| Clone Name | bast40d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192814.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1776 Score = 157 bits (79), Expect = 4e-35 Identities = 127/143 (88%) Strand = Plus / Plus Query: 287 ggaggcgtggatggatcgtacctcagcgacacacggtttgatcaatgcgctgtttctcca 346 |||||||||||||| |||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 346 ggaggcgtggatggctcgtacctcagcgacacaaggtttgatcaatgcactatttctccg 405 Query: 347 ttgtcactgcaaggaatcaaagatgctgggtatgaaaggctgacccgcgtccaggaggct 406 ||||||||| ||| ||||||||||||||||||||||| |||||| || |||||||| Sbjct: 406 ttgtcactgaaagccgtcaaagatgctgggtatgaaaggatgacccaggtgcaggaggca 465 Query: 407 actctgccggtaattcttcaagg 429 |||||||| ||||| |||||||| Sbjct: 466 actctgccagtaatccttcaagg 488
>dbj|AK067570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110L15, full insert sequence Length = 2325 Score = 157 bits (79), Expect = 4e-35 Identities = 127/143 (88%) Strand = Plus / Plus Query: 287 ggaggcgtggatggatcgtacctcagcgacacacggtttgatcaatgcgctgtttctcca 346 |||||||||||||| |||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 413 ggaggcgtggatggctcgtacctcagcgacacaaggtttgatcaatgcactatttctccg 472 Query: 347 ttgtcactgcaaggaatcaaagatgctgggtatgaaaggctgacccgcgtccaggaggct 406 ||||||||| ||| ||||||||||||||||||||||| |||||| || |||||||| Sbjct: 473 ttgtcactgaaagccgtcaaagatgctgggtatgaaaggatgacccaggtgcaggaggca 532 Query: 407 actctgccggtaattcttcaagg 429 |||||||| ||||| |||||||| Sbjct: 533 actctgccagtaatccttcaagg 555
>ref|NM_192815.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 287 ggaggcgtggatggatcgtacctcagcgacacacggtttgatcaatgcgctgtttctcca 346 |||||||||| ||| ||| | |||||||| ||||| ||||||||||| |||||||||| Sbjct: 190 ggaggcgtggttggctcgcatctcagcgagacacgatttgatcaatgtcctgtttctccg 249 Query: 347 ttgtcactgcaaggaatcaaagatgctgggtatgaaaggctgacccgcgtccaggaggct 406 |||||| || ||| ||||||||||||||| ||||||| | |||||| || |||||||| Sbjct: 250 ttgtcattgaaagcaatcaaagatgctggatatgaaaagatgacccaggtgcaggaggca 309 Query: 407 actctgccggtaattcttcaagg 429 |||||||| |||| |||||||| Sbjct: 310 actctgccaataatccttcaagg 332
>dbj|AK067476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107O15, full insert sequence Length = 2054 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Plus Query: 287 ggaggcgtggatggatcgtacctcagcgacacacggtttgatcaatgcgctgtttctcca 346 |||||||||| ||| ||| | |||||||| ||||| ||||||||||| |||||||||| Sbjct: 279 ggaggcgtggttggctcgcatctcagcgagacacgatttgatcaatgtcctgtttctccg 338 Query: 347 ttgtcactgcaaggaatcaaagatgctgggtatgaaaggctgacccgcgtccaggaggct 406 |||||| || ||| ||||||||||||||| ||||||| | |||||| || |||||||| Sbjct: 339 ttgtcattgaaagcaatcaaagatgctggatatgaaaagatgacccaggtgcaggaggca 398 Query: 407 actctgccggtaattcttcaagg 429 |||||||| |||| |||||||| Sbjct: 399 actctgccaataatccttcaagg 421
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Plus Query: 321 ggtttgatcaatgcgctgtttctccattgtcactgcaaggaatcaaagatgctgggtatg 380 |||||||||||||| || ||||||| ||||||||| ||| |||||||||||||||||| Sbjct: 24595206 ggtttgatcaatgcactatttctccgttgtcactgaaagccgtcaaagatgctgggtatg 24595265 Query: 381 aaaggctgacccgcgtccaggaggctactctgccggtaattcttcaagg 429 ||||| |||||| || |||||||| |||||||| ||||| |||||||| Sbjct: 24595266 aaaggatgacccaggtgcaggaggcaactctgccagtaatccttcaagg 24595314 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 323 tttgatcaatgcgctgtttctccattgtcactgcaaggaatcaaagatgctgggtatgaa 382 ||||||||||| |||||||||| |||||| || ||| ||||||||||||||| |||||| Sbjct: 24599114 tttgatcaatgtcctgtttctccgttgtcattgaaagcaatcaaagatgctggatatgaa 24599173 Query: 383 aggctgacccgcgtccaggaggctactctgccggtaattcttcaagg 429 | | |||||| || |||||||| |||||||| |||| |||||||| Sbjct: 24599174 aagatgacccaggtgcaggaggcaactctgccaataatccttcaagg 24599220 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 287 ggaggcgtggatggatcgtacctcagcgacaca 319 |||||||||||||| |||||||||||||||||| Sbjct: 24594703 ggaggcgtggatggctcgtacctcagcgacaca 24594735
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Plus Query: 321 ggtttgatcaatgcgctgtttctccattgtcactgcaaggaatcaaagatgctgggtatg 380 |||||||||||||| || ||||||| ||||||||| ||| |||||||||||||||||| Sbjct: 21169 ggtttgatcaatgcactatttctccgttgtcactgaaagccgtcaaagatgctgggtatg 21228 Query: 381 aaaggctgacccgcgtccaggaggctactctgccggtaattcttcaagg 429 ||||| |||||| || |||||||| |||||||| ||||| |||||||| Sbjct: 21229 aaaggatgacccaggtgcaggaggcaactctgccagtaatccttcaagg 21277 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 323 tttgatcaatgcgctgtttctccattgtcactgcaaggaatcaaagatgctgggtatgaa 382 ||||||||||| |||||||||| |||||| || ||| ||||||||||||||| |||||| Sbjct: 25077 tttgatcaatgtcctgtttctccgttgtcattgaaagcaatcaaagatgctggatatgaa 25136 Query: 383 aggctgacccgcgtccaggaggctactctgccggtaattcttcaagg 429 | | |||||| || |||||||| |||||||| |||| |||||||| Sbjct: 25137 aagatgacccaggtgcaggaggcaactctgccaataatccttcaagg 25183 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 287 ggaggcgtggatggatcgtacctcagcgacaca 319 |||||||||||||| |||||||||||||||||| Sbjct: 20666 ggaggcgtggatggctcgtacctcagcgacaca 20698
>ref|XM_541527.2| PREDICTED: Canis familiaris hypothetical LOC484412 (LOC484412), mRNA Length = 2580 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Plus Query: 122 ccgaagcggcagcggaggcggcgcccgaggg 152 |||| ||||||| |||||||||||||||||| Sbjct: 1295 ccgatgcggcaggggaggcggcgcccgaggg 1325
>ref|XM_516447.1| PREDICTED: Pan troglodytes similar to Ariadne-2 protein homolog (ARI-2) (Triad1 protein) (HT005) (LOC460355), mRNA Length = 1039 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 48 cgaagcggcagcggaggcggcg 27
>gb|BC000422.2| Homo sapiens ariadne homolog 2 (Drosophila), mRNA (cDNA clone MGC:8671 IMAGE:2964505), complete cds Length = 2136 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 61 cgaagcggcagcggaggcggcg 40
>ref|NM_006321.2| Homo sapiens ariadne homolog 2 (Drosophila) (ARIH2), mRNA Length = 4081 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 73 cgaagcggcagcggaggcggcg 52
>gb|AC134028.10| Homo sapiens 3 BAC RP11-316M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 106034 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 71419 cgaagcggcagcggaggcggcg 71398
>dbj|AK097724.1| Homo sapiens cDNA FLJ40405 fis, clone TESTI2037382 Length = 1598 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 466 cgaagcggcagcggaggcggcg 487
>ref|XM_941288.1| PREDICTED: Homo sapiens hypothetical protein LOC651992 (LOC651992), mRNA Length = 1608 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 482 cgaagcggcagcggaggcggcg 503
>ref|XM_929378.1| PREDICTED: Homo sapiens hypothetical protein LOC646450 (LOC646450), mRNA Length = 1608 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 482 cgaagcggcagcggaggcggcg 503
>dbj|AK223550.1| Homo sapiens mRNA for ariadne homolog 2 variant, clone: FCC126E11 Length = 2286 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 cgaagcggcagcggaggcggcg 144 |||||||||||||||||||||| Sbjct: 85 cgaagcggcagcggaggcggcg 64
>ref|XM_480795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gcggcagcggaggcggcgcc 146 |||||||||||||||||||| Sbjct: 64 gcggcagcggaggcggcgcc 45
>gb|AC147104.2| Mus musculus BAC clone RP23-466J20 from chromosome 14, complete sequence Length = 168370 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cactgcaaggaatcaaagat 370 |||||||||||||||||||| Sbjct: 75132 cactgcaaggaatcaaagat 75113
>ref|XM_754030.1| Ustilago maydis 521 hypothetical protein (UM02976.1) partial mRNA Length = 4167 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 atatcgacatcgccggcgtt 79 |||||||||||||||||||| Sbjct: 2882 atatcgacatcgccggcgtt 2901
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggcagcggaggcggcgcccg 148 |||||||||||||||||||| Sbjct: 58346 ggcagcggaggcggcgcccg 58365
>ref|XM_535308.2| PREDICTED: Canis familiaris similar to CG10286-PA (LOC478132), mRNA Length = 2437 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccgaagcggcagcggaggcg 141 |||||||||||||||||||| Sbjct: 190 ccgaagcggcagcggaggcg 209
>gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome 12, complete sequence Length = 208026 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 acaggaggcgtggatggatcgtac 307 ||||||||||||||||||| |||| Sbjct: 197392 acaggaggcgtggatggatagtac 197369
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggcagcggaggcggcgcccg 148 |||||||||||||||||||| Sbjct: 11604411 ggcagcggaggcggcgcccg 11604430
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gcggcagcggaggcggcgcc 146 |||||||||||||||||||| Sbjct: 7777436 gcggcagcggaggcggcgcc 7777455
>ref|XM_214574.3| PREDICTED: Rattus norvegicus similar to hypothetical protein PRO1580 (predicted) (LOC291661), mRNA Length = 1209 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 agtgccagcggaggccatgg 251 |||||||||||||||||||| Sbjct: 993 agtgccagcggaggccatgg 1012
>dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0090H20 Length = 132628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gcggcagcggaggcggcgcc 146 |||||||||||||||||||| Sbjct: 8723 gcggcagcggaggcggcgcc 8742
>dbj|AP004183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1221_H04 Length = 129387 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gcggcagcggaggcggcgcc 146 |||||||||||||||||||| Sbjct: 118159 gcggcagcggaggcggcgcc 118178
>emb|X56107.1|SEERYA S. erythraea eryA gene for 6-deoxyerythronolide B synthase Length = 9769 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gcggaggcggcgcccgagggacgc 156 |||||||||||| ||||||||||| Sbjct: 3642 gcggaggcggcggccgagggacgc 3665
>emb|X62569.1|SEERYABS S.erythraea eryA gene for 6-deoxyerythronolyde B synthase II & III Length = 20444 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gcggaggcggcgcccgagggacgc 156 |||||||||||| ||||||||||| Sbjct: 14317 gcggaggcggcggccgagggacgc 14340
>dbj|AP006179.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB848B6, complete sequence Length = 64773 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aattcttcaaggcaagatgt 437 |||||||||||||||||||| Sbjct: 30640 aattcttcaaggcaagatgt 30621
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggcagcggaggcggcgcccg 148 |||||||||||||||||||| Sbjct: 11610851 ggcagcggaggcggcgcccg 11610870
>emb|CT030246.7| Mouse DNA sequence from clone RP24-400A10 on chromosome 12, complete sequence Length = 158577 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 acaggaggcgtggatggatcgtac 307 ||||||||||||||||||| |||| Sbjct: 90769 acaggaggcgtggatggatagtac 90792
>emb|AL359396.5|CNS05TEU Human chromosome 14 DNA sequence BAC R-314P15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163795 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 acaggaggcgtggatggatcgtac 307 ||||||||||||||||||| |||| Sbjct: 13329 acaggaggcgtggatggatagtac 13306 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,244,349 Number of Sequences: 3902068 Number of extensions: 2244349 Number of successful extensions: 42127 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41991 Number of HSP's gapped (non-prelim): 136 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)