ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40c07 |
|---|---|
| Clone Library Name | barley_pub |
>DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45| Length = 151 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/76 (27%), Positives = 38/76 (50%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 ++K K+F+ E+ KP A V + + +G H + + ++NP IP+ Sbjct: 5 MNKAKNFV------AEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVG 58 Query: 406 DIDYLIDSDGRKLVAG 453 +I Y + S GR +V+G Sbjct: 59 EIKYTLKSAGRVIVSG 74
>LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog| Length = 152 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 +DK K+++ E+ KP A V + + + + V + NP PIP+ Sbjct: 5 LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPIC 58 Query: 406 DIDYLIDSDGRKLVAG 453 +I Y + S G+++ +G Sbjct: 59 EIKYSLKSAGKEIASG 74
>LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A| Length = 151 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/76 (26%), Positives = 36/76 (47%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 ++K KDF+ +++ KP A V+ + + H+ + V + NP IP+ Sbjct: 5 LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPIC 58 Query: 406 DIDYLIDSDGRKLVAG 453 +I Y S GR + +G Sbjct: 59 EISYNFRSAGRGIASG 74
>UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 45) (Fragment) Length = 15 Score = 36.6 bits (83), Expect = 0.031 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +1 Query: 376 NPNPVPIPLVDIDYL 420 NPNPVPIPLVDIDYL Sbjct: 1 NPNPVPIPLVDIDYL 15
>LEA14_ARATH (O03983) Putative dessication-related protein LEA14| Length = 151 Score = 35.4 bits (80), Expect = 0.069 Identities = 19/76 (25%), Positives = 33/76 (43%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 +DK KDF+ D + KP V + + + + + V + NP IP+ Sbjct: 5 LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPIC 58 Query: 406 DIDYLIDSDGRKLVAG 453 +I + S GR++ G Sbjct: 59 EISFTFHSAGREIGKG 74
>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide| deformylase) Length = 188 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 + KV D I DI K+ + + SAD + P +G+++ LV+D+ +P P+ ++ Sbjct: 34 VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMI 89 Query: 406 D 408 + Sbjct: 90 N 90
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 0.99 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 126 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 0.99 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 126 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 0.99 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 126 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930| Length = 316 Score = 30.8 bits (68), Expect = 1.7 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV-LIKNPNP 387 ID + IH + K+EEA G G P+A ++ V G AD+V+DV + NP+ Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDVRFLPNPHW 220 Query: 388 VP 393 +P Sbjct: 221 IP 222
>ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 552 Score = 29.3 bits (64), Expect = 4.9 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Frame = +1 Query: 244 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVD----VLIKNPNPVPIPLVDI 411 ++ D G KI AVG+G LH DL+ + +K+ NP+ PL+D Sbjct: 364 YLKDHGRKI--AVGYGYT-------------LHICDLLPKSRGRIGLKSANPMDDPLIDP 408 Query: 412 DYLID-SDGRKLVAGL 456 +YL D D + ++AG+ Sbjct: 409 NYLSDPEDIKTMIAGI 424
>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQP 81 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQP 81 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQP 81 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>ALKJ_PSEOL (Q00593) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 558 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +1 Query: 244 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLVDIDYLI 423 ++ D G KI G+ D+ IGL K+ NP+ PL+D +YL Sbjct: 364 YLKDHGRKIAGGYGYTLHICDLLPKSRGRIGL-----------KSANPLQPPLIDPNYLS 412 Query: 424 D-SDGRKLVAGL 456 D D + ++AG+ Sbjct: 413 DHEDIKTMIAGI 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,225,977 Number of Sequences: 219361 Number of extensions: 510733 Number of successful extensions: 2270 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2268 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
