ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40b10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468656.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1384 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgt 298 ||||||||||||||||||||||||| Sbjct: 669 ccgccgccgccgcctgcgctgccgt 645
>ref|XM_468655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1091 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgt 298 ||||||||||||||||||||||||| Sbjct: 376 ccgccgccgccgcctgcgctgccgt 352
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgtgagc 302 ||||||||||||||||||||| ||||||| Sbjct: 187518 ccgccgccgccgcctgcgctggcgtgagc 187490
>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039N21, complete sequence Length = 151732 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgt 298 ||||||||||||||||||||||||| Sbjct: 3713 ccgccgccgccgcctgcgctgccgt 3689
>gb|AC092262.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C05 map C12819S, complete sequence Length = 113266 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgt 298 ||||||||||||||||||||||||| Sbjct: 98559 ccgccgccgccgcctgcgctgccgt 98535
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgt 298 ||||||||||||||||||||||||| Sbjct: 16860709 ccgccgccgccgcctgcgctgccgt 16860685 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 gccgccgccgcctgcgctgccg 297 |||||||||||||||||||||| Sbjct: 8938628 gccgccgccgcctgcgctgccg 8938649 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 33209577 cggtgcccgccgccgccgcc 33209596
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgt 298 ||||||||||||||||||||||||| Sbjct: 16854342 ccgccgccgccgcctgcgctgccgt 16854318 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 gccgccgccgcctgcgctgccg 297 |||||||||||||||||||||| Sbjct: 8936463 gccgccgccgcctgcgctgccg 8936484 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 33300087 cggtgcccgccgccgccgcc 33300106
>dbj|AK071008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080E10, full insert sequence Length = 1218 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccgt 298 ||||||||||||||||||||||||| Sbjct: 506 ccgccgccgccgcctgcgctgccgt 482
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 273 cccgccgccgccgcctgcgctgcc 296 |||||||||||||||||||||||| Sbjct: 24133052 cccgccgccgccgcctgcgctgcc 24133075 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 14812272 ccgccgccgccgcctgcgccgccg 14812249 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 gctccgccgtcggccacctc 63 |||||||||||||||||||| Sbjct: 5318078 gctccgccgtcggccacctc 5318059
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 273 cccgccgccgccgcctgcgctgcc 296 |||||||||||||||||||||||| Sbjct: 66510 cccgccgccgccgcctgcgctgcc 66533
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 273 cccgccgccgccgcctgcgctgcc 296 |||||||||||||||||||||||| Sbjct: 142745 cccgccgccgccgcctgcgctgcc 142768
>dbj|AK119314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G11, full insert sequence Length = 2218 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 273 cccgccgccgccgcctgcgctgcc 296 |||||||||||||||||||||||| Sbjct: 162 cccgccgccgccgcctgcgctgcc 185
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 47 ccgccgtcggccacctcgcgcc 68 |||||||||||||||||||||| Sbjct: 625671 ccgccgtcggccacctcgcgcc 625650
>ref|NM_187489.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1512 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 gccgccgccgcctgcgctgccg 297 |||||||||||||||||||||| Sbjct: 418 gccgccgccgcctgcgctgccg 397
>gb|AC149044.1| Pan troglodytes chromosome X clone PTB-089E19 map human ortholog q27.1, complete sequence Length = 193569 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 21385 gcccgccgccgccgcccgcgctgccg 21360
>ref|XM_847841.1| PREDICTED: Canis familiaris similar to SRY (sex determining region Y)-box 3, transcript variant 2 (LOC492178), mRNA Length = 1375 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 863 gcccgccgccgccgcccgcgctgccg 888
>ref|XM_549298.2| PREDICTED: Canis familiaris similar to SRY (sex determining region Y)-box 3, transcript variant 1 (LOC492178), mRNA Length = 1105 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 593 gcccgccgccgccgcccgcgctgccg 618
>ref|XM_861448.1| PREDICTED: Canis familiaris similar to SRY (sex determining region Y)-box 3, transcript variant 4 (LOC492178), mRNA Length = 1023 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 638 gcccgccgccgccgcccgcgctgccg 663
>ref|XM_861433.1| PREDICTED: Canis familiaris similar to SRY (sex determining region Y)-box 3, transcript variant 3 (LOC492178), mRNA Length = 1075 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 638 gcccgccgccgccgcccgcgctgccg 663
>emb|AL121875.10|HSBA51C14 Human DNA sequence from clone RP11-51C14 on chromosome Xq26.2-27.3 Contains an embryonic ectoderm development (EED) pseudogene, a ribosomal protein S17 (RPS17) pseudogene, the SOX3 gene for SRY (sex determining region Y)-box 3 and three CpG islands, complete sequence Length = 148598 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 106378 gcccgccgccgccgcccgcgctgccg 106353
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09, complete sequence Length = 143595 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 gccgccgccgcctgcgctgccg 297 |||||||||||||||||||||| Sbjct: 63489 gccgccgccgcctgcgctgccg 63510
>gb|BC093865.1| Homo sapiens SRY (sex determining region Y)-box 3, mRNA (cDNA clone MGC:120900 IMAGE:7939710), complete cds Length = 1421 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 922 gcccgccgccgccgcccgcgctgccg 947
>gb|BC093863.1| Homo sapiens SRY (sex determining region Y)-box 3, mRNA (cDNA clone MGC:120898 IMAGE:7939708), complete cds Length = 1431 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 922 gcccgccgccgccgcccgcgctgccg 947
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 tcggccacctcgcgcccgtctc 74 |||||||||||||||||||||| Sbjct: 8942429 tcggccacctcgcgcccgtctc 8942408
>gb|AC005905.1| Homo sapiens 3 PAC RPCI5-1038J14 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 104287 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcctgcgctgccg 297 |||||||||||||||||||| |||| |||| Sbjct: 88076 cggtgcccgccgccgccgcccgcgccgccg 88105
>gb|AF264713.1|AF264713 Homo sapiens sex determining region Y box 3 (SOX3) gene, complete cds Length = 1692 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 983 gcccgccgccgccgcccgcgctgccg 1008
>dbj|AK111884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059J17, full insert sequence Length = 1853 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 gccgccgccgcctgcgctgccg 297 |||||||||||||||||||||| Sbjct: 453 gccgccgccgcctgcgctgccg 432
>dbj|AK111855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016N09, full insert sequence Length = 2691 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 gccgccgccgcctgcgctgccg 297 |||||||||||||||||||||| Sbjct: 453 gccgccgccgcctgcgctgccg 432
>gb|U46071.1|RCU46071 Rhodobacter capsulatus cytochrome c biogenesis (cycH) gene, complete cds, and sarcosine oxidase gene, partial cds Length = 3164 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 tgcccgccgccgccgcctgcgc 292 |||||||||||||||||||||| Sbjct: 1350 tgcccgccgccgccgcctgcgc 1329
>ref|NM_005634.2| Homo sapiens SRY (sex determining region Y)-box 3 (SOX3), mRNA Length = 2074 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgccg 297 |||||||||||||||| ||||||||| Sbjct: 866 gcccgccgccgccgcccgcgctgccg 891
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ccgccgtcggccacctcgcgc 67 ||||||||||||||||||||| Sbjct: 997655 ccgccgtcggccacctcgcgc 997635
>gb|AY553634.1| Cynodon dactylon phytochelatins synthase pcsII mRNA, complete cds Length = 1020 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 ccggccttctccggcctcgcctcgc 159 |||||||||| |||||||||||||| Sbjct: 261 ccggccttctgcggcctcgcctcgc 285
>ref|XM_981796.1| PREDICTED: Mus musculus hypothetical protein LOC670522 (LOC670522), mRNA Length = 561 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 acggtgcccgccgccgccgcc 287 ||||||||||||||||||||| Sbjct: 308 acggtgcccgccgccgccgcc 328
>gb|AC110607.7| Homo sapiens chromosome 15, clone CTD-2632K10, complete sequence Length = 160452 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctg 294 ||||||||||||||||||||| Sbjct: 131665 ccgccgccgccgcctgcgctg 131645
>gb|AC046168.12| Homo sapiens chromosome 15, clone RP11-307C19, complete sequence Length = 180484 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 ccgccgccgccgcctgcgctg 294 ||||||||||||||||||||| Sbjct: 146253 ccgccgccgccgcctgcgctg 146273
>gb|AC139676.3| Homo sapiens chromosome 8, clone RP13-648O9, complete sequence Length = 166153 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 gcccgccgccgccgcctgcgc 292 ||||||||||||||||||||| Sbjct: 3453 gcccgccgccgccgcctgcgc 3433
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ccgccgtcggccacctcgcgc 67 ||||||||||||||||||||| Sbjct: 453462 ccgccgtcggccacctcgcgc 453442
>gb|AF055575.1|AF055575 Homo sapiens voltage-gated calcium channel alpha 1 subunit (CACNA1D) gene, partial cds Length = 5688 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcctgcgc 292 |||||||||||||||||||| |||| Sbjct: 2434 cggtgcccgccgccgccgcccgcgc 2410
>gb|M76558.1|HUMCACNLS Human neuronal DHP-sensitive, voltage-dependent, calcium channel alpha-1D subunit mRNA, complete cds Length = 7635 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcctgcgc 292 |||||||||||||||||||| |||| Sbjct: 85 cggtgcccgccgccgccgcccgcgc 61
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 1869732 gcccgccgccgccgcctgcg 1869751
>ref|XM_510117.1| PREDICTED: Pan troglodytes similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase, delta); Calmodulin 1 (phosphorylase kinase delta) (LOC453100), mRNA Length = 2356 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 72 ccgccgccgccgcctgcgccgccg 49
>ref|XM_483617.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2527 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 1234 cggtgcccgccgccgccgcc 1215
>ref|XM_475840.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cccgccgccgccgcctgcgc 292 |||||||||||||||||||| Sbjct: 114 cccgccgccgccgcctgcgc 95
>ref|NM_195158.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0047G15.10), mRNA Length = 600 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 50 cggtgcccgccgccgccgcc 31
>ref|XM_469988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 798 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 223 cggtgcccgccgccgccgcc 204
>ref|NM_001030788.1| Gallus gallus ADP-ribosylation factor-like 6 (ARL6), mRNA Length = 1271 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cccgccgccgccgcctgcgc 292 |||||||||||||||||||| Sbjct: 37 cccgccgccgccgcctgcgc 18
>ref|NM_197703.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0010C11.8), mRNA Length = 759 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 83 cggtgcccgccgccgccgcc 64
>ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cggcgtcgttggggtcgcgg 410 |||||||||||||||||||| Sbjct: 177 cggcgtcgttggggtcgcgg 158
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 141403 ccgccgccgccgccggcgctgccg 141380
>ref|XM_614755.2| PREDICTED: Bos taurus similar to round spermatid basic protein 1-like, transcript variant 1 (LOC541150), mRNA Length = 3037 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ggtgcccgccgccgccgcct 288 |||||||||||||||||||| Sbjct: 435 ggtgcccgccgccgccgcct 454
>ref|XM_424351.1| PREDICTED: Gallus gallus similar to ADP-ribosylation-like factor homolog ARL6 (LOC426735), partial mRNA Length = 667 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cccgccgccgccgcctgcgc 292 |||||||||||||||||||| Sbjct: 36 cccgccgccgccgcctgcgc 17
>ref|XM_868049.1| PREDICTED: Bos taurus similar to dual specificity phosphatase and pro isomerase domain containing 1 (LOC616082), mRNA Length = 2210 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ggaggagggggaggctgagg 428 |||||||||||||||||||| Sbjct: 1218 ggaggagggggaggctgagg 1237
>ref|XM_865738.1| PREDICTED: Bos taurus similar to valosin containing protein (p97)/p47 complex interacting protein 1, transcript variant 2 (LOC539643), mRNA Length = 5552 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||| |||||||| Sbjct: 263 ccgccgccgccgcctccgctgccg 286
>ref|XM_588521.2| PREDICTED: Bos taurus similar to valosin containing protein (p97)/p47 complex interacting protein 1, transcript variant 1 (LOC539643), mRNA Length = 5416 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||| |||||||| Sbjct: 243 ccgccgccgccgcctccgctgccg 266
>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11, complete sequence Length = 112796 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 32324 ccgccgccgccgccggcgctgccg 32301
>ref|NM_006888.3| Homo sapiens calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA Length = 4201 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 75 ccgccgccgccgcctgcgccgccg 52
>gb|AY623115.1| Homo sapiens TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa (TAF4) gene, complete cds Length = 94949 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 2412 cggtgcccgccgccgccgcc 2431
>ref|XM_544109.2| PREDICTED: Canis familiaris similar to valosin containing protein (p97)/p47 complex interacting protein 1 (LOC486980), mRNA Length = 5229 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||| |||||||| Sbjct: 298 ccgccgccgccgcctccgctgccg 321
>ref|XM_541785.2| PREDICTED: Canis familiaris similar to Oxytocin receptor (OT-R) (LOC484670), mRNA Length = 1275 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgccgtcggccacctcgcgc 67 |||||||||||||||||||| Sbjct: 670 cgccgtcggccacctcgcgc 651
>gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complete sequence Length = 215584 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ggaggagggggaggctgagg 428 |||||||||||||||||||| Sbjct: 74043 ggaggagggggaggctgagg 74062
>gb|BC047523.1| Homo sapiens calmodulin 1 (phosphorylase kinase, delta), mRNA (cDNA clone MGC:26695 IMAGE:4819353), complete cds Length = 3718 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 75 ccgccgccgccgcctgcgccgccg 52
>gb|BC011834.2| Homo sapiens calmodulin 1 (phosphorylase kinase, delta), mRNA (cDNA clone MGC:20018 IMAGE:3942245), complete cds Length = 1562 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 75 ccgccgccgccgcctgcgccgccg 52
>gb|BC000454.2| Homo sapiens calmodulin 1 (phosphorylase kinase, delta), mRNA (cDNA clone MGC:8460 IMAGE:2821489), complete cds Length = 1049 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 55 ccgccgccgccgcctgcgccgccg 32
>gb|BC008597.1| Homo sapiens calmodulin 1 (phosphorylase kinase, delta), mRNA (cDNA clone MGC:17489 IMAGE:3452971), complete cds Length = 1037 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 55 ccgccgccgccgcctgcgccgccg 32
>emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chromosome 1 Contains the 5' end of the IL22RA1 gene for interleukin 22 receptor alpha 1, the IL28RA gene for interleukin 28 receptor alpha (interferon, lambda receptor), a novel gene and the 3' end of a novel gene, complete sequence Length = 164684 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 agggggaggctgagggacgg 433 |||||||||||||||||||| Sbjct: 159940 agggggaggctgagggacgg 159959
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cgtcgcgcgcgagtccgcgt 226 |||||||||||||||||||| Sbjct: 4706048 cgtcgcgcgcgagtccgcgt 4706029
>emb|AL159168.15| Human DNA sequence from clone RP11-401H23 on chromosome 9 Contains a the 3' end of a novel gene (KIAA0368), the gene for KIAA1962 protein similar to zinc finger protein HIT-10 and a CpG island, complete sequence Length = 129010 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 55451 gcccgccgccgccgcctgcg 55470
>emb|AL137077.31| Human DNA sequence from clone RP11-11M20 on chromosome 20 Contains the 5' end of the TAF4 gene for TAF4 RNA polymerase II (TATA box binding protein (TBP)-associated factor, 135 kDa), an RPL17 (ribosomal protein L17) pseudogene, the C20orf40 gene for a novel protein similar to Pleurodeles waltlii RAP55 protein and two CpG islands, complete sequence Length = 126712 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 57308 cggtgcccgccgccgccgcc 57289
>emb|AL031596.7|HS745C22 Human DNA sequence from clone RP4-745C22 on chromosome 22q11.22-12.3, complete sequence Length = 13949 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 906 ccgccgccgccgcctgcgccgccg 929
>emb|AL031737.2|HS8B22 Human DNA sequence from clone RP1-8B22 on chromosome 1p35.1-36.21 Contains a dynein, cytoplasmic light chain 1 (DNCL1) pseudogene, complete sequence Length = 133760 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ggaggagggggaggctgagg 428 |||||||||||||||||||| Sbjct: 80736 ggaggagggggaggctgagg 80755
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 cccgccgccgccgcctgcgc 292 |||||||||||||||||||| Sbjct: 11969 cccgccgccgccgcctgcgc 11988
>emb|X71135.1|HSSOX3 H.sapiens sox3 gene Length = 2509 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcgctgc 295 |||||||||||||||| ||||||| Sbjct: 1307 gcccgccgccgccgcccgcgctgc 1330
>emb|CR861371.1| Pongo pygmaeus mRNA; cDNA DKFZp459B012 (from clone DKFZp459B012) Length = 4208 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 75 ccgccgccgccgcctgcgccgccg 52
>emb|CR861201.1| Pongo pygmaeus mRNA; cDNA DKFZp459F053 (from clone DKFZp459F053) Length = 4207 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 75 ccgccgccgccgcctgcgccgccg 52
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ctggtggcgccgtcgcgggc 264 |||||||||||||||||||| Sbjct: 13348 ctggtggcgccgtcgcgggc 13329
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cggcgtcgttggggtcgcgg 410 |||||||||||||||||||| Sbjct: 67363 cggcgtcgttggggtcgcgg 67344
>emb|AJ720205.1| Gallus gallus mRNA for hypothetical protein, clone 12j12 Length = 3847 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 104 gcccgccgccgccgcctgcg 123
>emb|AJ488163.1|CCA488163 Cebus capucinus TWIST gene for twist transcription factor Length = 624 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 275 ccgccgccgccgcccgcgctgccg 252
>emb|AJ488160.1|HCO488160 Hylobates concolor TWIST gene for twist transcription factor Length = 615 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 275 ccgccgccgccgcccgcgctgccg 252
>emb|AJ720909.1| Gallus gallus mRNA for hypothetical protein, clone 29k9 Length = 1271 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cccgccgccgccgcctgcgc 292 |||||||||||||||||||| Sbjct: 37 cccgccgccgccgcctgcgc 18
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 cccgccgccgccgcctgcgc 292 |||||||||||||||||||| Sbjct: 37810 cccgccgccgccgcctgcgc 37829
>gb|U16851.1|HSCALMI1 Homo sapiens calmodulin-I (CALM1) mRNA, 5'UTR, partial sequence Length = 106 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 66 ccgccgccgccgcctgcgccgccg 43
>gb|U11886.1|HSCALMG1 Human calmodulin (CALM1) gene, exon 1 Length = 1776 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 1306 ccgccgccgccgcctgcgccgccg 1283
>gb|AC154564.3| Mus musculus BAC clone RP23-402A16 from chromosome 16, complete sequence Length = 214128 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 409 ggaggagggggaggctgagggacggctc 436 |||||||| |||||||||||||| |||| Sbjct: 61120 ggaggaggaggaggctgagggacagctc 61093
>ref|NM_001006529.1| Gallus gallus plakophilin 4 (PKP4), mRNA Length = 3847 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 104 gcccgccgccgccgcctgcg 123
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tgcccgccgccgccgcctgc 290 |||||||||||||||||||| Sbjct: 7248 tgcccgccgccgccgcctgc 7229
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0047G15, from chromosome 10, complete sequence Length = 166474 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 36007 cggtgcccgccgccgccgcc 35988
>emb|CR626701.1| full-length cDNA clone CS0DI018YL01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1464 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 41 ccgccgccgccgcctgcgccgccg 18
>ref|NM_001009752.1| Ovis aries endometrial oxytocin receptor (OTR), mRNA Length = 2189 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgccgtcggccacctcgcgc 67 |||||||||||||||||||| Sbjct: 550 cgccgtcggccacctcgcgc 531
>ref|NM_003185.2| Homo sapiens TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa (TAF4), mRNA Length = 4641 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 416 cggtgcccgccgccgccgcc 435
>emb|CR619428.1| full-length cDNA clone CS0DI002YM07 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1477 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 54 ccgccgccgccgcctgcgccgccg 31
>emb|CR618763.1| full-length cDNA clone CS0CAP008YG13 of Thymus of Homo sapiens (human) Length = 724 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 64 ccgccgccgccgcctgcgccgccg 41
>emb|CR604747.1| full-length cDNA clone CS0DH001YK23 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1477 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 54 ccgccgccgccgcctgcgccgccg 31
>emb|CR595745.1| full-length cDNA clone CS0DJ008YB06 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 822 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 52 ccgccgccgccgcctgcgccgccg 29
>emb|CR592381.1| full-length cDNA clone CS0DA001YM08 of Neuroblastoma of Homo sapiens (human) Length = 1420 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 64 ccgccgccgccgcctgcgccgccg 41
>emb|CR591035.1| full-length cDNA clone CS0DI039YC21 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1464 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 54 ccgccgccgccgcctgcgccgccg 31
>emb|CR590380.1| full-length cDNA clone CS0DE001YK06 of Placenta of Homo sapiens (human) Length = 1498 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 56 ccgccgccgccgcctgcgccgccg 33
>dbj|AB220420.1| Macaca fascicularis mRNA, clone QccE-14817: similar to Homo sapiens calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA, NM_006888.2 Length = 1837 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 72 ccgccgccgccgcctgcgccgccg 49
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 23277 cggtgcccgccgccgccgcc 23296
>gb|AC012082.6| Homo sapiens chr3 BAC RP11-420O16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ggaggagggggaggctgagg 428 |||||||||||||||||||| Sbjct: 57940 ggaggagggggaggctgagg 57959
>gb|AF315821.1|AF315821 Monosiga brevicollis DNA-dependent RNA polymerase II largest subunit RPB1 (RPB1) gene, partial cds Length = 6008 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 125 ccacctcgccccggccttctccggcctcgcct 156 ||||||||||| || |||||||||||||||| Sbjct: 5078 ccacctcgcccgggttttctccggcctcgcct 5109
>gb|DP000042.1| Lemur catta target 106 genomic scaffold Length = 452647 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 tgggcagctcctgctcctgg 248 |||||||||||||||||||| Sbjct: 1833 tgggcagctcctgctcctgg 1852
>gb|S79498.1| alpha-globin loci: alpha 2 globin, alpha 1 globin [Macaca mulatta=rhesus monkey, Genomic, 4655 nt] Length = 4655 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gcccgccgccgccgcctgcgctgc 295 |||||| ||||||||||||||||| Sbjct: 3314 gcccgcagccgccgcctgcgctgc 3291
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cggcgtcgttggggtcgcgg 410 |||||||||||||||||||| Sbjct: 31085282 cggcgtcgttggggtcgcgg 31085263
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 10285606 gcccgccgccgccgcctgcg 10285625
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 21348264 cggtgcccgccgccgccgcc 21348283 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 5030706 cggtgcccgccgccgccgcc 5030687
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 27300963 cggtgcccgccgccgccgcc 27300982
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 28713611 ccgccgccgccgccggcgctgccg 28713588 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 cccgccgccgccgcctgcgc 292 |||||||||||||||||||| Sbjct: 27005387 cccgccgccgccgcctgcgc 27005406
>gb|AF344638.1|AF344638 Ovis aries endometrial oxytocin receptor mRNA, complete cds Length = 2189 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgccgtcggccacctcgcgc 67 |||||||||||||||||||| Sbjct: 550 cgccgtcggccacctcgcgc 531
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 34978 cggtgcccgccgccgccgcc 34959
>ref|NM_214027.1| Sus scrofa oxytocin receptor (OXTR), mRNA Length = 1863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgccgtcggccacctcgcgc 67 |||||||||||||||||||| Sbjct: 557 cgccgtcggccacctcgcgc 538
>dbj|AB194902.1| Chlamydomonas reinhardtii LSP1 gene for putative signal transducer for phototaxis, complete cds Length = 6480 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 gtgcccgccgccgccgcctgcgctgccg 297 |||| |||||| |||||||||||||||| Sbjct: 4710 gtgcgcgccgcggccgcctgcgctgccg 4737
>gb|AC018456.18| Homo sapiens 3 BAC RP11-172G5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ggaggagggggaggctgagg 428 |||||||||||||||||||| Sbjct: 14281 ggaggagggggaggctgagg 14300
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gccgccgcctgcgctgccgt 298 |||||||||||||||||||| Sbjct: 4141183 gccgccgcctgcgctgccgt 4141164
>dbj|AP005928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0031F23 Length = 128090 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 27545 ccgccgccgccgcctgcgccgccg 27522
>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15 Length = 123083 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 gctccgccgtcggccacctc 63 |||||||||||||||||||| Sbjct: 59590 gctccgccgtcggccacctc 59571
>dbj|AP004802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0640D01 Length = 164996 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 123356 ccgccgccgccgcctgcgccgccg 123333
>emb|AJ488165.1|CJA488165 Callithrix jacchus TWIST gene for twist transcription factor Length = 612 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 278 ccgccgccgccgcccgcgctgccg 255
>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0623F08 Length = 154540 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 124166 cggtgcccgccgccgccgcc 124185
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 2490 cggtgcccgccgccgccgcc 2509
>dbj|AK121240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097I24, full insert sequence Length = 2527 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 1234 cggtgcccgccgccgccgcc 1215
>dbj|AK110257.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-A09, full insert sequence Length = 1164 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 415 ccgccgccgccgccggcgctgccg 438
>dbj|AK108181.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A12, full insert sequence Length = 1297 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 |||||||||||||| ||||||||| Sbjct: 628 ccgccgccgccgccggcgctgccg 605
>dbj|AK107907.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G02, full insert sequence Length = 751 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 270 gtgcccgccgccgccgcctgcgctgccg 297 |||||||||||||||||| |||||||| Sbjct: 180 gtgcccgccgccgccgccgccgctgccg 207
>dbj|AK106781.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H06, full insert sequence Length = 866 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 156 cggtgcccgccgccgccgcc 137
>dbj|AK102429.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H07, full insert sequence Length = 3398 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 127 gcccgccgccgccgcctgcg 108
>emb|AL512791.3|CNS07EFF Human chromosome 14 DNA sequence BAC R-471B22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178834 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 64186 ccgccgccgccgcctgcgccgccg 64163
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 gaaagggacgtcgcgcgcgagtcc 222 |||| ||||||||||||||||||| Sbjct: 107817 gaaacggacgtcgcgcgcgagtcc 107794
>gb|AC006536.2|AC006536 Homo sapiens chromosome 14 clone BAC257P13 map 14q31, complete sequence Length = 185402 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgctgccg 297 ||||||||||||||||||| |||| Sbjct: 23533 ccgccgccgccgcctgcgccgccg 23510
>gb|AF071432.1|AF071432 Lampetra fluviatilis neurotrophin precursor (NT1) gene, complete cds Length = 1076 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 812 cggtgcccgccgccgccgcc 793
>dbj|AB074880.1| Chlamydomonas reinhardtii PTB1 mRNA for putative Pi-transporter homologue B1, complete cds Length = 6032 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ccgccgccgccgcctgcgct 293 |||||||||||||||||||| Sbjct: 3918 ccgccgccgccgcctgcgct 3899
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 ccgccgtcggccacctcgcgcccg 70 |||||||||||| ||||||||||| Sbjct: 140103 ccgccgtcggccgcctcgcgcccg 140126
>gb|U75308.1|HSU75308 Human TBP-associated factor (hTAFII130) mRNA, partial cds Length = 4233 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 104 cggtgcccgccgccgccgcc 123
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 21359527 cggtgcccgccgccgccgcc 21359546 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 5031493 cggtgcccgccgccgccgcc 5031474
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 10285488 gcccgccgccgccgcctgcg 10285507
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcccgccgccgccgcctgcg 291 |||||||||||||||||||| Sbjct: 48525 gcccgccgccgccgcctgcg 48544
>gb|AC131766.4| Mus musculus BAC clone RP24-240O7 from 6, complete sequence Length = 152512 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ggaggagggggaggctgagg 428 |||||||||||||||||||| Sbjct: 20242 ggaggagggggaggctgagg 20223
>emb|AL662780.20| Mouse DNA sequence from clone RP23-375M9 on chromosome 11, complete sequence Length = 203324 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggcagctcctgctcctggtg 250 |||||||||||||||||||| Sbjct: 154771 ggcagctcctgctcctggtg 154752
>emb|X05289.1|PAA1GL P.anubis alpha-1 globin gene Length = 880 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gcccgccgccgccgcctgcgctgc 295 |||||| ||||||||||||||||| Sbjct: 623 gcccgcagccgccgcctgcgctgc 600
>emb|X87986.1|OSOXYTREC Ovis sp. mRNA for oxytocin receptor Length = 1483 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgccgtcggccacctcgcgc 67 |||||||||||||||||||| Sbjct: 554 cgccgtcggccacctcgcgc 535
>emb|X71796.1|SSOXTRA S.scrofa mRNA for oxytocin receptor Length = 1863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgccgtcggccacctcgcgc 67 |||||||||||||||||||| Sbjct: 557 cgccgtcggccacctcgcgc 538
>emb|Y11354.1|HSTAFII13 H.sapiens mRNA for TAFII135 Length = 3252 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cggtgcccgccgccgccgcc 287 |||||||||||||||||||| Sbjct: 416 cggtgcccgccgccgccgcc 435
>gb|J04495.1|MACHBA Rhesus monkey alpha-globin gene, complete cds Length = 855 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gcccgccgccgccgcctgcgctgc 295 |||||| ||||||||||||||||| Sbjct: 584 gcccgcagccgccgcctgcgctgc 561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,824,431 Number of Sequences: 3902068 Number of extensions: 4824431 Number of successful extensions: 242601 Number of sequences better than 10.0: 143 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 234710 Number of HSP's gapped (non-prelim): 7873 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
