosome I, section 12 of 195 of the
            complete sequence
          Length = 10179

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 45   tgaaggaaaaggctctggccgcag 68
            ||||||||||||||||||||||||
Sbjct: 3280 tgaaggaaaaggctctggccgcag 3257
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 45      tgaaggaaaaggctctggccgcag 68
               ||||||||||||||||||||||||
Sbjct: 1893073 tgaaggaaaaggctctggccgcag 1893096
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 45      tgaaggaaaaggctctggccgcag 68
               ||||||||||||||||||||||||
Sbjct: 1890201 tgaaggaaaaggctctggccgcag 1890224
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 194     ttcgggccgctcgacatcgacg 215
               ||||||||||||||||||||||
Sbjct: 2078452 ttcgggccgctcgacatcgacg 2078473
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 194    ttcgggccgctcgacatcgacg 215
              ||||||||||||||||||||||
Sbjct: 240005 ttcgggccgctcgacatcgacg 240026
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 194     ttcgggccgctcgacatcgacg 215
               ||||||||||||||||||||||
Sbjct: 2084957 ttcgggccgctcgacatcgacg 2084936
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 107     acgccgtcgccgacggcgctg 127
               |||||||||||||||||||||
Sbjct: 1824612 acgccgtcgccgacggcgctg 1824592
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>ref|XM_424920.1| PREDICTED: Gallus gallus similar to Topoisomerase I binding,
           arginine/serine-rich (LOC427342), mRNA
          Length = 3347

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   cgcgggaggcagcacggcggc 21
           |||||||||||||||||||||
Sbjct: 699 cgcgggaggcagcacggcggc 679
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>gb|AF424442.1| Uncultured candidate division OP11 bacterium MERTZ_2CM_242 16S
           ribosomal RNA gene, partial sequence
          Length = 989

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 398 ccgcagcgctctgatctgcgg 418
           |||||||||||||||||||||
Sbjct: 859 ccgcagcgctctgatctgcgg 839
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>gb|DQ158162.1| Uncultured cyanobacterium clone LK20mP-31 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158159.1| Uncultured cyanobacterium clone LK20mP-12 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158156.1| Uncultured cyanobacterium clone LK1mP-55 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158155.1| Uncultured cyanobacterium clone LK1mP-53 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158154.1| Uncultured cyanobacterium clone LK1mP-51 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158153.1| Uncultured cyanobacterium clone LK1mP-48 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158151.1| Uncultured cyanobacterium clone LK1mP-34 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158148.1| Uncultured cyanobacterium clone LK1mP-24 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>gb|DQ158147.1| Uncultured cyanobacterium clone LK1mP-6 PsbA (psbA) gene, partial
           cds
          Length = 928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 91  tcgacatcgacggcatccgtg 111
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>ref|XM_838470.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1388)
           partial mRNA
          Length = 423

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 acgccgtcgccgacggcgctg 127
           |||||||||||||||||||||
Sbjct: 62  acgccgtcgccgacggcgctg 42
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>emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), secG, bcsA, psbK, tgt, sys,
             end3, pur6, dpdX, dxs, leu1, sek0003, sek0005, sek0006,
             sek0007, sek0008, sek0009, sek0010, sek0011, sek0012,
             sel0013,  sek0016, sel0017, sek0018, sel0019, sek0020,
             sek0022, sek0024, sek0025, sek0026, sek0027, sel0028,
             sek0030, sek0031, sel0032, sel0033, sel0034, sel0035,
             sel0036, sel0037, sel0039, sek0041, sek0043, sek0044,
             sek0045, psba-I gene, sek0047 and sel0048 (partial) genes
          Length = 42558

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   tcgacatcgacggcatccgtg 224
             |||||||||||||||||||||
Sbjct: 41110 tcgacatcgacggcatccgtg 41090
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 204     tcgacatcgacggcatccgtg 224
               |||||||||||||||||||||
Sbjct: 1206835 tcgacatcgacggcatccgtg 1206815
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 145      gaagagcacgctgccgtcggtggcc 169
                ||||||||||||||||||| |||||
Sbjct: 20701434 gaagagcacgctgccgtcgttggcc 20701458
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 290      aagtacgccaaggccaacgcc 310
                |||||||||||||||||||||
Sbjct: 25075927 aagtacgccaaggccaacgcc 25075907
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>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0006C01
          Length = 153865

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 290    aagtacgccaaggccaacgcc 310
              |||||||||||||||||||||
Sbjct: 148450 aagtacgccaaggccaacgcc 148430
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>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0688A04
          Length = 143969

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 290   aagtacgccaaggccaacgcc 310
             |||||||||||||||||||||
Sbjct: 75535 aagtacgccaaggccaacgcc 75515
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>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0427B07
          Length = 172058

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 145    gaagagcacgctgccgtcggtggcc 169
              ||||||||||||||||||| |||||
Sbjct: 123841 gaagagcacgctgccgtcgttggcc 123865
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>dbj|AK072932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144J15, full
           insert sequence
          Length = 842

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 145 gaagagcacgctgccgtcggtggcc 169
           ||||||||||||||||||| |||||
Sbjct: 403 gaagagcacgctgccgtcgttggcc 379
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>gb|AF156980.1|AF156980 Synechococcus WH7803 photosystem II D1 protein (psbA) gene,
           complete cds
          Length = 1409

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 383 tcgacatcgacggcatccgtg 403
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 204    tcgacatcgacggcatccgtg 224
              |||||||||||||||||||||
Sbjct: 414045 tcgacatcgacggcatccgtg 414065
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>gb|M11557.1|ANIPSBA Anacystis nidulans psbA gene encoding Q-B protein of photosystem
           II, complete cds
          Length = 1083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tcgacatcgacggcatccgtg 224
           |||||||||||||||||||||
Sbjct: 173 tcgacatcgacggcatccgtg 193
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>ref|XM_462709.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 256 ctacaagttccagtccgacg 275
           ||||||||||||||||||||
Sbjct: 225 ctacaagttccagtccgacg 244
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>ref|XM_473004.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 774

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   gggaggcagcacggcggcgg 23
           ||||||||||||||||||||
Sbjct: 612 gggaggcagcacggcggcgg 631
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>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
             complete sequence
          Length = 122120

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gacgccgtcgccgacggcgc 125
             ||||||||||||||||||||
Sbjct: 18695 gacgccgtcgccgacggcgc 18676
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>gb|AC163623.5| Mus musculus BAC clone RP23-123D6 from chromosome 9, complete sequence
          Length = 193784

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gggtcatctacaagttccag 268
             ||||||||||||||||||||
Sbjct: 71966 gggtcatctacaagttccag 71947
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     gcagcgctctgatctgcggc 419
               ||||||||||||||||||||
Sbjct: 2340484 gcagcgctctgatctgcggc 2340465



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    gcagcgctctgatctgcggc 419
              ||||||||||||||||||||
Sbjct: 561114 gcagcgctctgatctgcggc 561133



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    gcagcgctctgatctgcggc 419
              ||||||||||||||||||||
Sbjct: 398951 gcagcgctctgatctgcggc 398970



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    gcagcgctctgatctgcggc 419
              ||||||||||||||||||||
Sbjct: 229210 gcagcgctctgatctgcggc 229229
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>ref|XM_613126.2| PREDICTED: Bos taurus similar to melanoma-associated chondroitin
            sulfate proteoglycan 4 (LOC533653), mRNA
          Length = 7972

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   cggcggctcagctgccacgg 37
            ||||||||||||||||||||
Sbjct: 4002 cggcggctcagctgccacgg 3983
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>gb|AC183807.3| Pan troglodytes BAC clone CH251-65H22 from chromosome 9, complete
              sequence
          Length = 171193

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     catgaaggaaaaggctctgg 62
              ||||||||||||||||||||
Sbjct: 152122 catgaaggaaaaggctctgg 152141
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 283     cgcgctcaagtacgccaagg 302
               ||||||||||||||||||||
Sbjct: 1048535 cgcgctcaagtacgccaagg 1048516
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>gb|AY184489.1| Tannerella forsythensis SusB (susB) gene, complete cds; and SusC
            (susC) gene, partial cds
          Length = 4124

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gacggcgctgatgatgaagt 137
            ||||||||||||||||||||
Sbjct: 1036 gacggcgctgatgatgaagt 1055
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>gb|AC182586.3| Pan troglodytes BAC clone CH251-499F21 from chromosome 9, complete
              sequence
          Length = 208237

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     catgaaggaaaaggctctgg 62
              ||||||||||||||||||||
Sbjct: 111490 catgaaggaaaaggctctgg 111509
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>emb|AL691447.18| Human DNA sequence from clone RP11-307E17 on chromosome 9 Contains the
              gene for zinc finger protein 169, a voltage-dependent anion
              channel 1  (VDAC1) pseudogene, a novel gene
              (DKFZp434I1117), a novel pseudogene, a novel gene, the 5'
              end of a gene for a novel protein similar to mouse
              hippocampus abundant gene transcript 1(HIAT1) and three CpG
              islands, complete sequence
          Length = 171255

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     catgaaggaaaaggctctgg 62
              ||||||||||||||||||||
Sbjct: 117875 catgaaggaaaaggctctgg 117856
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>emb|AL445670.19| Human DNA sequence from clone RP11-520B13 on chromosome 9 Contains the
             5' end of a novel gene (MGC12954), the CTSL2 gene for
             cathepsin L2 (CTSU, CTSV, CATL2), a pseudogene similar to
             part of growth arrest-specific 2 like 1 (GAS2L1), a
             transcription elongation factor A (SII), 1 (TFS2, GTFS2)
             (TCEA1) pseudogene, a novel gene, a vomeronasal 1
             pseudogene, a noval pseudogene and four CpG islands,
             complete sequence
          Length = 168026

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    catgaaggaaaaggctctgg 62
             ||||||||||||||||||||
Sbjct: 36549 catgaaggaaaaggctctgg 36568
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>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16,
             complete sequence
          Length = 157801

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ctacaagttccagtccgacg 275
             ||||||||||||||||||||
Sbjct: 80648 ctacaagttccagtccgacg 80667
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>emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30,
             complete sequence
          Length = 88547

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gggaggcagcacggcggcgg 23
             ||||||||||||||||||||
Sbjct: 78759 gggaggcagcacggcggcgg 78740
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>gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, complete sequence
          Length = 209109

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     cggctcagctgccacgggcc 40
              ||||||||||||||||||||
Sbjct: 204962 cggctcagctgccacgggcc 204981
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>gb|AY963368.1| Uncultured bacterium clone AH75 16S ribosomal RNA gene, partial
            sequence
          Length = 1424

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  ccgcagcgctctgatctgcg 417
            ||||||||||||||||||||
Sbjct: 1304 ccgcagcgctctgatctgcg 1285
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>gb|AE011720.1| Xanthomonas axonopodis pv. citri str. 306,  section 98 of 469 of the
            complete genome
          Length = 10983

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  cgcgctcaagtacgccaagg 302
            ||||||||||||||||||||
Sbjct: 1887 cgcgctcaagtacgccaagg 1868
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>gb|AE012329.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 237
            of 460 of the complete genome
          Length = 11212

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 106  gacgccgtcgccgacggcgctgatgatg 133
            ||||||| || |||||||||||||||||
Sbjct: 4090 gacgccgacgacgacggcgctgatgatg 4117
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>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene,
            complete sequence; and unknown genes
          Length = 7718

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 338  tacctgcgcggcgtcgaggg 357
            ||||||||||||||||||||
Sbjct: 3552 tacctgcgcggcgtcgaggg 3533
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>ref|XM_934518.1| PREDICTED: Homo sapiens coiled-coil domain containing 40, transcript
            variant 8 (CCDC40), mRNA
          Length = 1978

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   cggctcagctgccacgggcc 40
            ||||||||||||||||||||
Sbjct: 1748 cggctcagctgccacgggcc 1767
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>dbj|AK046762.1| Mus musculus 4 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:B630016F04 product:protein kinase C
           substrate 80K-H, full insert sequence
          Length = 2092

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gggtcatctacaagttccag 268
           ||||||||||||||||||||
Sbjct: 257 gggtcatctacaagttccag 238
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
            complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  cgctgatgatgaagttcccc 142
            ||||||||||||||||||||
Sbjct: 1070 cgctgatgatgaagttcccc 1051
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 106     gacgccgtcgccgacggcgctgatgatg 133
               ||||||| || |||||||||||||||||
Sbjct: 2301299 gacgccgacgacgacggcgctgatgatg 2301272
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>emb|BX465198.11| Zebrafish DNA sequence from clone DKEYP-84E12 in linkage group 12,
             complete sequence
          Length = 194152

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gacggcgctgatgatgaagt 137
             ||||||||||||||||||||
Sbjct: 34720 gacggcgctgatgatgaagt 34701
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 4        gggaggcagcacggcggcgg 23
                ||||||||||||||||||||
Sbjct: 24623614 gggaggcagcacggcggcgg 24623595



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 256      ctacaagttccagtccgacg 275
                ||||||||||||||||||||
Sbjct: 11912053 ctacaagttccagtccgacg 11912072
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>gb|AC087741.18| Homo sapiens chromosome 17, clone RP11-334C17, complete sequence
          Length = 182016

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     cggctcagctgccacgggcc 40
              ||||||||||||||||||||
Sbjct: 143132 cggctcagctgccacgggcc 143113
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>dbj|AK102925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114D17, full
           insert sequence
          Length = 1474

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gacgccgtcgccgacggcgc 125
           ||||||||||||||||||||
Sbjct: 170 gacgccgtcgccgacggcgc 151
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>ref|NM_210669.2| Eremothecium gossypii AFL235Wp (AFL235W), mRNA
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  cgctgatgatgaagttcccc 142
            ||||||||||||||||||||
Sbjct: 1069 cgctgatgatgaagttcccc 1050
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>dbj|AK061664.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E12, full
           insert sequence
          Length = 765

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   gggaggcagcacggcggcgg 23
           ||||||||||||||||||||
Sbjct: 393 gggaggcagcacggcggcgg 412
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>emb|AL512542.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0522A01, complete
             sequence
          Length = 97077

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gggaggcagcacggcggcgg 23
             ||||||||||||||||||||
Sbjct: 62405 gggaggcagcacggcggcgg 62386
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     gaggacgccgtcgccgacgg 122
               ||||||||||||||||||||
Sbjct: 2148453 gaggacgccgtcgccgacgg 2148472



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 22      ggctcagctgccacgggccg 41
               ||||||||||||||||||||
Sbjct: 1680966 ggctcagctgccacgggccg 1680985
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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
             complete sequence
          Length = 133856

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gggaggcagcacggcggcgg 23
             ||||||||||||||||||||
Sbjct: 13137 gggaggcagcacggcggcgg 13118
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>emb|AL772369.6| Human DNA sequence from clone RP11-395L9 on chromosome 9, complete
             sequence
          Length = 71591

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    catgaaggaaaaggctctgg 62
             ||||||||||||||||||||
Sbjct: 28110 catgaaggaaaaggctctgg 28091
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>emb|AL772267.9| Human DNA sequence from clone RP13-37K15 on chromosome 9, complete
             sequence
          Length = 115952

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    catgaaggaaaaggctctgg 62
             ||||||||||||||||||||
Sbjct: 74463 catgaaggaaaaggctctgg 74444
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>dbj|AB001883.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger
           protein, complete cds, clone:E10707
          Length = 987

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   gggaggcagcacggcggcgg 23
           ||||||||||||||||||||
Sbjct: 634 gggaggcagcacggcggcgg 653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,053,069
Number of Sequences: 3902068
Number of extensions: 3053069
Number of successful extensions: 59256
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57876
Number of HSP's gapped (non-prelim): 1380
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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