No.
Definition
Score (bits)
E Value
1 ref|XM_467100.1| Oryza sativa (japonica cultivar-group), mRNA
305
7e-80
2 dbj|AK101814.1| Oryza sativa (japonica cultivar-group) cDNA clon...
305
7e-80
3 emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro...
186
4e-44
4 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
178
1e-41
5 dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D...
178
1e-41
6 ref|XM_467099.1| Oryza sativa (japonica cultivar-group), mRNA
86
1e-13
7 dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D...
58
3e-05
8 gb|AY022793.1| Oryza sativa microsatellite MRG5118 containing (C...
48
0.025
9 emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genom...
48
0.025
10 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
48
0.025
11 dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D...
48
0.025
12 dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D...
48
0.025
13 dbj|AK120139.1| Oryza sativa (japonica cultivar-group) cDNA clon...
48
0.025
14 emb|X60766.1|SCPTSH S.carnosus ptsH gene for histidine-containin...
44
0.39
15 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
44
0.39
16 ref|XM_540214.2| PREDICTED: Canis familiaris similar to semaphor...
42
1.5
17 ref|XM_743568.1| Aspergillus fumigatus Af293 hypothetical protei...
42
1.5
18 gb|DQ093285.1| Rhodococcus aetherivorans putative enoyl-CoA hydr...
42
1.5
19 dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111
42
1.5
20 gb|CP000264.1| Jannaschia sp. CCS1, complete genome
42
1.5
21 dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp...
42
1.5
22 dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g...
42
1.5
23 gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete...
42
1.5
24 ref|XM_511521.1| PREDICTED: Pan troglodytes similar to Serine/th...
40
6.1
25 ref|NM_196880.1| Oryza sativa (japonica cultivar-group) putative...
40
6.1
26 ref|XM_476645.1| Oryza sativa (japonica cultivar-group), mRNA
40
6.1
27 gb|AY795970.1| Homo sapiens Fanconi anemia, complementation grou...
40
6.1
28 gb|AC136987.11| Mus musculus chromosome 16, clone RP24-129J16, c...
40
6.1
29 gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genom...
40
6.1
30 ref|XM_413937.1| PREDICTED: Gallus gallus similar to KIAA1561 pr...
40
6.1
31 ref|XM_362642.1| Magnaporthe grisea 70-15 predicted protein (MG0...
40
6.1
32 ref|XM_867416.1| PREDICTED: Bos taurus similar to WNK lysine def...
40
6.1
33 ref|NM_032387.3| Homo sapiens WNK lysine deficient protein kinas...
40
6.1
34 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
6.1
35 gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retro...
40
6.1
36 ref|XM_548082.2| PREDICTED: Canis familiaris similar to WNK lysi...
40
6.1
37 gb|AC073314.4| Homo sapiens BAC clone RP11-143I21 from 7, comple...
40
6.1
38 gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume ...
40
6.1
39 emb|AL353795.13| Human DNA sequence from clone RP11-182N22 on ch...
40
6.1
40 gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ...
40
6.1
41 emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
40
6.1
42 emb|AJ315730.1|SNO315730 Streptomyces noursei npsB gene for nour...
40
6.1
43 gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 gen...
40
6.1
44 gb|AF390018.1|AF390018 Homo sapiens putative protein kinase WNK4...
40
6.1
45 gb|AC004472.1|AC004472 Homo sapiens chromosome 9, P1 clone 11659...
40
6.1
46 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
47 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
48 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
49 gb|AC145857.3| Pan troglodytes BAC clone RP43-6D4 from chromosom...
40
6.1
50 gb|AC100793.8| Homo sapiens chromosome 17, clone CTD-3193K9, com...
40
6.1
51 gb|AC016889.28| Homo sapiens chromosome 17, clone RP11-506G7, co...
40
6.1
52 dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D...
40
6.1
53 dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g...
40
6.1
54 emb|AJ316534.1|HSA316534 Homo sapiens mRNA for serine/threonine ...
40
6.1
55 emb|AJ322758.1|HSA322758 Homo sapiens genomic sequence surroundi...
40
6.1
56 emb|AJ309861.1|HSA309861 Homo sapiens partial mRNA for putative ...
40
6.1
57 gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence
40
6.1
58 gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence
40
6.1
59 gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence
40
6.1
60 gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
40
6.1
61 gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co...
40
6.1
62 gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge...
40
6.1
63 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
40
6.1
64 gb|AE017221.1| Thermus thermophilus HB27, complete genome
40
6.1
65 gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, comple...
40
6.1
>emb|AJ307662.1 |OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
Length = 339972
Score = 186 bits (94), Expect = 4e-44
Identities = 157/178 (88%)
Strand = Plus / Plus
Query: 220 gactccgggatcgtggagctgaggctggagcggccggaggccaggaacgccatcgggaag 279
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 127312 gactcagggatcgtggagatgaggctggagcggccggaggccaggaacgccatcgggagg 127371
Query: 280 gagatgctcaaggggctgcggagcgccatggacaaggtgggggccgacccgacggccaac 339
||||||||| ||||| |||||||||| || || |||||| ||| ||| ||||||| |||
Sbjct: 127372 gagatgctccaggggttgcggagcgcgatcgagaaggtgaaggctgacgcgacggcgaac 127431
Query: 340 gtcgtgttggtcgcgagctccgtgcccaaggtcttctgcgcgggcgctgacctcaagg 397
|||||| || | ||||||||||| || ||||| |||||||| |||||||| |||||||
Sbjct: 127432 gtcgtgctgctggcgagctccgtcccgaaggttttctgcgctggcgctgatctcaagg 127489
Score = 89.7 bits (45), Expect = 7e-15
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 151 ctcttcgcccgggccctccagatcctctcccagccggaccccgtccgcctccacaagctc 210
|||||| |||| |||||||| |||||| |||||| ||| |||||||||||||| ||||||
Sbjct: 127145 ctcttctcccgcgccctccaaatcctcgcccagcaggagcccgtccgcctccagaagctc 127204
Query: 211 tcgccgcccgactccgg 227
||| |||||||||||||
Sbjct: 127205 tcggcgcccgactccgg 127221
Score = 71.9 bits (36), Expect = 2e-09
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 58 atgcgcagcctccggggcctcctcgccgtctccggccacctcgccgcccgccacgcgccg 117
||||||| |||||| || ||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 127064 atgcgcatcctccgtggaatcctcgccgtctccggccacctcgccggccgccgcgcgccg 127123
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 229 atcgtggagctgaggctggagcggccggaggccaggaacgccatc 273
||||| ||||||||||||||||| ||||||| || ||||||||||
Sbjct: 123499 atcgtagagctgaggctggagcgtccggaggtcaagaacgccatc 123543
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 395 aggaaaggaggttaatgggctctagtgaagttcgggaatttgttaattcc 444
||||||||||||||||| || || | |||||||| |||||||| ||||||
Sbjct: 128296 aggaaaggaggttaatgagcccttgcgaagttcgcgaatttgtcaattcc 128345
Score = 42.1 bits (21), Expect = 1.5
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 183 gccggaccccgtccgcctccacaagctctcgccgcccgact 223
|||||| |||||| | ||||||||||||||| | |||||||
Sbjct: 122595 gccggatcccgtcagtctccacaagctctcggcacccgact 122635
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 178 bits (90), Expect = 1e-41
Identities = 156/178 (87%)
Strand = Plus / Plus
Query: 220 gactccgggatcgtggagctgaggctggagcggccggaggccaggaacgccatcgggaag 279
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 26405297 gactcagggatcgtggagatgaggctggagcggccggaggccaggaacgccatcgggagg 26405356
Query: 280 gagatgctcaaggggctgcggagcgccatggacaaggtgggggccgacccgacggccaac 339
||||||||| ||||| |||||||||| || || |||||| ||| ||| ||||||| ||
Sbjct: 26405357 gagatgctccaggggttgcggagcgcgatcgagaaggtgaaggctgacgcgacggcgaaa 26405416
Query: 340 gtcgtgttggtcgcgagctccgtgcccaaggtcttctgcgcgggcgctgacctcaagg 397
|||||| || | ||||||||||| || ||||| |||||||| |||||||| |||||||
Sbjct: 26405417 gtcgtgctgctggcgagctccgtcccgaaggttttctgcgctggcgctgatctcaagg 26405474
Score = 89.7 bits (45), Expect = 7e-15
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 151 ctcttcgcccgggccctccagatcctctcccagccggaccccgtccgcctccacaagctc 210
|||||| |||| |||||||| |||||| |||||| ||| |||||||||||||| ||||||
Sbjct: 26405133 ctcttctcccgcgccctccaaatcctcgcccagcaggagcccgtccgcctccagaagctc 26405192
Query: 211 tcgccgcccgactccgg 227
||| |||||||||||||
Sbjct: 26405193 tcggcgcccgactccgg 26405209
Score = 79.8 bits (40), Expect = 7e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 58 atgcgcagcctccggggcctcctcgccgtctccggccacctcgccgcccgccacgcgccg 117
||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 26405052 atgcgcatcctccggggaatcctcgccgtctccggccacctcgccggccgccgcgcgccg 26405111
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 229 atcgtggagctgaggctggagcggccggaggccaggaacgccatc 273
||||| ||||||||||||||||| ||||||| || ||||||||||
Sbjct: 26401479 atcgtagagctgaggctggagcgtccggaggtcaagaacgccatc 26401523
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 395 aggaaaggaggttaatgggctctagtgaagttcgggaatttgttaattcc 444
||||||||||||||||| || || | |||||||| |||||||| ||||||
Sbjct: 26406276 aggaaaggaggttaatgagcccttgcgaagttcgcgaatttgtcaattcc 26406325
Score = 42.1 bits (21), Expect = 1.5
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 183 gccggaccccgtccgcctccacaagctctcgccgcccgact 223
|||||| |||||| | ||||||||||||||| | |||||||
Sbjct: 26400578 gccggatcccgtcagtctccacaagctctcggcacccgact 26400618
>dbj|AP004676.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1003_B06
Length = 131956
Score = 178 bits (90), Expect = 1e-41
Identities = 156/178 (87%)
Strand = Plus / Plus
Query: 220 gactccgggatcgtggagctgaggctggagcggccggaggccaggaacgccatcgggaag 279
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5213 gactcagggatcgtggagatgaggctggagcggccggaggccaggaacgccatcgggagg 5272
Query: 280 gagatgctcaaggggctgcggagcgccatggacaaggtgggggccgacccgacggccaac 339
||||||||| ||||| |||||||||| || || |||||| ||| ||| ||||||| ||
Sbjct: 5273 gagatgctccaggggttgcggagcgcgatcgagaaggtgaaggctgacgcgacggcgaaa 5332
Query: 340 gtcgtgttggtcgcgagctccgtgcccaaggtcttctgcgcgggcgctgacctcaagg 397
|||||| || | ||||||||||| || ||||| |||||||| |||||||| |||||||
Sbjct: 5333 gtcgtgctgctggcgagctccgtcccgaaggttttctgcgctggcgctgatctcaagg 5390
Score = 89.7 bits (45), Expect = 7e-15
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 151 ctcttcgcccgggccctccagatcctctcccagccggaccccgtccgcctccacaagctc 210
|||||| |||| |||||||| |||||| |||||| ||| |||||||||||||| ||||||
Sbjct: 5049 ctcttctcccgcgccctccaaatcctcgcccagcaggagcccgtccgcctccagaagctc 5108
Query: 211 tcgccgcccgactccgg 227
||| |||||||||||||
Sbjct: 5109 tcggcgcccgactccgg 5125
Score = 79.8 bits (40), Expect = 7e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 58 atgcgcagcctccggggcctcctcgccgtctccggccacctcgccgcccgccacgcgccg 117
||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 4968 atgcgcatcctccggggaatcctcgccgtctccggccacctcgccggccgccgcgcgccg 5027
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 229 atcgtggagctgaggctggagcggccggaggccaggaacgccatc 273
||||| ||||||||||||||||| ||||||| || ||||||||||
Sbjct: 1395 atcgtagagctgaggctggagcgtccggaggtcaagaacgccatc 1439
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 395 aggaaaggaggttaatgggctctagtgaagttcgggaatttgttaattcc 444
||||||||||||||||| || || | |||||||| |||||||| ||||||
Sbjct: 6192 aggaaaggaggttaatgagcccttgcgaagttcgcgaatttgtcaattcc 6241
Score = 42.1 bits (21), Expect = 1.5
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 183 gccggaccccgtccgcctccacaagctctcgccgcccgact 223
|||||| |||||| | ||||||||||||||| | |||||||
Sbjct: 494 gccggatcccgtcagtctccacaagctctcggcacccgact 534
>gb|CP000251.1 | Anaeromyxobacter dehalogenans 2CP-C, complete genome
Length = 5013479
Score = 44.1 bits (22), Expect = 0.39
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 248 agcggccggaggccaggaacgc 269
||||||||||||||||||||||
Sbjct: 3340790 agcggccggaggccaggaacgc 3340811
Score = 44.1 bits (22), Expect = 0.39
Identities = 34/37 (91%), Gaps = 2/37 (5%)
Strand = Plus / Plus
Query: 99 cgccgcccgccacgcgccgccgagcggcgccgcctcg 135
||||||||||| ||||||||| ||||||||||||||
Sbjct: 916145 cgccgcccgcc--gcgccgccgcgcggcgccgcctcg 916179
Score = 42.1 bits (21), Expect = 1.5
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 ggccacctcgccgcccgccac 111
|||||||||||||||||||||
Sbjct: 2291327 ggccacctcgccgcccgccac 2291347
Score = 40.1 bits (20), Expect = 6.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 ccacctcgccgcccgccacgcgcc 116
||||||||||||||||| ||||||
Sbjct: 4634469 ccacctcgccgcccgccgcgcgcc 4634492
>gb|DQ002407.1 | Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
xilon1 retrotransposon, helitron B73_14578, gypsy
retrotransposon huck1 and ruda retrotransposon, complete
sequence
Length = 152384
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 83 ccgtctccggccacctcgcc 102
||||||||||||||||||||
Sbjct: 17263 ccgtctccggccacctcgcc 17244
>emb|AL353795.13 | Human DNA sequence from clone RP11-182N22 on chromosome 9 Contains a
novel gene, the VCP gene for valosin-containing protein,
the FANCG gene for Fanconi anemia, complementation group G
(FAG, XRCC9), the gene for phosphatidylinositol glycan
class O (PIGO), a novel gene, the STOML2 gene for stomatin
(EPB72)-like 2 (SLP-2), a novel gene (KIAA1539)
(FLJ11560), a zinc finger protein pseudogene, the 5' end
of the UNC13 gene for unc-13-like (C. elegans) (hmunc13)
and nine CpG islands, complete sequence
Length = 195102
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 37 actctcgcccgcctctccgc 56
||||||||||||||||||||
Sbjct: 42413 actctcgcccgcctctccgc 42432
>gb|AC140198.4 | Mus musculus BAC clone RP23-255C4 from 16, complete sequence
Length = 198007
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 283 atgctcaaggggctgcggag 302
||||||||||||||||||||
Sbjct: 188114 atgctcaaggggctgcggag 188095
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,255,170
Number of Sequences: 3902068
Number of extensions: 3255170
Number of successful extensions: 69838
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68211
Number of HSP's gapped (non-prelim): 1627
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)