ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40c06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence Length = 154558 Score = 391 bits (197), Expect = e-105 Identities = 335/379 (88%), Gaps = 9/379 (2%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 96128 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 96069 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 96068 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 96009 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 96008 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 95949 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgtgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||| ||| Sbjct: 95948 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 95889 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggagaggaaggcggccgtgcggaggg 378 ||||||||||||| | ||||||||||||||| ||||| ||| |||||||||| | || Sbjct: 95888 cggaggcgcagaggacgttcttcgcgctgccgccggagcggagggcggccgtggcgcgga 95829 Query: 379 acgaggcggcgccgctggggtactacgagtcggagcacaccaagaacgtcagggactgga 438 ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| Sbjct: 95828 gcgaggcggcgccgatggggtactacgcgtccgagcacaccaagaacgtcagggactgga 95769 Query: 439 aggaggtgttcgacttcgt 457 |||||||||||||| |||| Sbjct: 95768 aggaggtgttcgacctcgt 95750
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 391 bits (197), Expect = e-105 Identities = 335/379 (88%), Gaps = 9/379 (2%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 23259647 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 23259588 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 23259587 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 23259528 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 23259527 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 23259468 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgtgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||| ||| Sbjct: 23259467 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 23259408 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggagaggaaggcggccgtgcggaggg 378 ||||||||||||| | ||||||||||||||| ||||| ||| |||||||||| | || Sbjct: 23259407 cggaggcgcagaggacgttcttcgcgctgccgccggagcggagggcggccgtggcgcgga 23259348 Query: 379 acgaggcggcgccgctggggtactacgagtcggagcacaccaagaacgtcagggactgga 438 ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| Sbjct: 23259347 gcgaggcggcgccgatggggtactacgcgtccgagcacaccaagaacgtcagggactgga 23259288 Query: 439 aggaggtgttcgacttcgt 457 |||||||||||||| |||| Sbjct: 23259287 aggaggtgttcgacctcgt 23259269 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 27290619 cgccgacgccgacgccatcccggtcatcgacctc 27290586 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 12367814 cggcgtgccggcggagagggtggcg 12367838 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 3487748 tcgccgccggcgacgaggccg 3487728
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 391 bits (197), Expect = e-105 Identities = 335/379 (88%), Gaps = 9/379 (2%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 23252675 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 23252616 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 23252615 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 23252556 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 23252555 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 23252496 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgtgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||| ||| Sbjct: 23252495 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 23252436 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggagaggaaggcggccgtgcggaggg 378 ||||||||||||| | ||||||||||||||| ||||| ||| |||||||||| | || Sbjct: 23252435 cggaggcgcagaggacgttcttcgcgctgccgccggagcggagggcggccgtggcgcgga 23252376 Query: 379 acgaggcggcgccgctggggtactacgagtcggagcacaccaagaacgtcagggactgga 438 ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| Sbjct: 23252375 gcgaggcggcgccgatggggtactacgcgtccgagcacaccaagaacgtcagggactgga 23252316 Query: 439 aggaggtgttcgacttcgt 457 |||||||||||||| |||| Sbjct: 23252315 aggaggtgttcgacctcgt 23252297 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 27381942 cgccgacgccgacgccatcccggtcatcgacctc 27381909 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 12364577 cggcgtgccggcggagagggtggcg 12364601 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 3487859 tcgccgccggcgacgaggccg 3487839
>dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full insert sequence Length = 1337 Score = 391 bits (197), Expect = e-105 Identities = 335/379 (88%), Gaps = 9/379 (2%) Strand = Plus / Plus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 65 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 124 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 125 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 184 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 185 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 244 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgtgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||| ||| Sbjct: 245 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 304 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggagaggaaggcggccgtgcggaggg 378 ||||||||||||| | ||||||||||||||| ||||| ||| |||||||||| | || Sbjct: 305 cggaggcgcagaggacgttcttcgcgctgccgccggagcggagggcggccgtggcgcgga 364 Query: 379 acgaggcggcgccgctggggtactacgagtcggagcacaccaagaacgtcagggactgga 438 ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| Sbjct: 365 gcgaggcggcgccgatggggtactacgcgtccgagcacaccaagaacgtcagggactgga 424 Query: 439 aggaggtgttcgacttcgt 457 |||||||||||||| |||| Sbjct: 425 aggaggtgttcgacctcgt 443
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 359 bits (181), Expect = 5e-96 Identities = 322/369 (87%) Strand = Plus / Minus Query: 89 catgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagcc 148 |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct: 9161110 catgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagcc 9161051 Query: 149 gaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcga 208 | || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 9161050 gtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccga 9160991 Query: 209 cgaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggtt 268 | || | |||||||||||||||||||||||| || |||||||||| ||||||||| || Sbjct: 9160990 tggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactggggctt 9160931 Query: 269 cttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgtgcgctggaggcgca 328 ||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||| Sbjct: 9160930 cttcgtggtggtgcgccacggcgtgccggaggaggtggtggcgagggcggcggaggcgca 9160871 Query: 329 gagggccttcttcgcgctgccggcggagaggaaggcggccgtgcggagggacgaggcggc 388 |||||| ||||||||||| ||| ||| | ||| |||||||||| | || ||||||||| Sbjct: 9160870 gagggcgttcttcgcgcttccgccggcgcggagggcggccgtggcgcggagcgaggcggc 9160811 Query: 389 gccgctggggtactacgagtcggagcacaccaagaacgtcagggactggaaggaggtgtt 448 || | |||||||||||| ||| || ||||| |||||||||||||||||||||||| ||| Sbjct: 9160810 gcagatggggtactacgcgtccgaccacacgcagaacgtcagggactggaaggaggcgtt 9160751 Query: 449 cgacttcgt 457 |||| |||| Sbjct: 9160750 cgacctcgt 9160742 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 3063850 cgccggcgacgaggccggcg 3063869
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 359 bits (181), Expect = 5e-96 Identities = 322/369 (87%) Strand = Plus / Minus Query: 89 catgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagcc 148 |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct: 96604 catgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagcc 96545 Query: 149 gaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcga 208 | || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 96544 gtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccga 96485 Query: 209 cgaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggtt 268 | || | |||||||||||||||||||||||| || |||||||||| ||||||||| || Sbjct: 96484 tggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactggggctt 96425 Query: 269 cttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgtgcgctggaggcgca 328 ||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||| Sbjct: 96424 cttcgtggtggtgcgccacggcgtgccggaggaggtggtggcgagggcggcggaggcgca 96365 Query: 329 gagggccttcttcgcgctgccggcggagaggaaggcggccgtgcggagggacgaggcggc 388 |||||| ||||||||||| ||| ||| | ||| |||||||||| | || ||||||||| Sbjct: 96364 gagggcgttcttcgcgcttccgccggcgcggagggcggccgtggcgcggagcgaggcggc 96305 Query: 389 gccgctggggtactacgagtcggagcacaccaagaacgtcagggactggaaggaggtgtt 448 || | |||||||||||| ||| || ||||| |||||||||||||||||||||||| ||| Sbjct: 96304 gcagatggggtactacgcgtccgaccacacgcagaacgtcagggactggaaggaggcgtt 96245 Query: 449 cgacttcgt 457 |||| |||| Sbjct: 96244 cgacctcgt 96236
>ref|XM_480999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 939 Score = 357 bits (180), Expect = 2e-95 Identities = 321/368 (87%) Strand = Plus / Plus Query: 90 atgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagccg 149 ||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct: 1 atgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagccg 60 Query: 150 accctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcgac 209 || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 61 tccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccgat 120 Query: 210 gaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggttc 269 | || | |||||||||||||||||||||||| || |||||||||| ||||||||| ||| Sbjct: 121 ggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactggggcttc 180 Query: 270 ttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgtgcgctggaggcgcag 329 |||||||||||||||||||||||||||| |||| ||||||| | ||| |||||||||| Sbjct: 181 ttcgtggtggtgcgccacggcgtgccggaggaggtggtggcgagggcggcggaggcgcag 240 Query: 330 agggccttcttcgcgctgccggcggagaggaaggcggccgtgcggagggacgaggcggcg 389 ||||| ||||||||||| ||| ||| | ||| |||||||||| | || |||||||||| Sbjct: 241 agggcgttcttcgcgcttccgccggcgcggagggcggccgtggcgcggagcgaggcggcg 300 Query: 390 ccgctggggtactacgagtcggagcacaccaagaacgtcagggactggaaggaggtgttc 449 | | |||||||||||| ||| || ||||| |||||||||||||||||||||||| |||| Sbjct: 301 cagatggggtactacgcgtccgaccacacgcagaacgtcagggactggaaggaggcgttc 360 Query: 450 gacttcgt 457 ||| |||| Sbjct: 361 gacctcgt 368
>dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B03, full insert sequence Length = 1449 Score = 283 bits (143), Expect = 2e-73 Identities = 215/239 (89%) Strand = Plus / Plus Query: 219 gtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggttcttcgtggtg 278 ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||| Sbjct: 311 gtggacgcgctcgcggcggaggtcgggagggcgagccgggactggggcttcttcgtggtg 370 Query: 279 gtgcgccacggcgtgccggcggagacggtggcgcgtgcgctggaggcgcagagggccttc 338 ||||||||||| ||||| |||||| |||||||||| ||| ||||||||||||| | ||| Sbjct: 371 gtgcgccacggtgtgcccgcggaggcggtggcgcgcgcggcggaggcgcagaggacgttc 430 Query: 339 ttcgcgctgccggcggagaggaaggcggccgtgcggagggacgaggcggcgccgctgggg 398 |||||||||||| ||||| ||| |||||||||| | || ||||||||||||| ||||| Sbjct: 431 ttcgcgctgccgccggagcggagggcggccgtggcgcggagcgaggcggcgccgatgggg 490 Query: 399 tactacgagtcggagcacaccaagaacgtcagggactggaaggaggtgttcgacttcgt 457 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 491 tactacgcgtccgagcacaccaagaacgtcagggactggaaggaggtgttcgacctcgt 549 Score = 89.7 bits (45), Expect = 7e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 62 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 121 Query: 148 cgaccctcgccga 160 || || ||||||| Sbjct: 122 cgtccgtcgccga 134
>gb|AY108935.1| Zea mays PCO091688 mRNA sequence Length = 1084 Score = 155 bits (78), Expect = 2e-34 Identities = 119/133 (89%) Strand = Plus / Plus Query: 320 ggaggcgcagagggccttcttcgcgctgccggcggagaggaaggcggccgtgcggaggga 379 |||||||||| | || ||||||||||||||||| ||| ||||||| |||||||||||| | Sbjct: 29 ggaggcgcagcgcgcgttcttcgcgctgccggcagagcggaaggccgccgtgcggaggaa 88 Query: 380 cgaggcggcgccgctggggtactacgagtcggagcacaccaagaacgtcagggactggaa 439 |||||||| || | |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 89 cgaggcggagcgcntcgggtactacgagtcggagcacaccaagaacgtgagggactggaa 148 Query: 440 ggaggtgttcgac 452 |||||||| |||| Sbjct: 149 ggaggtgtacgac 161
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 13776 cgccgacgccgacgccatcccggtcatcgacctc 13809
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 202 ccggcgacgaggccggcgtggacgcg 227 |||||||||||||||||||||||||| Sbjct: 3445132 ccggcgacgaggccggcgtggacgcg 3445157
>emb|AJ300720.1|PPI300720 Pinus pinaster partial mRNA for putative oxylase protein Length = 633 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 411 gagcacaccaagaacgtcagggactggaaggaggtgttcga 451 |||| ||| |||||||||||||||||||| ||||| ||||| Sbjct: 204 gagctcacaaagaacgtcagggactggaaagaggtcttcga 244
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 60 gatctgctgatcgccgatctcgac 83 |||||||||||||||||||||||| Sbjct: 3663580 gatctgctgatcgccgatctcgac 3663557
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 181 tcgacctctcccctctcgccgccggcga 208 |||||||||||||||||||| ||||||| Sbjct: 7030809 tcgacctctcccctctcgcccccggcga 7030782 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 5747795 ctcgacatcgccatgggcggc 5747815 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 296 ggcggagacggtggcgcgtgcgctggagg 324 ||||| |||||||||||| |||||||||| Sbjct: 3246188 ggcggcgacggtggcgcgggcgctggagg 3246160
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 206 cgacgaggccggcgtggacgcgct 229 |||||||||||||||||||||||| Sbjct: 3287903 cgacgaggccggcgtggacgcgct 3287880 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 1302753 cgccggcgacgaggccggcg 1302734
>ref|NM_195472.1| Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OJ1004_F02.14), mRNA Length = 4017 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 295 cggcggagacggtggcgcgtgcg 317 ||||||||||||||||||||||| Sbjct: 2987 cggcggagacggtggcgcgtgcg 3009
>ref|XM_464672.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1856 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 615 gccgccggcgacgaggccggcgt 593
>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02 map C8, complete sequence Length = 116304 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 295 cggcggagacggtggcgcgtgcg 317 ||||||||||||||||||||||| Sbjct: 64181 cggcggagacggtggcgcgtgcg 64159
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 41319 ggcggggacgagctggaggccgaggtgggcagggcgagc 41357
>emb|X54638.1|BJGLYA B. japonicum glyA gene for serine hydroxymethyltransferase Length = 2564 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 197 cgccgccggcgacgaggccggcg 219 ||||||||||||||||||||||| Sbjct: 1701 cgccgccggcgacgaggccggcg 1679
>gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0014J14, complete sequence Length = 191397 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 295 cggcggagacggtggcgcgtgcg 317 ||||||||||||||||||||||| Sbjct: 32921 cggcggagacggtggcgcgtgcg 32899
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1765399 ggcggggacgagctggaggccgaggtgggcagggcgagc 1765437 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 19820751 tcgccgccgtcgacgaggccggcg 19820774
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1823489 ggcggggacgagctggaggccgaggtgggcagggcgagc 1823527
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 295 cggcggagacggtggcgcgtgcg 317 ||||||||||||||||||||||| Sbjct: 7207563 cggcggagacggtggcgcgtgcg 7207541 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 18235492 cctctcccctctcgccgccg 18235511
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 6637687 gccgccggcgacgaggccggcgt 6637665 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggtggtgcgccacggcgtgc 294 |||||||||||||||||||| Sbjct: 23488823 ggtggtgcgccacggcgtgc 23488842
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 197 cgccgccggcgacgaggccggcg 219 ||||||||||||||||||||||| Sbjct: 5579382 cgccgccggcgacgaggccggcg 5579404 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 tcgacatcgccatgggcggcctctc 103 |||||||||||||||||||| |||| Sbjct: 5054032 tcgacatcgccatgggcggcgtctc 5054056
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 72062 gccgccggcgacgaggccggcgt 72040
>dbj|AK106901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H08, full insert sequence Length = 2128 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1306 ggcggggacgagctggaggccgaggtgggcagggcgagc 1268
>dbj|AK105964.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E05, full insert sequence Length = 1856 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 615 gccgccggcgacgaggccggcgt 593
>dbj|AK073051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000F22, full insert sequence Length = 2436 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 754 ggcggggacgagctggaggccgaggtgggcagggcgagc 792
>emb|AM181540.1| Microbacterium aurum partial ppk gene for polyphosphatkinase, type strain DSM 8600 Length = 1382 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 60 gatctgctgatcgccgatctcgacatc 86 ||||||||||||||||| ||||||||| Sbjct: 349 gatctgctgatcgccgaactcgacatc 375
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 295 cggcggagacggtggcgcgtgcg 317 ||||||||||||||||||||||| Sbjct: 7210859 cggcggagacggtggcgcgtgcg 7210837 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 18244745 cctctcccctctcgccgccg 18244764
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1821210 ggcggggacgagctggaggccgaggtgggcagggcgagc 1821248
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1765377 ggcggggacgagctggaggccgaggtgggcagggcgagc 1765415 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 19746965 tcgccgccgtcgacgaggccggcg 19746988
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 75083 ggcggggacgagctggaggccgaggtgggcagggcgagc 75045
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1522 ggcggggacgagctggaggccgaggtgggcagggcgagc 1484
>gb|BT017730.1| Zea mays clone EL01N0448B11.c mRNA sequence Length = 871 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 cgccgccggcgacgaggccggc 218 |||||||||||||||||||||| Sbjct: 51 cgccgccggcgacgaggccggc 30
>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18, complete sequence Length = 176615 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 57082 ccctcccgccgccggcgacgaggccg 57107
>gb|AE005967.1| Caulobacter crescentus CB15 section 293 of 359 of the complete genome Length = 10677 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 77 tctcgacatcgccatgggcggc 98 |||||||||||||||||||||| Sbjct: 3729 tctcgacatcgccatgggcggc 3708
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 23892209 ccctcccgccgccggcgacgaggccg 23892234
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 11305921 ccctcccgccgccggcgacgaggccg 11305946
>dbj|AP002873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0552C05 Length = 136586 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 19506 ccctcccgccgccggcgacgaggccg 19531
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 93326 ccctcccgccgccggcgacgaggccg 93351
>dbj|AK099995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132J01, full insert sequence Length = 1262 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 145 ccctcccgccgccggcgacgaggccg 120
>dbj|AK061087.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G06, full insert sequence Length = 1030 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 138 ccctcccgccgccggcgacgaggccg 113
>ref|NM_187741.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3594 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 506 tcgccgccggcgacgaggccg 486
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 57 cttgatctgctgatcgccgatctcg 81 ||||||||||| ||||||||||||| Sbjct: 5332506 cttgatctgctcatcgccgatctcg 5332530 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcgg 97 |||||||||||||||||||| Sbjct: 6018387 ctcgacatcgccatgggcgg 6018406
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 34204 tggacgcgctcgcggccgagg 34224
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 2281 tggacgcgctcgcggccgagg 2301
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 33081 tggacgcgctcgcggccgagg 33101
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 3269 ctcgacatcgccatgggcggc 3289
>gb|AC162467.6| Mus musculus 10 BAC RP24-528H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172752 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ctctccatgggccaggccttc 119 ||||||||||||||||||||| Sbjct: 37530 ctctccatgggccaggccttc 37550
>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose pyrophosphatase Length = 642 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 277 ctcgacatcgccatgggcggc 297
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 26832 cggcgtgccggcggagagggtggcg 26856
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence Length = 197615 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 17396 ctcgacatcgccatgggcggc 17416
>gb|AE005862.1| Caulobacter crescentus CB15 section 188 of 359 of the complete genome Length = 10016 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 6359 tcgccgccggcgacgaggccg 6379
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 22627 tcgccgccggcgacgaggccg 22647
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 347 gccggcggagaggaaggcggccgtg 371 ||||||||||| ||||||||||||| Sbjct: 7078564 gccggcggagaagaaggcggccgtg 7078540 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggcggagaggaaggcggccg 369 |||||||||||||||||||| Sbjct: 6805364 ggcggagaggaaggcggccg 6805383
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 215 cggcgtggacgcgctcgcggccgaggtgg 243 ||||||||||||| |||||| |||||||| Sbjct: 1371229 cggcgtggacgcggtcgcggtcgaggtgg 1371201 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 4991718 cgccggcgacgaggccggcg 4991737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cgaggccggcgtggacgcgc 228 |||||||||||||||||||| Sbjct: 4338546 cgaggccggcgtggacgcgc 4338565 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cgtggacgcgctcgcggccg 237 |||||||||||||||||||| Sbjct: 1784773 cgtggacgcgctcgcggccg 1784754 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgtggacg 225 |||| |||||||||||||||||| |||| Sbjct: 394795 gccgtcggcgacgaggccggcgtcgacg 394768
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 5401 tcgccgccggcgacgaggccg 5381
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 4279737 ctcgacatcgccatgggcggc 4279757 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cggtggcgcgtgcgctggag 323 |||||||||||||||||||| Sbjct: 5195732 cggtggcgcgtgcgctggag 5195751 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 71 cgccgatctcgacatcgccatgggcggc 98 ||||||| ||| |||||||||||||||| Sbjct: 2010671 cgccgatatcggcatcgccatgggcggc 2010644
>gb|AF153086.1|AF153086 Burkholderia sp. DSMZ 9242 polyhydroxyalkanoate biosynthesis gene cluster and unknown gene, complete cds Length = 5500 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 279 gtgcgccacggcgtgccggcggagacggtggcg 311 ||||||||||||||| |||||||| || ||||| Sbjct: 3101 gtgcgccacggcgtgacggcggagtcgctggcg 3133
>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0080E19 Length = 152755 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 347 gccggcggagaggaaggcggccgtg 371 ||||||||||| ||||||||||||| Sbjct: 99351 gccggcggagaagaaggcggccgtg 99327
>ref|XM_316385.2| Anopheles gambiae str. PEST ENSANGP00000013025 (ENSANGG00000010536), partial mRNA Length = 6210 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 431 ggactggaaggaggtgttcgacttc 455 ||||||||||||||||||| ||||| Sbjct: 4797 ggactggaaggaggtgttcaacttc 4821
>dbj|AK105244.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F08, full insert sequence Length = 1483 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 117 cggcgtgccggcggagagggtggcg 141
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 ctcgccgacgcggacggcatc 173 ||||||||||||||||||||| Sbjct: 2077984 ctcgccgacgcggacggcatc 2078004
>ref|XM_480142.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 340 cgccggcgacgaggccggcg 321
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 tcgccgacgcggacggcatcccgg 177 |||||| ||||||||||||||||| Sbjct: 532973 tcgccggcgcggacggcatcccgg 532950
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 167285 acggcgtgccggcggagacg 167304
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gtcagggactggaaggaggt 445 |||||||||||||||||||| Sbjct: 2900 gtcagggactggaaggaggt 2919
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06, complete sequence Length = 160907 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 19795 acggcgtgccggcggagacg 19814
>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08, complete sequence Length = 95638 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cccctctcgccgccggcgac 209 |||||||||||||||||||| Sbjct: 51569 cccctctcgccgccggcgac 51588
>gb|AC146118.3| Pan troglodytes BAC clone RP43-23A6 from 7, complete sequence Length = 166241 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 14571 gcgctggaggcgcagagggc 14552
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 3029484 gttcttcgtggtggtgcgcc 3029503
>gb|AC004987.2| Homo sapiens PAC clone RP5-1173I20 from 7, complete sequence Length = 111158 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 21101 gcgctggaggcgcagagggc 21082
>gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184c17 map 16, complete sequence Length = 146040 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 gtcagggactggaaggaggt 445 |||||||||||||||||||| Sbjct: 31310 gtcagggactggaaggaggt 31291
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 12565 cctctccatgggccaggcct 12584
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 gtggcgcgtgcgctggaggcgcag 329 |||||||| ||||||||||||||| Sbjct: 165626 gtggcgcgcgcgctggaggcgcag 165603
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggacgaggcggcgccgctgg 396 |||||||||||||||||||| Sbjct: 94121 ggacgaggcggcgccgctgg 94102
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 gtggcgcgtgcgctggaggcgcag 329 |||||||| ||||||||||||||| Sbjct: 313006 gtggcgcgcgcgctggaggcgcag 312983
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggacgaggcggcgccgctgg 396 |||||||||||||||||||| Sbjct: 95317 ggacgaggcggcgccgctgg 95298
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggacgaggcggcgccgctgg 396 |||||||||||||||||||| Sbjct: 61595 ggacgaggcggcgccgctgg 61576
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 gtggcgcgtgcgctggaggcgcag 329 |||||||| ||||||||||||||| Sbjct: 97051 gtggcgcgcgcgctggaggcgcag 97028
>emb|AL672112.1|MLO672112 Mesorhizobium loti R7A symbiosis island; segment 1/4 Length = 150050 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cggtggcgcgtgcgctggag 323 |||||||||||||||||||| Sbjct: 78764 cggtggcgcgtgcgctggag 78745
>gb|AC161348.2| Mus musculus chromosome 5, clone RP23-393E10, complete sequence Length = 221768 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 30846 cctctccatgggccaggcct 30827
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 115678 cctctcccctctcgccgccg 115659
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||||||||| |||||||| Sbjct: 2995876 tcgccgccggcgacgtggccggcg 2995853
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 2964989 gttcttcgtggtggtgcgcc 2965008
>emb|CR614530.1| full-length cDNA clone CS0DL003YE05 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1244 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 18 gcgctggaggcgcagagggc 37
>emb|CR611778.1| full-length cDNA clone CS0DA012YM20 of Neuroblastoma of Homo sapiens (human) Length = 1737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 20 gcgctggaggcgcagagggc 39
>emb|CR597893.1| full-length cDNA clone CS0DI054YH10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1657 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 20 gcgctggaggcgcagagggc 39
>gb|AE011888.1| Xanthomonas axonopodis pv. citri str. 306, section 266 of 469 of the complete genome Length = 10774 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 5229 gttcttcgtggtggtgcgcc 5248
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 gtcagggactggaaggaggt 445 |||||||||||||||||||| Sbjct: 6620 gtcagggactggaaggaggt 6639
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcgtgcaggcccccgagcat 137 |||||||||||||||||||| Sbjct: 2640012 tcgtgcaggcccccgagcat 2639993
>gb|AC148823.4| Pan troglodytes BAC clone CH251-558F7 from chromosome 7, complete sequence Length = 130069 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 36510 gcgctggaggcgcagagggc 36529
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tctgctgatcgccgatctcg 81 |||||||||||||||||||| Sbjct: 1186238 tctgctgatcgccgatctcg 1186257 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gcgtgccggcggagacggtg 308 |||||||||||||||||||| Sbjct: 655430 gcgtgccggcggagacggtg 655411
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acgaggccggcgtggacgcg 227 |||||||||||||||||||| Sbjct: 26234 acgaggccggcgtggacgcg 26253
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 27567232 tcgccgccggcgacgaggcc 27567213
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 28087120 acggcgtgccggcggagacg 28087139 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cccctctcgccgccggcgac 209 |||||||||||||||||||| Sbjct: 26354216 cccctctcgccgccggcgac 26354235
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 gtcagggactggaaggaggt 445 |||||||||||||||||||| Sbjct: 71215 gtcagggactggaaggaggt 71196
>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence Length = 199782 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 73144 cctctccatgggccaggcct 73163
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 24225 tcgccgccggcgacgaggcc 24206
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 131203 tcgccgccggcgacgaggcc 131184
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggcggagaggaaggcggccg 369 |||||||||||||||||||| Sbjct: 135043 ggcggagaggaaggcggccg 135062
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggtggtgcgccacggcgtgc 294 |||||||||||||||||||| Sbjct: 54506 ggtggtgcgccacggcgtgc 54525
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggtggtgcgccacggcgtgc 294 |||||||||||||||||||| Sbjct: 107498 ggtggtgcgccacggcgtgc 107517
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 114573 cgccggcgacgaggccggcg 114592
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1066_B03 Length = 115339 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 23334 cgccggcgacgaggccggcg 23353
>dbj|AK073934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076L21, full insert sequence Length = 1282 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ggcggagaggaaggcggccg 369 |||||||||||||||||||| Sbjct: 398 ggcggagaggaaggcggccg 417
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 |||||| ||||||||||||||||| Sbjct: 102925 tcgccgtcggcgacgaggccggcg 102948
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 cggcggagaggaaggcggcc 368 |||||||||||||||||||| Sbjct: 2001237 cggcggagaggaaggcggcc 2001256 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 71 cgccgatctcgacatcgccatgggcggc 98 ||||||| ||| |||||||||||||||| Sbjct: 681405 cgccgatatcggcatcgccatgggcggc 681378
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 8536 gttcttcgtggtggtgcgcc 8517
>dbj|AK063781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D07, full insert sequence Length = 947 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 355 acggcgtgccggcggagacg 374
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 2990891 gttcttcgtggtggtgcgcc 2990910
>emb|AM181553.1| Microbacterium laevaniformans partial ppk gene for polyphosphatkinase, type strain DSM 20140 Length = 1377 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ctgctgatcgccgatctcgacatc 86 |||||||||||||| ||||||||| Sbjct: 352 ctgctgatcgccgaactcgacatc 375
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gccggcgacgaggccggcgt 220 |||||||||||||||||||| Sbjct: 2591506 gccggcgacgaggccggcgt 2591487
>emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa0035B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161160 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 97637 tcgccgccgtcgacgaggccggcg 97660
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cggtggcgcgtgcgctggag 323 |||||||||||||||||||| Sbjct: 226843 cggtggcgcgtgcgctggag 226824
>gb|L24487.1|SH1DNAPOLA Pseudorabies virus DNA polymerase gene, partial cds Length = 3144 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acgaggccggcgtggacgcg 227 |||||||||||||||||||| Sbjct: 629 acgaggccggcgtggacgcg 648
>gb|M21694.1|APHOVP1I2 Foot and mouth disease virus (serotype O) variant VP1 capsid protein gene, partial cds Length = 204 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggtgggcagggcgagccggg 258 |||||||||||||||||||| Sbjct: 36 ggtgggcagggcgagccggg 17 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,934,670 Number of Sequences: 3902068 Number of extensions: 2934670 Number of successful extensions: 100060 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93050 Number of HSP's gapped (non-prelim): 6998 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
