ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast40a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge... 32 0.52
2IE18_PRVIF (P11675) Immediate-early protein IE180 29 3.4
3PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit ... 28 5.8
4SFTPA_CANFA (P06908) Pulmonary surfactant-associated protein A p... 28 7.5
5TXLNA_MOUSE (Q6PAM1) Alpha-taxilin 27 9.9
6TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding prote... 27 9.9

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 6   PAKRPQQQKSITRTPLAAHPPLHPCVP 86
           P++ P + +S++R P  + PPLHPC P
Sbjct: 749 PSRPPSRPQSVSRPP--SEPPLHPCPP 773



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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 98  PRRCRRRWAAPSSMVSGAPRSSRGPGCSGAPSGW 199
           P R     A+P+S  SG+  SS  PG S AP  W
Sbjct: 165 PGRSSPSAASPASSSSGSSGSSGSPGPSAAPRRW 198



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>PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase|
           regulatory subunit 5) (PI3-kinase p101 subunit)
           (PtdIns-3-kinase p101) (p101-PI3K)
           (Phosphatidylinositol-4,5-bisphosphate 3-kinase
           regulatory subunit) (PtdIns-3-kinase regulato
          Length = 877

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 195 PDGAPEHPGPRELRGAP 145
           P  AP HPGP EL  AP
Sbjct: 581 PTDAPRHPGPAELGAAP 597



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>SFTPA_CANFA (P06908) Pulmonary surfactant-associated protein A precursor (SP-A)|
           (PSP-A) (PSAP)
          Length = 248

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 195 PDGAPEHPGPRELRGAP 145
           P G P HPGP  + GAP
Sbjct: 63  PGGMPGHPGPNGMTGAP 79



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>TXLNA_MOUSE (Q6PAM1) Alpha-taxilin|
          Length = 554

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 125 APSSMVSGAPRSSRGPGCSGAPS 193
           +P +  + +PR++  P CSGAPS
Sbjct: 515 SPGAQPASSPRATDAPCCSGAPS 537



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>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)|
           (Fragment)
          Length = 290

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 3   DPAKRPQQQKSITRTPLAAHPP 68
           DP K P+ + SI R P+A  PP
Sbjct: 185 DPPKPPKVEASIVRPPVATSPP 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.127    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,818,753
Number of Sequences: 219361
Number of extensions: 409536
Number of successful extensions: 1423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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