ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast40a05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA sequence Length = 2056 Score = 248 bits (125), Expect = 5e-63 Identities = 159/169 (94%), Gaps = 1/169 (0%) Strand = Plus / Plus Query: 1 cggccagatccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagct 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 cggccagttccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagct 297 Query: 61 caagaacgggctgcacaccgagggggtggtcatccactggcacggcgtcagacagattgg 120 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 298 caagaacgggctgcacaccgagggcgtcgtcatccactggcacggcgtcagacagattgg 357 Query: 121 aacaccgtgggcggatggcacggcggcgatct-ccaatgcgccatcaac 168 ||| || |||||||| |||||||| || |||| ||| |||||||||||| Sbjct: 358 aacgccatgggcggacggcacggccgccatctcccagtgcgccatcaac 406
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 147 bits (74), Expect = 1e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 2 ggccagatccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 61 |||||| ||||||| || |||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 21545700 ggccagttccccgggccgaccatccgcgccaaggccggcgacaccatcgtcgtccacctc 21545759 Query: 62 aagaacgggctgcacaccgagggggtggtcatccactggcacggcgtcagacag 115 |||||||| |||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 21545760 aagaacggcctgcacaccgagggcgtcgtcatccactggcacggcatcagacag 21545813 Score = 63.9 bits (32), Expect = 1e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 72 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 115 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 21603707 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 21603750 Score = 54.0 bits (27), Expect = 1e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 111 gacagattggaacaccgtgggcggatggcacggcggcgatct-ccaatgcgccatcaac 168 ||||||| || ||||| ||||||||||||||||| |||||| ||| |||||||||||| Sbjct: 21546070 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaac 21546128
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 147 bits (74), Expect = 1e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 2 ggccagatccccggccccaccatccgggccaaggccggcgacaccatcgtcgtcgagctc 61 |||||| ||||||| || |||||||| ||||||||||||||||||||||||||| | ||| Sbjct: 102884 ggccagttccccgggccgaccatccgcgccaaggccggcgacaccatcgtcgtccacctc 102943 Query: 62 aagaacgggctgcacaccgagggggtggtcatccactggcacggcgtcagacag 115 |||||||| |||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 102944 aagaacggcctgcacaccgagggcgtcgtcatccactggcacggcatcagacag 102997 Score = 63.9 bits (32), Expect = 1e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 72 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 115 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 160891 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 160934 Score = 54.0 bits (27), Expect = 1e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 111 gacagattggaacaccgtgggcggatggcacggcggcgatct-ccaatgcgccatcaac 168 ||||||| || ||||| ||||||||||||||||| |||||| ||| |||||||||||| Sbjct: 103254 gacagatcgggacaccatgggcggatggcacggcatcgatctcccagtgcgccatcaac 103312
>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full insert sequence Length = 2191 Score = 81.8 bits (41), Expect = 6e-13 Identities = 65/73 (89%) Strand = Plus / Plus Query: 72 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 131 ||||||||||||| || |||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 327 tgcacaccgagggcgtcgtcatccactggcacggcatcagacagtttggcacgccgtggg 386 Query: 132 cggatggcacggc 144 |||| || ||||| Sbjct: 387 cggacgggacggc 399
>dbj|AB004799.1| Oryza sativa mRNA for ascorbate oxidase, partial cds Length = 1245 Score = 75.8 bits (38), Expect = 4e-11 Identities = 64/73 (87%) Strand = Plus / Plus Query: 72 tgcacaccgagggggtggtcatccactggcacggcgtcagacagattggaacaccgtggg 131 ||||||||||||| || ||||||||||||||||| |||||||| |||| || ||||||| Sbjct: 266 tgcacaccgagggcgtcgtcatccactggcacggnatcagacagtttggtacgccgtggg 325 Query: 132 cggatggcacggc 144 |||| || ||||| Sbjct: 326 cggacgggacggc 338
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 63.9 bits (32), Expect = 1e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 72 tgcacaccgagggggtggtcatccactggcacggcgtcagacag 115 ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 2638 tgcacaccgagggcgtcgtcatccactggcacggcatcagacag 2681
>ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1731 Score = 50.1 bits (25), Expect = 0.002 Identities = 46/53 (86%) Strand = Plus / Plus Query: 91 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 143 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 240 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 292
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.002 Identities = 46/53 (86%) Strand = Plus / Minus Query: 91 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 143 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 11981068 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 11981016 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 gccggcgacaccatcgtcgtcg 56 |||||||||||||||||||||| Sbjct: 22000386 gccggcgacaccatcgtcgtcg 22000407
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 50.1 bits (25), Expect = 0.002 Identities = 46/53 (86%) Strand = Plus / Minus Query: 91 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcacgg 143 |||||||||||||||| || | ||||| || || ||||||||||| ||||||| Sbjct: 85548 catccactggcacggcatccggcagatcggcacgccgtgggcggacggcacgg 85496
>ref|NM_120146.3| Arabidopsis thaliana copper ion binding AT4G39830 mRNA, complete cds Length = 2082 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 gacaccatcgtcgtcgagctcaagaa 66 ||||||||||| |||||||||||||| Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
>gb|BT015885.1| Arabidopsis thaliana At4g39830 gene, complete cds Length = 1749 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 gacaccatcgtcgtcgagctcaagaa 66 ||||||||||| |||||||||||||| Sbjct: 220 gacaccatcgttgtcgagctcaagaa 245
>gb|BT015360.1| Arabidopsis thaliana At4g39830 gene, complete cds Length = 1915 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 gacaccatcgtcgtcgagctcaagaa 66 ||||||||||| |||||||||||||| Sbjct: 383 gacaccatcgttgtcgagctcaagaa 408
>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92 Length = 112067 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 gacaccatcgtcgtcgagctcaagaa 66 ||||||||||| |||||||||||||| Sbjct: 6341 gacaccatcgttgtcgagctcaagaa 6366
>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project) Length = 118267 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 gacaccatcgtcgtcgagctcaagaa 66 ||||||||||| |||||||||||||| Sbjct: 16908 gacaccatcgttgtcgagctcaagaa 16933
>emb|AL022605.3|ATT19P19 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project) Length = 88343 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 gacaccatcgtcgtcgagctcaagaa 66 ||||||||||| |||||||||||||| Sbjct: 82462 gacaccatcgttgtcgagctcaagaa 82487
>emb|BX827889.1|CNS0A49W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1943 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 41 gacaccatcgtcgtcgagctcaagaa 66 ||||||||||| |||||||||||||| Sbjct: 394 gacaccatcgttgtcgagctcaagaa 419
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 gccggcgacaccatcgtcgtcg 56 |||||||||||||||||||||| Sbjct: 42450 gccggcgacaccatcgtcgtcg 42471
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 44.1 bits (22), Expect = 0.13 Identities = 28/30 (93%) Strand = Plus / Plus Query: 24 tccgggccaaggccggcgacaccatcgtcg 53 |||||||||||||||||||| | ||||||| Sbjct: 23383 tccgggccaaggccggcgacgcgatcgtcg 23412
>gb|AY971876.1| Lycopersicon esculentum ascorbate oxidase (AO) mRNA, complete cds Length = 1984 Score = 42.1 bits (21), Expect = 0.52 Identities = 27/29 (93%) Strand = Plus / Plus Query: 110 agacagattggaacaccgtgggcggatgg 138 ||||||||||||||||| ||||| ||||| Sbjct: 352 agacagattggaacaccatgggctgatgg 380
>ref|XM_361698.1| Magnaporthe grisea 70-15 hypothetical protein (MG04172.4) partial mRNA Length = 2406 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gggcggatggcacggcggcga 149 ||||||||||||||||||||| Sbjct: 1320 gggcggatggcacggcggcga 1340
>gb|DQ470894.1| Leptosphaeria maculans isolate AFTOL-ID 277 RNA polymerase II subunit 2 (RPB2) gene, partial sequence Length = 1675 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 cgacaccatcgtcgtcgagct 60 ||||||||||||||||||||| Sbjct: 1325 cgacaccatcgtcgtcgagct 1305
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 caaggccggcgacaccatcgt 51 ||||||||||||||||||||| Sbjct: 2520182 caaggccggcgacaccatcgt 2520162
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 cgacaccatcgtcgtcgagctcaag 64 |||||||||||||||| |||||||| Sbjct: 2469684 cgacaccatcgtcgtcaagctcaag 2469660
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Minus Query: 29 gccaaggccggcgacaccatcgtcg 53 |||||||||||||||| |||||||| Sbjct: 4034665 gccaaggccggcgacagcatcgtcg 4034641 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cggcgacaccatcgtcgtc 55 ||||||||||||||||||| Sbjct: 4359629 cggcgacaccatcgtcgtc 4359611
>dbj|AB083032.1| Glycine max mRNA for syringolide-induced protein B13-1-1, partial cds Length = 1945 Score = 42.1 bits (21), Expect = 0.52 Identities = 30/33 (90%) Strand = Plus / Plus Query: 91 catccactggcacggcgtcagacagattggaac 123 ||||||||||||||| | |||||||||||||| Sbjct: 240 catccactggcacgggataagacagattggaac 272
>gb|AF107805.1|AF107805 Sporormiella minima DNA-dependent RNA polymerase II RPB140 (RPB2) gene, partial cds Length = 2811 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 cgacaccatcgtcgtcgagct 60 ||||||||||||||||||||| Sbjct: 2116 cgacaccatcgtcgtcgagct 2096
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccggcgacaccatcgtcgtc 55 |||||||||||||||||||| Sbjct: 237163 ccggcgacaccatcgtcgtc 237182
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aggccggcgacaccatcgtc 52 |||||||||||||||||||| Sbjct: 5835752 aggccggcgacaccatcgtc 5835771
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gccggcgacaccatcgtcgt 54 |||||||||||||||||||| Sbjct: 4837900 gccggcgacaccatcgtcgt 4837919
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatcg 50 |||||||||||||||||||| Sbjct: 122896 caaggccggcgacaccatcg 122915
>ref|NM_120532.2| Arabidopsis thaliana transferase, transferring glycosyl groups AT5G04500 mRNA, complete cds Length = 2638 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 atcgtcgtcgagctcaagaacgg 69 ||||||||| ||||||||||||| Sbjct: 1936 atcgtcgtcaagctcaagaacgg 1914
>ref|XM_530034.1| PREDICTED: Pan troglodytes LOC455969 (LOC455969), mRNA Length = 1484 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 gtcagacagattggaacac 125 ||||||||||||||||||| Sbjct: 683 gtcagacagattggaacac 665
>ref|XM_473586.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1737 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcgacaccatcgtcgtcga 57 ||||||||||||||||||| Sbjct: 1495 gcgacaccatcgtcgtcga 1477
>gb|DQ499809.1| Phaeosphaeria nodorum strain Sn27-1 RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|DQ499808.1| Phaeosphaeria nodorum strain S-74-20A RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|DQ499807.1| Phaeosphaeria nodorum strain Sn26-1 RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|DQ499806.1| Phaeosphaeria nodorum strain 9506 RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|DQ499805.1| Phaeosphaeria nodorum strain Sn48-1 RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|DQ499804.1| Phaeosphaeria nodorum strain Sn23-1 RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|DQ499802.1| Phaeosphaeria avenaria f. sp. triticae strain ATCC 26374 RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|DQ499801.1| Phaeosphaeria avenaria f. sp. triticae strain Sat24-1 RNA polymerase II second largest subunit (RPB2) gene, complete cds Length = 3841 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 2798 acaccatcgtcgtcgagct 2780
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 38.2 bits (19), Expect = 8.2 Identities = 31/35 (88%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatcgtcgtcgagctcaaga 65 |||||||| ||| |||||||| | ||||||||||| Sbjct: 3665632 caaggccgtcgagaccatcgtggccgagctcaaga 3665666
>ref|XM_658725.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6213.2), mRNA Length = 2328 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 tcgtcgagctcaagaacgg 69 ||||||||||||||||||| Sbjct: 77 tcgtcgagctcaagaacgg 95
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatc 49 ||||||||||||||||||| Sbjct: 1839198 caaggccggcgacaccatc 1839216
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatcgtcg 53 |||| |||||||||||||||||| Sbjct: 3961620 caagcccggcgacaccatcgtcg 3961642 Score = 38.2 bits (19), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 30 ccaaggccggcgacaccatcgtcgtcg 56 ||||||||||||||||| ||| ||||| Sbjct: 2305796 ccaaggccggcgacaccttcggcgtcg 2305770
>gb|AC147741.11| Medicago truncatula clone mth2-17b23, complete sequence Length = 110572 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 ccaaggccggcgacaccat 48 ||||||||||||||||||| Sbjct: 21552 ccaaggccggcgacaccat 21570
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 caaggccggcgacaccatc 49 ||||||||||||||||||| Sbjct: 2806183 caaggccggcgacaccatc 2806165
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 aggccggcgacaccatcgt 51 ||||||||||||||||||| Sbjct: 1889360 aggccggcgacaccatcgt 1889378
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatcgtcg 53 ||||||||||| ||||||||||| Sbjct: 2720202 caaggccggcgccaccatcgtcg 2720224
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 aaggccggcgacaccatcg 50 ||||||||||||||||||| Sbjct: 661937 aaggccggcgacaccatcg 661919
>emb|AL162875.1|ATT32M21 Arabidopsis thaliana DNA chromosome 5, BAC clone T32M21 (ESSA project) Length = 93045 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 atcgtcgtcgagctcaagaacgg 69 ||||||||| ||||||||||||| Sbjct: 42353 atcgtcgtcaagctcaagaacgg 42331
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 38.2 bits (19), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 30 ccaaggccggcgacaccatcgtcgtcg 56 ||||||||||||||||| ||| ||||| Sbjct: 2710532 ccaaggccggcgacaccttcggcgtcg 2710558
>gb|AE011980.1| Xanthomonas axonopodis pv. citri str. 306, section 358 of 469 of the complete genome Length = 11507 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatcgtcg 53 |||| |||||||||||||||||| Sbjct: 5717 caagcccggcgacaccatcgtcg 5739
>gb|AE011832.1| Xanthomonas axonopodis pv. citri str. 306, section 210 of 469 of the complete genome Length = 13074 Score = 38.2 bits (19), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 30 ccaaggccggcgacaccatcgtcgtcg 56 ||||||||||||||||| ||| ||||| Sbjct: 10395 ccaaggccggcgacaccttcggcgtcg 10369
>gb|AE012298.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 206 of 460 of the complete genome Length = 12693 Score = 38.2 bits (19), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 30 ccaaggccggcgacaccatcgtcgtcg 56 ||||||||||||||||| ||| ||||| Sbjct: 6911 ccaaggccggcgacaccttcggcgtcg 6885
>gb|DQ247790.1| Cochliobolus heterostrophus isolate AFTOL-ID 54 RNA polymerase II second largest subunit (RPB2) gene, partial cds Length = 1642 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 1308 acaccatcgtcgtcgagct 1290
>gb|U48881.2|CMU48881 Cancer magister hemocyanin subunit 6 (HC6) mRNA, complete cds Length = 2230 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cggcgacaccatcgtcgtc 55 ||||||||||||||||||| Sbjct: 242 cggcgacaccatcgtcgtc 224
>gb|AY861680.1| Cancer magister hemocyanin subunit 5 (Hc5) mRNA, complete cds Length = 2181 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cggcgacaccatcgtcgtc 55 ||||||||||||||||||| Sbjct: 242 cggcgacaccatcgtcgtc 224
>gb|AY861679.1| Cancer magister hemocyanin subunit 4 (Hc4) mRNA, complete cds Length = 2315 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 cggcgacaccatcgtcgtc 55 ||||||||||||||||||| Sbjct: 225 cggcgacaccatcgtcgtc 207
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcgacaccatcgtcgtcga 57 ||||||||||||||||||| Sbjct: 28904762 gcgacaccatcgtcgtcga 28904744
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 caaggccggcgacaccatcgtcg 53 |||| |||||||||||||||||| Sbjct: 23752713 caagtccggcgacaccatcgtcg 23752691
>ref|XM_392302.2| PREDICTED: Apis mellifera similar to CG3159-PA, isoform A (LOC408769), mRNA Length = 2001 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 cgacaccatcgtcgtcgag 58 ||||||||||||||||||| Sbjct: 1551 cgacaccatcgtcgtcgag 1569
>gb|BT004019.1| Arabidopsis thaliana clone RAFL15-24-A22 (R20536) unknown protein (At5g04500) mRNA, complete cds Length = 2664 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 atcgtcgtcgagctcaagaacgg 69 ||||||||| ||||||||||||| Sbjct: 1937 atcgtcgtcaagctcaagaacgg 1915
>emb|Y10142.1|RCNUOEF R.capsulatus nuoE gene, nuoF gene and orfA Length = 3303 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 133 ggatggcacggcggcgatc 151 ||||||||||||||||||| Sbjct: 2081 ggatggcacggcggcgatc 2099
>emb|Y09884.1|RC09884 R.capsulatus nuoD gene (partial), nuoE, nuoF genes, nuoG gene (partial), urf4, urf5, urf6, urf7 genes Length = 5275 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 133 ggatggcacggcggcgatc 151 ||||||||||||||||||| Sbjct: 2169 ggatggcacggcggcgatc 2187
>dbj|AK110881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G09, full insert sequence Length = 2047 Score = 38.2 bits (19), Expect = 8.2 Identities = 43/51 (84%) Strand = Plus / Plus Query: 91 catccactggcacggcgtcagacagattggaacaccgtgggcggatggcac 141 |||||||||||||||| || | |||||||| | |||||||| || ||||| Sbjct: 367 catccactggcacggcatccgccagattggcagcccgtgggctgacggcac 417
>gb|AF206721.1|AF206721 Brassica juncea isolate BJAO1 ascorbate oxidase mRNA, partial cds Length = 1841 Score = 38.2 bits (19), Expect = 8.2 Identities = 28/31 (90%) Strand = Plus / Plus Query: 76 caccgagggggtggtcatccactggcacggc 106 |||||| || || |||||||||||||||||| Sbjct: 224 caccgaaggtgttgtcatccactggcacggc 254
>dbj|AK060520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C02, full insert sequence Length = 2089 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcgacaccatcgtcgtcga 57 ||||||||||||||||||| Sbjct: 1646 gcgacaccatcgtcgtcga 1628
>gb|AY104253.1| Zea mays PCO133617 mRNA sequence Length = 1001 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatc 49 ||||||||||||||||||| Sbjct: 498 caaggccggcgacaccatc 516
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 38.2 bits (19), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 30 ccaaggccggcgacaccatcgtcgtcg 56 ||||||||||||||||| ||| ||||| Sbjct: 2731059 ccaaggccggcgacaccttcggcgtcg 2731085
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 caaggccggcgacaccatcgtcg 53 |||| |||||||||||||||||| Sbjct: 23680912 caagtccggcgacaccatcgtcg 23680890
>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128795 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 31 caaggccggcgacaccatcgtcg 53 |||| |||||||||||||||||| Sbjct: 2897 caagtccggcgacaccatcgtcg 2919
>gb|AF029365.1|AF029365 Rhodobacter capsulatus B10 nuo gene cluster, NADH-CoQ reductase subunits NUOA (nuoA), NUOB (nuoB), NUOC (nuoC), NUOD (nuoD), NUOE (nuoE), NUOF (nuoF), NUOG (nuoG), NUOH (nuoH), NUOI (nuoI), NUOJ (nuoJ), NUOK (nuoK), NUOL (nuoL), NUOM (nuoM), and NUON (nuoN) genes, and BIRA (birA) gene, complete cds Length = 19614 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 133 ggatggcacggcggcgatc 151 ||||||||||||||||||| Sbjct: 5146 ggatggcacggcggcgatc 5164
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcgacaccatcgtcgtcga 57 ||||||||||||||||||| Sbjct: 116924 gcgacaccatcgtcgtcga 116906
>gb|DQ278491.1| Phaeosphaeria nodorum second largest subunit of RNA polymerase II (RPB2) gene, complete cds Length = 5586 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 acaccatcgtcgtcgagct 60 ||||||||||||||||||| Sbjct: 3996 acaccatcgtcgtcgagct 3978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 816,150 Number of Sequences: 3902068 Number of extensions: 816150 Number of successful extensions: 59118 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56884 Number of HSP's gapped (non-prelim): 2234 length of query: 168 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 146 effective length of database: 17,147,199,772 effective search space: 2503491166712 effective search space used: 2503491166712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
