ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40d05 |
|---|---|
| Clone Library Name | barley_pub |
>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding| protein homolog 2) Length = 448 Score = 148 bits (374), Expect = 6e-36 Identities = 79/109 (72%), Positives = 84/109 (77%) Frame = +2 Query: 137 DRKPGDGAAGDEKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXX 316 DRKPG GD+KD+KFEP AAPSRVGRKQRKQ+GPEAAARLP VAP Sbjct: 18 DRKPGGD--GDKKDRKFEPSAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLER 75 Query: 317 XXXXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 MEEEFVA+QERLRP+EDKTEEDRSKVDDLRGTPMSVGSLEEII Sbjct: 76 VKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEII 124
>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)| Length = 439 Score = 109 bits (272), Expect = 4e-24 Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 5/108 (4%) Frame = +2 Query: 155 GAAGDEKD-----KKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXX 319 G AG++KD KK+EPP P+RVG+K+R+ +GP+AA +LP V P Sbjct: 9 GGAGEKKDDKDKKKKYEPPI-PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERI 67 Query: 320 XXXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 ME+EF+ +QERL+P ++K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 68 KDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEII 115
>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 108 bits (271), Expect = 5e-24 Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 1/107 (0%) Frame = +2 Query: 146 PGDGAAGD-EKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXX 322 PG G D +K KK+EPP P+RVG+K++K +GP+AA++LP V P Sbjct: 11 PGGGKKDDKDKKKKYEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIK 69 Query: 323 XXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 MEEEF+ +QE+++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 70 DYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 108 bits (271), Expect = 5e-24 Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 1/107 (0%) Frame = +2 Query: 146 PGDGAAGD-EKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXX 322 PG G D +K KK+EPP P+RVG+K++K +GP+AA++LP V P Sbjct: 11 PGGGKKDDKDKKKKYEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIK 69 Query: 323 XXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 MEEEF+ +QE+++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 70 DYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 108 bits (271), Expect = 5e-24 Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 1/107 (0%) Frame = +2 Query: 146 PGDGAAGD-EKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXX 322 PG G D +K KK+EPP P+RVG+K++K +GP+AA++LP V P Sbjct: 11 PGGGKKDDKDKKKKYEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIK 69 Query: 323 XXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 MEEEF+ +QE+++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 70 DYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S| subunit ATPase 1) Length = 440 Score = 106 bits (264), Expect = 3e-23 Identities = 55/107 (51%), Positives = 73/107 (68%), Gaps = 1/107 (0%) Frame = +2 Query: 146 PGDGAAGD-EKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXX 322 PG G D +K KK+EPP P+RVG+K++K +GP+AA++ P V P Sbjct: 11 PGGGKKDDKDKKKKYEPPV-PTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIK 69 Query: 323 XXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 MEEEF+ +QE+++P E+K EE+RSKVDDLRGTPMSVG+LEEII Sbjct: 70 DYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEII 116
>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4| Length = 443 Score = 102 bits (253), Expect = 6e-22 Identities = 52/109 (47%), Positives = 73/109 (66%) Frame = +2 Query: 137 DRKPGDGAAGDEKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXX 316 DR GDG ++K K+E P PSR+G+K++ +GP+AA++LP V P Sbjct: 14 DRGAGDGEKKEKK--KYEAPI-PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSER 70 Query: 317 XXXXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 ME+EF+ +QERL+P E++ EE+R+KVD+LRGTPM+VGSLEEII Sbjct: 71 IKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEII 119
>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)| Length = 448 Score = 101 bits (252), Expect = 8e-22 Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 7/112 (6%) Frame = +2 Query: 149 GDGAAGD-----EKDK-KFEPPAAPSRVGRKQRK-QRGPEAAARLPPVAPXXXXXXXXXX 307 GDGA GD +KDK K+EPP P+R GR+++K Q GP+A+A+LP V P Sbjct: 13 GDGANGDNKKDQKKDKPKYEPPV-PTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLK 71 Query: 308 XXXXXXXXXMEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 MEEE+V +QERL+P +++T+E+R++VD++RGTPMSVG+LEEII Sbjct: 72 MQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEII 123
>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding| homolog 5) Length = 437 Score = 74.3 bits (181), Expect = 1e-13 Identities = 39/100 (39%), Positives = 59/100 (59%) Frame = +2 Query: 164 GDEKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEE 343 G + K+EPP S+ GRK+RK GP A +LP + P +EE Sbjct: 16 GSNQKPKYEPPVQ-SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEE 73 Query: 344 EFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEII 463 EFV++ E L+P E K EE++ +++++RG P+S+G+LEEII Sbjct: 74 EFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEII 113
>RS6_AEDAE (Q9U761) 40S ribosomal protein S6| Length = 346 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/35 (51%), Positives = 24/35 (68%) Frame = +2 Query: 149 GDGAAGDEKDKKFEPPAAPSRVGRKQRKQRGPEAA 253 G AGD+K+KK E AAP+ V +K+ +R PEAA Sbjct: 297 GKKTAGDKKEKKVEKKAAPA-VAKKEAPKRKPEAA 330
>RS6_AEDAL (Q9U762) 40S ribosomal protein S6| Length = 349 Score = 33.1 bits (74), Expect = 0.36 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%) Frame = +2 Query: 137 DRKPGDGA----AGDEKDKKFEPPAAPSRVGRKQRKQRGPEAA 253 D+K D AGD+K+KK E AAP+ +K+ +R PEAA Sbjct: 292 DKKSADSGKKATAGDKKEKKVEKKAAPA-AAKKEAPKRKPEAA 333
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 25.4 bits (54), Expect(2) = 1.7 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Frame = +2 Query: 140 RKPGDGAAGDEKDKKFEPPAAPSRVGRK---QRKQRGPEAAARLPP 268 R+P G A D EPP GR+ + + GPE AR P Sbjct: 17 RRPAPGPAVDASGGSAEPPPPLQPPGRRDLDEVEAPGPEEPARAVP 62 Score = 23.9 bits (50), Expect(2) = 1.7 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = +1 Query: 274 SALQVPPPPSQAGPRQGLPSHG 339 S L PPPP A Q P HG Sbjct: 65 SGLPPPPPPLPAPADQTQPPHG 86
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 26.9 bits (58), Expect(2) = 2.3 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = +2 Query: 143 KPGDGAAGDEKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPP 268 +PG F P P+R GRK ++QR E A P Sbjct: 396 RPGGPGGRGGTQGAFGRPGGPARRGRKSKRQRRQEYEAMQAP 437 Score = 21.9 bits (45), Expect(2) = 2.3 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 79 GGDGAGFSGRHG 114 GG G GF+GR G Sbjct: 370 GGGGGGFAGRPG 381
>HXB4_HUMAN (P17483) Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)| Length = 251 Score = 26.6 bits (57), Expect(2) = 2.6 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +1 Query: 289 PPPPSQAGPRQGLPSHGGGVRREPG 363 PPPP PR P G + EPG Sbjct: 83 PPPPPGLSPRAPAPPPAGALLPEPG 107 Score = 22.3 bits (46), Expect(2) = 2.6 Identities = 9/25 (36%), Positives = 12/25 (48%) Frame = +2 Query: 137 DRKPGDGAAGDEKDKKFEPPAAPSR 211 D PG A G ++ F+P A R Sbjct: 32 DHSPGYYAGGQRRESSFQPEAGFGR 56
>XKR6_HUMAN (Q5GH73) XK-related protein 6| Length = 641 Score = 30.0 bits (66), Expect = 3.0 Identities = 18/43 (41%), Positives = 21/43 (48%) Frame = +2 Query: 140 RKPGDGAAGDEKDKKFEPPAAPSRVGRKQRKQRGPEAAARLPP 268 RKP AA D D+ +PPAAP R+ P AA PP Sbjct: 80 RKPRRSAAADGGDQPLQPPAAPG----AGRQPPTPSAARPEPP 118
>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2| Length = 954 Score = 24.6 bits (52), Expect(2) = 3.8 Identities = 14/36 (38%), Positives = 15/36 (41%) Frame = +2 Query: 152 DGAAGDEKDKKFEPPAAPSRVGRKQRKQRGPEAAAR 259 D A GD K + PAAPS P A AR Sbjct: 53 DNAKGDSKPVQQRRPAAPSAPASTSSSAPTPAAPAR 88 Score = 23.5 bits (49), Expect(2) = 3.8 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Frame = +1 Query: 289 PPPPSQAGPRQGLPS---HGGGVRREPG 363 P P Q G R G+P+ HG RE G Sbjct: 105 PTPRPQGGARPGMPTPGRHGQNDNRENG 132
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +1 Query: 289 PPPPSQAGPRQGLPSHGGGVRREPGAAA 372 PPPP+ GPR G G PGA A Sbjct: 2076 PPPPADGGPRGAGDPGGAGASSGPGAPA 2103
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 289 PPPPSQAGPRQGLPSHGGGVRREP 360 PPPP GP +GL GG R P Sbjct: 97 PPPPRSRGPPRGLRGGSGGTRGPP 120
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 289 PPPPSQAGPRQGLPSHGGGVRREP 360 PPPP GP +GL GG R P Sbjct: 97 PPPPRSRGPPRGLRGGSGGTRGPP 120
>HXB4_MOUSE (P10284) Homeobox protein Hox-B4 (Hox-2.6)| Length = 250 Score = 24.3 bits (51), Expect(2) = 5.5 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = +1 Query: 289 PPPPSQAGPRQGLPSHGGGVRREPG 363 PPPP PR + G + EPG Sbjct: 82 PPPPPGLSPRAPVQPTAGALLPEPG 106 Score = 23.5 bits (49), Expect(2) = 5.5 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Frame = +2 Query: 137 DRKPGDGAAGDEKDKKFEPPA-----APSRVGRKQR-KQRGPEAAARLPPVAP 277 D PG A G ++ F+P A AP V R + GP PP P Sbjct: 32 DHSPGYYAGGQRRESGFQPEAAFGRRAPCTVQRYAACRDPGPPPPPPPPPPPP 84
>GCP60_RAT (Q7TNY6) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (DMT1-associated protein) (DAP) Length = 525 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +1 Query: 280 LQVPPPPSQAGPRQGLPSHGGGVRREPGAAA 372 LQ PP + PR GL S G +REPG AA Sbjct: 33 LQTPP---SSPPRDGLGSGTAGQQREPGEAA 60
>FRAT2_MOUSE (Q8K025) GSK-3-binding protein FRAT2 (Frat-2)| Length = 231 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 128 DRPACPCRPENPAPSPP 78 DRPA PC P P+PP Sbjct: 57 DRPASPCAAPGPPPAPP 73
>SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1434 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Frame = +2 Query: 143 KPGDGAAGDEKDKKFEPPAAPSRVGRKQ----RKQRGPEAAARLPP 268 +PG G G K EP APS G + Q P A ++PP Sbjct: 1236 QPGKGVEGRPSSGKPEPDEAPSVTGTVESPPPEAQEAPSLAPKVPP 1281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,339,585 Number of Sequences: 219361 Number of extensions: 608661 Number of successful extensions: 4535 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3826 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4506 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
