ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p... 30 2.0
2FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) ... 30 3.5
3SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment) 28 7.7

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 17  LPPWEPELKAPPSATSRPSLARSELEPLGSV 109
           LPP +P+L+ PPS    P L ++ +  +GS+
Sbjct: 753 LPPPQPQLQPPPSPQQMPPLEKARIAGVGSL 783



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>FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) (Leukocyte|
           formin) (CLL-associated antigen KW-13)
          Length = 1100

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 8   AARLPPWEPELKAPPSATSRPSLARSELEPL 100
           A+R PP EPE KAPP+A +RPS    ++E L
Sbjct: 455 ASRRPP-EPE-KAPPAAPTRPSALELKVEEL 483



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>SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment)|
          Length = 115

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 111 STDPSGSSSDLARDGREVADGGALSSGSHGGN 16
           S+  SGSSS  + +G   + G + SSGS GG+
Sbjct: 77  SSGSSGSSSSSSSNGSGSSSGSSQSSGSQGGS 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,401,520
Number of Sequences: 219361
Number of extensions: 471731
Number of successful extensions: 2000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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