ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40b08 |
|---|---|
| Clone Library Name | barley_pub |
>PQQF_PSEAE (Q9I2D2) Coenzyme PQQ synthesis protein F (EC 3.4.99.-)| (Pyrroloquinoline quinone biosynthesis protein F) Length = 775 Score = 33.9 bits (76), Expect = 0.19 Identities = 21/52 (40%), Positives = 30/52 (57%) Frame = -2 Query: 373 PAPAEDVQVAALEVGVALIHEPAPRRQVRDRHALGVARGVELQRDVGVRPGL 218 P P ++V + A +A +HEPA +R++RD LG A R+VG R GL Sbjct: 615 PLPTQEVPMEAAWRLLARLHEPAFQRRLRDELQLGYALFCGF-REVGARRGL 665
>LOX5_HUMAN (P09917) Arachidonate 5-lipoxygenase (EC 1.13.11.34)| (5-lipoxygenase) (5-LO) Length = 673 Score = 33.5 bits (75), Expect = 0.25 Identities = 22/59 (37%), Positives = 27/59 (45%) Frame = +2 Query: 185 YTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPSWGGLMYQGHSYFERGNLDIF 361 YTV V TGS W AGTD I L L + + D P + FERG +D + Sbjct: 3 YTVTVATGSQWFAGTDDYIYLSLVGSAGCSEKHLLDKPFYND--------FERGAVDSY 53
>ISPE_SALTY (P30753) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 283 Score = 32.7 bits (73), Expect = 0.43 Identities = 27/89 (30%), Positives = 40/89 (44%) Frame = +2 Query: 110 GRDLPTQIKLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAIS 289 G D+ + +L GGG GG S TV V +W+ G + EL T G G + Sbjct: 89 GADISIEKRLPMGGGLGGGSSNAA--TVLVALNHLWQCGLSID---ELATLGLTLG---A 140 Query: 290 DLPSWGGLMYQGHSYFERGNLDIFSGRGP 376 D+P + +GH+ F G +I + P Sbjct: 141 DVP----VFVRGHAAFAEGVGEILTPVNP 165
>ISPE_SALTI (Q8Z699) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 283 Score = 32.7 bits (73), Expect = 0.43 Identities = 27/89 (30%), Positives = 40/89 (44%) Frame = +2 Query: 110 GRDLPTQIKLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAIS 289 G D+ + +L GGG GG S TV V +W+ G + EL T G G + Sbjct: 89 GADISIEKRLPMGGGLGGGSSNAA--TVLVALNHLWQCGLSID---ELATLGLTLG---A 140 Query: 290 DLPSWGGLMYQGHSYFERGNLDIFSGRGP 376 D+P + +GH+ F G +I + P Sbjct: 141 DVP----VFVRGHAAFAEGVGEILTPVNP 165
>ISPE_SALCH (Q57NN2) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 283 Score = 32.7 bits (73), Expect = 0.43 Identities = 27/89 (30%), Positives = 40/89 (44%) Frame = +2 Query: 110 GRDLPTQIKLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAIS 289 G D+ + +L GGG GG S TV V +W+ G + EL T G G + Sbjct: 89 GADISIEKRLPMGGGLGGGSSNAA--TVLVALNHLWQCGLSID---ELATLGLTLG---A 140 Query: 290 DLPSWGGLMYQGHSYFERGNLDIFSGRGP 376 D+P + +GH+ F G +I + P Sbjct: 141 DVP----VFVRGHAAFAEGVGEILTPVNP 165
>ISPE_SALPA (Q5PCR2) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 282 Score = 32.7 bits (73), Expect = 0.43 Identities = 27/89 (30%), Positives = 40/89 (44%) Frame = +2 Query: 110 GRDLPTQIKLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAIS 289 G D+ + +L GGG GG S TV V +W+ G + EL T G G + Sbjct: 88 GADISIEKRLPMGGGLGGGSSNAA--TVLVALNHLWQCGLSID---ELATLGLTLG---A 139 Query: 290 DLPSWGGLMYQGHSYFERGNLDIFSGRGP 376 D+P + +GH+ F G +I + P Sbjct: 140 DVP----VFVRGHAAFAEGVGEILTPVNP 164
>PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant polycystic kidney| disease protein 1) Length = 4303 Score = 32.3 bits (72), Expect = 0.56 Identities = 24/87 (27%), Positives = 36/87 (41%) Frame = +2 Query: 185 YTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPSWGGLMYQGHSYFERGNLDIFS 364 Y + V+TG +GT A++ + LY + G D G F R +LDIF Sbjct: 3120 YEILVKTGWGRGSGTTAHVGIMLYGVDSRSGHRHLD----------GDRAFHRNSLDIFR 3169 Query: 365 GRGPCMARAPCRMRVSSDGTGAHHGWY 445 P + ++RV D G W+ Sbjct: 3170 IATPHSLGSVWKIRVWHDNKGLSPAWF 3196
>LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34)| (5-lipoxygenase) (5-LO) Length = 672 Score = 30.4 bits (67), Expect = 2.1 Identities = 21/59 (35%), Positives = 26/59 (44%) Frame = +2 Query: 185 YTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPSWGGLMYQGHSYFERGNLDIF 361 YTV V TGS W AGTD I L L + + D + FERG +D + Sbjct: 3 YTVTVATGSQWFAGTDDYIYLSLIGSAGCSEKHLLDKAFYND--------FERGAVDSY 53
>LOX5_MOUSE (P48999) Arachidonate 5-lipoxygenase (EC 1.13.11.34)| (5-lipoxygenase) (5-LO) Length = 673 Score = 30.4 bits (67), Expect = 2.1 Identities = 21/59 (35%), Positives = 26/59 (44%) Frame = +2 Query: 185 YTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPSWGGLMYQGHSYFERGNLDIF 361 YTV V TGS W AGTD I L L + + D + FERG +D + Sbjct: 3 YTVTVATGSQWFAGTDDYIYLSLIGSAGCSEKHLLDKAFYND--------FERGAVDSY 53
>PKDRE_MOUSE (Q9Z0T6) Polycystic kidney disease and receptor for egg jelly-related| protein precursor (PKD and REJ homolog) Length = 2126 Score = 30.0 bits (66), Expect = 2.8 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Frame = +2 Query: 185 YTVYVRTGSIWKAGTDANITLELY-TAGNAEGVAISDLPSWGGLMYQGHSYFE---RGNL 352 Y V + TGS W +GT AN+ ++L T G ++ +S H YF+ RG++ Sbjct: 1116 YLVTIFTGSRWGSGTRANVFIQLMGTEGTSDVHCLS------------HPYFKTLYRGSI 1163 Query: 353 DIFSGRGPCMARAPCRMRVSSDGTGAHHGWY 445 + F +RV D +G WY Sbjct: 1164 NTFLLTTKNDLGDIHSIRVWHDNSGEAPSWY 1194
>LOX5_RAT (P12527) Arachidonate 5-lipoxygenase (EC 1.13.11.34)| (5-lipoxygenase) (5-LO) Length = 672 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = +2 Query: 185 YTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPSWGGLMYQGHSYFERGNLDIF 361 YTV V TGS W AGTD I L L + + D + FERG D + Sbjct: 3 YTVTVATGSQWFAGTDDYIYLSLIGSAGCSEKHLLDKAFYND--------FERGGRDSY 53
>ATG9_EMENI (Q5B6U6) Autophagy-related protein 9| Length = 820 Score = 30.0 bits (66), Expect = 2.8 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = -2 Query: 406 PHAAGRSGHARPAPAEDVQVAALEVGVALIHEPAPRRQVRDRH 278 PH R G PAP + + E +A PAPRR+ H Sbjct: 710 PHHRQRLGRPPPAPVSESIIDDNEPSIAAARRPAPRRKSGQLH 752
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 30.0 bits (66), Expect = 2.8 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 3/75 (4%) Frame = +1 Query: 223 RDGRQHHAGALHRGQRRGRGDLGPAVVGRAHVSGPL--LLRARQPGHLQ-RARAVHGQSA 393 R R HH H RG G + P V R GP+ + AR P RARA Sbjct: 2214 RKHRPHHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVRPARAPALAHARARARAPARL 2273 Query: 394 LPHEGVVRRHRRAPR 438 LP + R R PR Sbjct: 2274 LPELRLRRARRPRPR 2288
>SYD_MYCPN (P75068) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 557 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Frame = +2 Query: 113 RDLPTQI-KLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAIS 289 +D P Q L GG VGG +Y V ++ K D ++LE Y+ + Sbjct: 298 QDSPNQFTNLINAGGIVGGIQLPNLYLDEVSFKALRKLAKDNGVSLEFYSDKASSLKQPL 357 Query: 290 DLPSWGGLMYQGH 328 DLP G ++ H Sbjct: 358 DLPLAGTILLVAH 370
>HEM1_AGABI (Q92403) 5-aminolevulinate synthase, mitochondrial precursor (EC| 2.3.1.37) (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) Length = 621 Score = 28.9 bits (63), Expect = 6.2 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Frame = -2 Query: 400 AAGRSGHARPAPAEDVQVAALEVGVALIHEPAPR------RQVRDRHALGVAR 260 A GR+G P A+DVQ + + L++ APR + V D A+ +AR Sbjct: 523 AGGRAGVGIPGAADDVQPIWTDEQIGLLNGTAPRSLRNAEKSVVDMRAVTIAR 575
>MUTS_AZOVI (P27345) DNA mismatch repair protein mutS| Length = 855 Score = 28.9 bits (63), Expect = 6.2 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = +1 Query: 289 GPAVVGRAHVSGPLLLRARQPGHLQRARAVHGQSALPHEGVVR 417 G AV A V GP++ RAR+ HL R A ++LPHE +R Sbjct: 770 GLAVAQLAGVPGPVISRARE--HLARLEA----TSLPHEAPLR 806
>BMP8A_MOUSE (P34821) Bone morphogenetic protein 8A precursor (BMP-8A)| (Osteogenic protein 2) (OP-2) Length = 399 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = -2 Query: 376 RPAPAEDVQVAALEVGVALIHEPAPRRQVRDRHALGVARGVELQRDVGVRPGLPDRPRP 200 RP P + +A +G H P P R LG ++QR++ GLP RPRP Sbjct: 4 RPGPLWLLGLALCALGGG--HGPRPPHTCPQRR-LGARERRDMQREILAVLGLPGRPRP 59
>TAF10_HUMAN (Q12962) Transcription initiation factor TFIID subunit 10| (Transcription initiation factor TFIID 30 kDa subunit) (TAF(II)30) (TAFII-30) (TAFII30) (STAF28) Length = 218 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +1 Query: 289 GPAVVGRAHVSGPLLLRARQPGHLQRARAVHGQSALPHEGVV 414 GP A +GPL RA +P + A V A P EG + Sbjct: 51 GPGAGAAAGGTGPLAARAGEPAERRGAAPVSAGGAAPPEGAI 92
>KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppressor of ras)| (mKSR1) (Hb protein) Length = 873 Score = 28.5 bits (62), Expect = 8.1 Identities = 27/94 (28%), Positives = 35/94 (37%) Frame = -3 Query: 426 PVPSDDTLMRQGALAMHGPRPLKMSRLPRSK*EWP*YMSPPHDGRSEIXXXXXXXXXXXX 247 P+ +L R GA + GPR + +S LP S P G SE Sbjct: 194 PMDMLSSLGRAGA-STQGPRSISVSALPAS--------DSPVPGLSEGLSDSCIPLHTSG 244 Query: 246 XXXXXXXXAFQIDPVRTYTVYTHSWLSPPTAPPP 145 +F I P T + H+ L PP PPP Sbjct: 245 RLTPRALHSF-ITPPTTPQLRRHAKLKPPRTPPP 277
>HSCA_ECOLI (P0A6Z1) Chaperone protein hscA (Hsc66)| Length = 616 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +2 Query: 128 QIKLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPS 301 ++ T G A+GGD + + Y+R + +D + EL A A +A+SD S Sbjct: 226 EVLATGGDSALGGDDFDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADS 283
>HSCA_ECOL6 (Q8FF44) Chaperone protein hscA (Hsc66)| Length = 616 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +2 Query: 128 QIKLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPS 301 ++ T G A+GGD + + Y+R + +D + EL A A +A+SD S Sbjct: 226 EVLATGGDSALGGDDFDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADS 283
>HSCA_ECO57 (P0A6Z2) Chaperone protein hscA (Hsc66)| Length = 616 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +2 Query: 128 QIKLTEGGGAVGGDSQECVYTVYVRTGSIWKAGTDANITLELYTAGNAEGVAISDLPS 301 ++ T G A+GGD + + Y+R + +D + EL A A +A+SD S Sbjct: 226 EVLATGGDSALGGDDFDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADS 283
>CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 374 Score = 28.5 bits (62), Expect = 8.1 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = -2 Query: 397 AGRSGHARPAPAEDVQVAALEVGVALIHEPAPRRQVRDRHALGVARG--VELQR 242 A S A PAPA A A H PAP+R+ A+G + G V LQR Sbjct: 155 APASSFASPAPARPAATARAAAPAAS-HSPAPKRKPYKLVAIGTSTGGPVALQR 207
>E41L3_HUMAN (Q9Y2J2) Band 4.1-like protein 3 (4.1B) (Differentially expressed| in adenocarcinoma of the lung protein 1) (DAL-1) Length = 1087 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -2 Query: 400 AAGRSGHARPAPAEDVQVAALE-VGVALIHEPAPRRQVRDRHALGVARGVE 251 A GR+G P P ++ Q ALE A H RR+V D+ AR + Sbjct: 25 AQGRAGAPVPEPPKEEQQQALEQFAAAAAHSTPVRREVTDKEQEFAARAAK 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,065,411 Number of Sequences: 219361 Number of extensions: 893964 Number of successful extensions: 3448 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3326 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3441 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
