>CCSA_ODOSI (P49523) Cytochrome c biogenesis protein ccsA|
          Length = 312

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 144 GKRAARIGDLGFALVWLARFGYRFL 70
           GK+ A +G LGF ++W+   G  FL
Sbjct: 277 GKKTAILGGLGFFVIWICYLGVNFL 301

>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:|
            [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38);
            [Acyl-carrier-protein] S-malonyltransferase (EC
            2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC
            2.3.1.41); 3-oxoacyl-[acyl-
          Length = 2511

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -2

Query: 139  EGSSDWR-------FGVCVGLARPLRIPISAGHRGRDLYRKSWQGQRTGR 11
            E S+DWR        G+  G+ RPL+  +  G +  D +R   QG+  G+
Sbjct: 1802 ESSADWREVWALVQAGIRDGVVRPLKCTVFHGAQVEDAFRYMAQGKHIGK 1851

>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 2   PAPPTRSLPLPRFAIQIAAAVTSRNRYPKRASQTNA 109
           PAP + SLPL    I  +  V+S ++ P RASQ +A
Sbjct: 219 PAPASGSLPLSAGGIGNSITVSSSSQPPARASQLHA 254

>CCSA_CYAPA (P48257) Cytochrome c biogenesis protein ccsA|
          Length = 322

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 144 GKRAARIGDLGFALVWLARFGYRFL 70
           GK+AA +  LGF ++W+   G   L
Sbjct: 287 GKKAAMVASLGFFIIWICYLGVNLL 311

>SGO1_YEAST (Q08490) Shugoshin|
          Length = 590

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 11  PTRSLPLPRFAIQIAAAVTSRNR---YPKRASQTNANPKSPIRAALFP 145
           P+  LPLP          T+ +    YP  +S TN++PK+ I+ ++ P
Sbjct: 291 PSNPLPLPLPGPSATLPTTTSDASTVYPSSSSSTNSHPKTKIKHSMKP 338

>CCSA_PORPU (P51369) Cytochrome c biogenesis protein ccsA|
          Length = 319

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 144 GKRAARIGDLGFALVWLARFGYRFL 70
           GKR A +  +GF +VW+   G  FL
Sbjct: 284 GKRPAILASVGFLVVWICYLGVNFL 308

>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B|
            precursor (Low-density lipoprotein receptor-related
            protein-deleted in tumor) (LRP-DIT)
          Length = 4599

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 1    TCPPYPFSAPATICDTDRGRGDQQKSVSEAGEPNQRKPQ 117
            TC P+ F      C  D  R D Q   S+  + +  KPQ
Sbjct: 3475 TCGPHEFQCKNNNCIPDHWRCDNQNDCSDNSDEDNCKPQ 3513


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,074,978
Number of Sequences: 219361
Number of extensions: 722558
Number of successful extensions: 2208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2208
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)