Clone Information

BLAST Search Result

Clone Name	bast40a04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein...	35	0.074
2	ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ...	27	0.091
3	SGO1_NEUCR (Q872U8) Shugoshin	35	0.13
4	BSN_MOUSE (O88737) Bassoon protein	33	0.28
5	NIFZ_FRAAL (P46040) Protein nifZ	33	0.28
6	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	33	0.37
7	MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (...	33	0.48
8	PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79) (Preg...	33	0.48
9	ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (I...	32	0.63
10	ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0	32	0.63
11	BSN_RAT (O88778) Bassoon protein	32	0.63
12	YJB1_SCHPO (O74939) Hypothetical protein C553.01c in chromosome III	32	0.63
13	KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Kat...	32	0.82
14	SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)	32	1.1
15	ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3...	32	1.1
16	NR1D1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA-related...	31	1.8
17	DNMT1_CHICK (Q92072) DNA (cytosine-5)-methyltransferase 1 (EC 2....	31	1.8
18	RBF1_CAEEL (P41885) Rabphilin-1	30	2.4
19	VILI2_ARATH (O81644) Villin-2	30	2.4
20	ADA2B_RABIT (O77830) Alpha-2B adrenergic receptor (Alpha-2B adre...	30	2.4
21	IF2_RHILO (Q98BI8) Translation initiation factor IF-2	30	2.4
22	TF3C2_MOUSE (Q8BL74) General transcription factor 3C polypeptide...	30	3.1
23	ZN499_HUMAN (Q96K62) Zinc finger protein 499	30	4.1
24	IF2_METCA (Q609C0) Translation initiation factor IF-2	30	4.1
25	RHLE_ECOLI (P25888) Putative ATP-dependent RNA helicase rhlE (EC...	30	4.1
26	LYOX_RAT (P16636) Protein-lysine 6-oxidase precursor (EC 1.4.3.1...	29	5.3
27	SEM6A_HUMAN (Q9H2E6) Semaphorin-6A precursor (Semaphorin VIA) (S...	29	5.3
28	MCP4_SCHPO (O14323) Meiotic coiled-coil protein 4	29	5.3
29	ADA2B_MOUSE (P30545) Alpha-2B adrenergic receptor (Alpha-2B adre...	29	5.3
30	NIFA_AZOBR (P30667) Nif-specific regulatory protein	29	5.3
31	VPS72_MOUSE (Q62481) Vacuolar protein sorting protein 72 homolog...	29	5.3
32	VGLG_BRSVS (O10686) Major surface glycoprotein G (Attachment gly...	29	6.9
33	KKQ8_YEAST (P36004) Probable serine/threonine-protein kinase YKL...	29	6.9
34	BC11B_HUMAN (Q9C0K0) B-cell lymphoma/leukemia 11B (B-cell CLL/ly...	29	6.9
35	RAIN_MOUSE (Q3U0S6) Ras-interacting protein 1 (Rain)	29	6.9
36	HISX_STRAW (Q82AA6) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)	29	6.9
37	DIAP2_HUMAN (O60879) Protein diaphanous homolog 2 (Diaphanous-re...	29	6.9
38	CREG2_HUMAN (Q8IUH2) CREG2 protein precursor	29	6.9
39	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	29	6.9
40	HISX_LEIXX (Q6AE76) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)	29	6.9
41	RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis prote...	28	9.1
42	FAU_DROME (Q9VGX3) Protein anoxia up-regulated	28	9.1
43	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	28	9.1
44	RS3_THEFY (Q47LJ9) 30S ribosomal protein S3	28	9.1
45	PAPPA_HUMAN (Q13219) Pappalysin-1 precursor (EC 3.4.24.79) (Preg...	28	9.1
46	TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily pro...	28	9.1
47	TILS_STRCO (Q9X8I6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR...	28	9.1
48	K0853_HUMAN (Q5T200) Protein KIAA0853	28	9.1
49	HISX_CAMJR (Q5HSJ3) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)	28	9.1
50	HISX_CAMJE (Q9PM77) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)	28	9.1
51	GORK_ARATH (Q94A76) Potassium channel GORK (Guard cell outward r...	28	9.1
52	ATG1_USTMA (Q4P0K0) Serine/threonine-protein kinase ATG1 (EC 2.7...	28	9.1

>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin
            ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1)
          Length = 4374

 Score = 35.4 bits (80), Expect = 0.074
 Identities = 27/77 (35%), Positives = 33/77 (42%)
 Frame = +1

Query: 172  LRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARL 351
            L    G+ SA  S+  PRAGS TP     PP V     RS     +A PP   S   A  
Sbjct: 2867 LEEAVGDTSAAGSSEQPRAGSSTPGDA--PPAVAEVQGRSDGSGESAQPP-EDSSPPASS 2923

Query: 352  NGDSVQHKALPYKGADA 402
               S +  A+   GAD+
Sbjct: 2924 ESSSTRDSAVAISGADS 2940

to top

>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 27.3 bits (59), Expect(2) = 0.091
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +1

Query: 214 PSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSAR 348
           P P      P   P PPR L P   SG    A  P G G   + R
Sbjct: 47  PPPTGLPRGPPPPPSPPRGLEPPVASGPTAGAGMPGGGGHAAALR 91



 Score = 26.6 bits (57), Expect(2) = 0.091
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  RQVRLREHPRCPHLGEPGPDGDARLAPLRRGAQ 197
           R +R++  P+  H  EP PD +   A  R GA+
Sbjct: 2   RMLRMKLPPKSTHPSEPPPDAEEPEADARPGAK 34

to top

>SGO1_NEUCR (Q872U8) Shugoshin|
          Length = 774

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 26/99 (26%), Positives = 43/99 (43%)
 Frame = +1

Query: 127 DARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIA 306
           DA++S N A +++     CA   SA     +        +K PK  R  +    +     
Sbjct: 658 DAQLSTNSASVDLYDFASCASPDSAAPQLEATTGDVPVNKKAPKGSRRASSAASTETTAT 717

Query: 307 AATPPGSGSRRSARLNGDSVQHKALPYKGADAEEEDQEE 423
           A+  P S  +R++ L    V  K+L  +    EEED+E+
Sbjct: 718 ASAKPRSSRKRASML----VPKKSLWAEELAQEEEDEED 752

to top

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +1

Query: 214 PSPRAGSVTPRKTPKPP----RVLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQHKAL 381
           P P  GSV  R  PK P    R  +P  +     A+AT PG  S R  R  G S Q    
Sbjct: 65  PGPGPGSVPRRLDPKEPLGSQRTTSPTPKQ----ASATAPGRESPRETRAQGPSGQEAES 120

Query: 382 PYKGADAEEEDQEE-KSP 432
           P +    +   Q   +SP
Sbjct: 121 PRRTLQVDSRTQRSGRSP 138

to top

>NIFZ_FRAAL (P46040) Protein nifZ|
          Length = 192

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 199 AISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRR 339
           A+ S P+  A + TP K   P +   P + +G+ + A TP     RR
Sbjct: 146 AVPSTPAEPAKAATPAKPATPAKPAPPAKPAGKTVGAGTPGAKDGRR 192

to top

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 211 APSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQHKALPYK 390
           +PSP     T    P P R  +P  +S R ++ + PP   S  +A+    S+  K    K
Sbjct: 598 SPSPPPKRRTASPPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPSISSK--HRK 655

Query: 391 GADAEEEDQEEKSP 432
           G+     ++E +SP
Sbjct: 656 GSPPSRSNRETRSP 669

to top

>MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 863

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
 Frame = +1

Query: 214 PSPRAGSVTPRKTP--------KPPRVLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQ 369
           P P  G+  PRK P        +P +   PL  S    ++  PP   SR+      + V 
Sbjct: 356 PKPSEGTPAPRKDPPWITLVQAEPKKKPAPLPPS----SSPGPPSQDSRQVENGGTEEVA 411

Query: 370 H-------KALPYKGADAEEEDQEEKSP 432
                   ++ PY   + EEED+EE++P
Sbjct: 412 QPSPTASLESKPYNPFEEEEEDKEEEAP 439

to top

>PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79)|
           (Pregnancy-associated plasma protein-A) (PAPP-A)
           (Insulin-like growth factor-dependent IGF-binding
           protein 4 protease) (IGF-dependent IGFBP-4 protease)
           (IGFBP-4ase)
          Length = 1624

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -3

Query: 392 PL*GSALCCTESPLSRAERREPEPGGVAAAIRRPERRSGVRTRG 261
           P  G A C T +   R     P PGG   A+R P RR     RG
Sbjct: 40  PAAGPATCATRAARGRRASPPPPPGGAWEAVRVPRRRQQRAARG 83

to top

>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell|
           protein 0)
          Length = 532

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 205 SSAPSPRAGSVTP-RKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARL 351
           SSA +PR     P R  P PP   T  RR GR  AA   PG  SRRSARL
Sbjct: 247 SSAQAPRQEDSRPARARPGPP---TRGRRRGRRPAA---PGPASRRSARL 290

to top

>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0|
          Length = 532

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 205 SSAPSPRAGSVTP-RKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARL 351
           SSA +PR     P R  P PP   T  RR GR  AA   PG  SRRSARL
Sbjct: 247 SSAQAPRQEDSRPARARPGPP---TRGRRRGRRPAA---PGPASRRSARL 290

to top

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +1

Query: 214 PSPRAGSVTPRKTPKPP----RVLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQHKAL 381
           P P  GSV+ R  PK P    R  +P  +     A+AT PG  S R  R  G S Q    
Sbjct: 65  PGPGPGSVSRRLDPKEPLGSQRATSPTPKQ----ASATAPGRESPRETRAQGLSGQEAEG 120

Query: 382 PYKGADAEEEDQEE-KSP 432
           P +    +   Q   +SP
Sbjct: 121 PRRTLQVDSRTQRSGRSP 138

to top

>YJB1_SCHPO (O74939) Hypothetical protein C553.01c in chromosome III|
          Length = 715

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 202 ISSAPSPRAGSVTPRKTPKPPRVLTPL 282
           ISS+P+ RA +++P K  KPP++LT +
Sbjct: 609 ISSSPTVRAVNLSPSKNQKPPKILTKI 635

to top

>KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 657

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
 Frame = +1

Query: 181 CAGELSAISSAPSPRAGSVTP-RKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARLNG 357
           C  +L  +S A S  +  V    +  K   V   L R+  L+A  TP GS  RRS     
Sbjct: 280 CHNQLIGVSFAQSTVSSFVVDLSRVTKSGSVPHGLLRNNELLAQPTPTGSSLRRSYDRPS 339

Query: 358 DS-------VQHKALPYKGADAEEEDQEEK 426
            S       V+H +   + + + EED++EK
Sbjct: 340 TSCSKPQSRVKHSSESERRSPSSEEDRDEK 369

to top

>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1691

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 196 SAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPP----GSGSRRSARLNGDS 363
           S  + APS +A + TP+   K P       RS R  +   PP     + SRRSAR +   
Sbjct: 164 SPATKAPSKQAPASTPKSASKKPTETRTSSRSTRRRSPTPPPPPKNSTRSRRSARFSDAV 223

Query: 364 VQHKAL 381
           ++ +A+
Sbjct: 224 IKDEAV 229

to top

>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
           (ATP-dependent helicase XNP) (X-linked nuclear protein)
           (dXNP) (d-xnp)
          Length = 1311

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
 Frame = +1

Query: 124 RDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSG--- 294
           ++A  S   A   + G RR      ++SS  S RA S      P+P R +  L+R     
Sbjct: 202 KEATTSSARAIRSVNGTRR-----GSLSSERSSRASSSRAESPPRPKRCVVRLKRVSLPK 256

Query: 295 --------RLIAAATPPGSGSRRSARLNGDSVQHKALPYKGADAEEEDQEEK 426
                   ++ + +    + S++S +    S       Y+   AEEE++EE+
Sbjct: 257 TKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEEEER 308

to top

>NR1D1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 508

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = +1

Query: 88  GRLGDKSDYESIRDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPR 267
           GR+  +     + + + + NLA  ++  L  C  E S    AP P +GSV P  +P P  
Sbjct: 100 GRIPKREKQRMLAEMQNAMNLANNQLSSL--CPLETSP---APHPTSGSVGP--SPPPAP 152

Query: 268 VLTPLRRSGRLIAAATPPGSGS 333
             TPL    +     TPP S S
Sbjct: 153 APTPLVGFSQFPQQLTPPRSPS 174

to top

>DNMT1_CHICK (Q92072) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)|
           (DNA methyltransferase GgaI) (DNA MTase GgaI) (MCMT)
           (M.GgaI)
          Length = 1537

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
 Frame = +1

Query: 196 SAISSAPSPRAGSVT-------PRKTPKPPRVLTPLRRSGR--LIAAATPPGSGSRRSAR 348
           S+ S  P+PRA            +K+P   RV    R SGR   I +    GS  R+S  
Sbjct: 146 SSSSLLPAPRARKARRSRSNGESKKSPASSRVT---RSSGRQPTILSVFSKGSTKRKSEE 202

Query: 349 LNGDSVQHKALPYKGADAEEEDQEEKSPMYIXQERLRV 462
           +NG        P   A+ +EE++EE       ++R+++
Sbjct: 203 VNG-----AVKPEVSAEKDEEEEEELEEKEQDEKRIKI 235

to top

>RBF1_CAEEL (P41885) Rabphilin-1|
          Length = 1106

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 106 SDYESIRDARISENLARMEMLGLRRCAGELSAISSAPSP--RAGSVTPRKTPKPPRVLTP 279
           +D  SI    +  + +  +  GL   +  L+ +    S    +G  TPR+   P R  + 
Sbjct: 579 ADTRSIDSGVVQSDHSNPQQSGLTCSSSSLTPLQQQASHDHHSGGGTPRRISNPDRTTSR 638

Query: 280 LRRSGRLIAAATPPGSGSRRSARLNGDSVQHKALPYKGADA 402
           + +S    +  TPP   S R++  N +S     + +K + A
Sbjct: 639 VAQSASGTSLVTPPPPISSRTSPDNCNSSPLNVMEHKSSSA 679

to top

>VILI2_ARATH (O81644) Villin-2|
          Length = 976

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
 Frame = +1

Query: 85   MGRLGDKSDYESIRDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPP 264
            +  L    +  S R A  S++       G R+ A  L+A+SSA +  + S    K+P PP
Sbjct: 761  LAALNSAFNSSSNRPAYSSQDRLNESHDGPRQRAEALAALSSAFNSSSSST---KSPPPP 817

Query: 265  RVLTPLRRSGRLIAAA------------TPPGSGSRRSARLN-GDSV-------QHKALP 384
            R +   + S R  A A            +P  S +RRS   N  D +       + +A  
Sbjct: 818  RPVGTSQASQRAAAVAALSQVLVAENKKSPDTSPTRRSTSSNPADDIPLTEAKDEEEASE 877

Query: 385  YKGADAEEEDQEEKSP 432
              G +A+EE  EE SP
Sbjct: 878  VAGLEAKEE--EEVSP 891

to top

>ADA2B_RABIT (O77830) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 394

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 205 SSAPSPRAGSVTPRKTPKPP--RVLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQHKA 378
           ++ PS  AG     +TP+ P  + L P          AT P SG  +   ++G S++ +A
Sbjct: 234 ANGPSKPAGEKEEGETPEDPGTQALPP--------GWATLPNSGQGQKEGVSGASLEEEA 285

Query: 379 LPYKGADAEEEDQEEKSPMYI 441
                 + EEE++EE  P  +
Sbjct: 286 -----EEEEEEEEEEDEPQAV 301

to top

>IF2_RHILO (Q98BI8) Translation initiation factor IF-2|
          Length = 860

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +1

Query: 214 PSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSA----RLNGDSVQHKAL 381
           P P A +  P  TPKPP    P+ +     A   PP +   RS      L+   ++ +  
Sbjct: 60  PEPAAAAPVPVFTPKPPVAAAPVVQEAPKAAPPPPPRAPVERSGMVLNELSRSEMEARRR 119

Query: 382 PYKGADAEEEDQEEKS 429
             +G+   E +  +++
Sbjct: 120 ALEGSKVREVEDRQRA 135

to top

>TF3C2_MOUSE (Q8BL74) General transcription factor 3C polypeptide 2|
           (Transcription factor IIIC-beta subunit) (TF3C-beta)
           (TFIIIC 110 kDa subunit) (TFIIIC110)
          Length = 907

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 27/102 (26%), Positives = 41/102 (40%)
 Frame = +1

Query: 109 DYESIRDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRR 288
           D+E+    R     A++ +L L+  A ELS    AP        P   PK P+V +P + 
Sbjct: 172 DFETPSGERPRRRAAQVALLYLQELAEELSTALPAP--------PLSGPKSPKVSSPTKP 223

Query: 289 SGRLIAAATPPGSGSRRSARLNGDSVQHKALPYKGADAEEED 414
                A++     GS R         +   L  +G D EE +
Sbjct: 224 KKTRQASSQGEEDGSARD--------EDFVLQVEGEDEEESE 257

to top

>ZN499_HUMAN (Q96K62) Zinc finger protein 499|
          Length = 511

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 202 ISSAPSPRAGSVTPRKTPKPPRVL-TPLRRSGRLIAAATPPG-SGSRRSARLNGDSVQHK 375
           I+ A +P   + TP  TP PP +    LR   R + AA PPG  G+  S +    +    
Sbjct: 122 IARARAPGTSAPTPLPTPVPPPLAPAQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQL 181

Query: 376 ALPYKGADAEEEDQE 420
             P   A AE  D +
Sbjct: 182 PAPPTPAKAEGPDAD 196

to top

>IF2_METCA (Q609C0) Translation initiation factor IF-2|
          Length = 868

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +1

Query: 175 RRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARLN 354
           R+ A E   +++ P+P A    PR  P+P     P R S     A  P    + R     
Sbjct: 174 RQAAAERETVAAKPAPVAAPPIPRPAPEP---RPPARPSAGKPKAEAPRAHPAERETEAR 230

Query: 355 GD 360
           GD
Sbjct: 231 GD 232

to top

>RHLE_ECOLI (P25888) Putative ATP-dependent RNA helicase rhlE (EC 3.6.1.-)|
          Length = 454

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 332 EPEPGGVAAAIR--RPERRSGVRTRGGFGVFLGVTLPARGEGAEEMALSSPAQRRKPS 165
           EP+P   A  I+  R +R  G R +GG     G   P RGEG  + A + PA+  KPS
Sbjct: 377 EPDPSIKAEPIQNGRQQRGGGGRGQGGGR---GQQQPRRGEGGAKSASAKPAE--KPS 429

to top

>LYOX_RAT (P16636) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl|
           oxidase)
          Length = 411

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = -3

Query: 374 LCCTESPLSRAERREPEPGGVAAAIRRPERRSGVRTRGGFGVFLGVTLPARGEGAEEMAL 195
           L   ++  + A  R P P GVAA   RP  R   +        +G +    G+GA   A 
Sbjct: 86  LLLRDNRTASARARTPSPSGVAAGRPRPAARHWFQ--------VGFSPSGAGDGASRRAA 137

Query: 194 SSPAQRRKPSIS 159
           +  A  + P +S
Sbjct: 138 NRTASPQPPQLS 149

to top

>SEM6A_HUMAN (Q9H2E6) Semaphorin-6A precursor (Semaphorin VIA) (Sema VIA)|
           (Semaphorin 6A-1) (SEMA6A-1)
          Length = 1030

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 238 TPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQHKALP 384
           T  K PKP  +LTPL  +G+L      PG+ ++   + +   +   ALP
Sbjct: 712 TQSKDPKPEAILTPLMHNGKL----ATPGNTAKMLIKADQHHLDLTALP 756

to top

>MCP4_SCHPO (O14323) Meiotic coiled-coil protein 4|
          Length = 355

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 340 SARLNGDSVQHKALPYKGADAEEEDQEEKSPMYIXQERLR 459
           S RLN DS+   A  +K     +++ ++K+ +YI +E L+
Sbjct: 23  SLRLNSDSLDFLARDFKVEGMSQDNFDQKTKLYITEESLQ 62

to top

>ADA2B_MOUSE (P30545) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor)
          Length = 450

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
 Frame = +1

Query: 166 LGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSA 345
           LG +R +GE  +    P P AG V    + K P +++PL   G       PP        
Sbjct: 207 LGAKRGSGEGESKKPRPGPAAGGVP--ASAKVPTLVSPLSSVGEANGHPKPPREKEEGET 264

Query: 346 RLNGD-------------SVQHKALPYKGADAE---EEDQEE 423
             + +             SVQ +     GA AE   EED+EE
Sbjct: 265 PEDPEARALPPNWSALPRSVQDQKKGTSGATAEKGAEEDEEE 306

to top

>NIFA_AZOBR (P30667) Nif-specific regulatory protein|
          Length = 625

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = -3

Query: 329 PEPGGVAAAIRRPERRSGVRTRGGFGVFLGVTLPARGEGAEEMALSSPAQRRKP 168
           PEP G AAA  RP RR   R   G         PA G G  + A   P++   P
Sbjct: 506 PEPAGAAAARGRPARRVVPRPLAGLR-----RRPAGGSGPPDPACPCPSRAPLP 554

to top

>VPS72_MOUSE (Q62481) Vacuolar protein sorting protein 72 homolog (Protein YL-1)|
           (Transcription factor-like 1)
          Length = 368

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
 Frame = +1

Query: 115 ESIRDARISENL--------------ARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKT 252
           E +R+A+I+E L               + ++   R+C G +    S   P  G   P++ 
Sbjct: 171 ELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEE 230

Query: 253 --------PKPPR-VLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQHKALP 384
                   P P    L P   +G   AAATPP   SR     + D+   +  P
Sbjct: 231 NVDVEGLDPAPTASALAPHAGTGTGAAAATPPAHCSRTFITFSDDATFEEWFP 283

to top

>VGLG_BRSVS (O10686) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 257

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
 Frame = +1

Query: 181 CAGELSAIS-------SAPSPRAGSVTPRKTPKP 261
           C G L+ +S        APS RA ++TP+KTPKP
Sbjct: 176 CEGNLACLSLCQIGPERAPS-RAPTITPKKTPKP 208

to top

>KKQ8_YEAST (P36004) Probable serine/threonine-protein kinase YKL168C (EC|
           2.7.11.1)
          Length = 734

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +1

Query: 205 SSAPSPRAGSVTPRKTPKPPRVL----TPLRRSGRLIAAATPPGSGSRRSARLNGDSVQH 372
           SS+ SP+  S  PR++    ++L    +P+R+    +   TP   G     R  G    +
Sbjct: 58  SSSTSPKRSSEPPRRSTVSAQILDPKNSPIRQRSYTLKCCTP---GLSHPFRQTGSGASN 114

Query: 373 KALPYKGADAEEEDQEEKSPMY 438
               ++    EE++     P Y
Sbjct: 115 SPTRHRSISGEEQEIVNSLPEY 136

to top

>BC11B_HUMAN (Q9C0K0) B-cell lymphoma/leukemia 11B (B-cell CLL/lymphoma 11B)|
           (Radiation-induced tumor suppressor gene 1 protein)
           (hRit1) (COUP-TF-interacting protein 2)
          Length = 894

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +1

Query: 286 RSGRLIAAATPPGSGSRRSA-----RLNGDSVQHKALPYKGADAEEEDQEEK 426
           RS   ++AA+ P  G+   A       +GD   H++ P  G + EEED+EE+
Sbjct: 487 RSDDGLSAASSPEPGTSELAGEGLKAADGDFRHHESDPSLGHEPEEEDEEEE 538

to top

>RAIN_MOUSE (Q3U0S6) Ras-interacting protein 1 (Rain)|
          Length = 961

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +1

Query: 145 NLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPG 324
           N  R ++  L R     +++ S+ S      +    P PP     LRR G + AA    G
Sbjct: 26  NSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPPPPPHVELRRVGAVKAAGGASG 85

Query: 325 SGSRRSARL-NGDSVQHKALPYKGADAEEEDQEEKSP 432
           S ++R ++L  G        P     A+    E+K P
Sbjct: 86  SRAKRISQLFRGSGAGGAGGPGTPGGAQRWASEKKMP 122

to top

>HISX_STRAW (Q82AA6) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 441

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 323 PGGVAAAIRRPERRSGVRTRGGFGVFLGVTL----PARGEGAEEMALSSPAQ 180
           PGG       P  R G+   GG  V+    +    PA+  G E +AL+SPAQ
Sbjct: 113 PGGSVTEKWVPVDRVGLYAPGGRSVYPSSVVMNVVPAQEAGVESIALASPAQ 164

to top

>DIAP2_HUMAN (O60879) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2)
          Length = 1101

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = +1

Query: 124 RDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLI 303
           RD +I E  A ++ L  R  A  LS+ S  P P A    P   P PP    PL   G  +
Sbjct: 521 RDEKIKELEAEIQQL--RTQAQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPPL-PGGAPL 577

Query: 304 AAATPPGSG 330
               PP  G
Sbjct: 578 PPPPPPLPG 586

to top

>CREG2_HUMAN (Q8IUH2) CREG2 protein precursor|
          Length = 290

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 220 PRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPG 324
           PRAG+   R  P PP + +  R  G+   A+ PPG
Sbjct: 87  PRAGAARARPPPAPPGMFSYRREGGQ--TASAPPG 119

to top

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = +1

Query: 100 DKSDYESIRDARISENLARMEMLGLRRCAGELSAISSAPSPRAGSVTPRKTPKPPRVLTP 279
           D     S  D R   +  +   +G RR      + S +P  R    +PR      R  +P
Sbjct: 495 DSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRMQ-MGKRWQSP 553

Query: 280 LRRSGRLIAAATPPGSGSRRS 342
           + +SGR   + +PP +  RRS
Sbjct: 554 VTKSGRRRRSPSPPPTRRRRS 574

to top

>HISX_LEIXX (Q6AE76) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 436

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 323 PGGVAAAIRRPERRSGVRTRGGFGVFLGVTL----PARGEGAEEMALSSPAQR 177
           PG V     +P  R+G+   GG  V+    +    PA+  G   +AL+SP QR
Sbjct: 111 PGAVIEQRWQPVERAGLYVPGGKAVYPSSVVMNAVPAQVAGVASIALASPPQR 163

to top

>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1|
           (Rab3-interacting molecule 1) (RIM 1)
          Length = 1615

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +1

Query: 199 AISSAPSPRAGSVTPRKTPKP-----PRVLTPLRRSGRLIAAATPPGSG--SRRSARLNG 357
           A ++ P    G   PR  P P     PRV  PLR+ GRL      PGS    R++ R   
Sbjct: 452 AAAAQPPTEHGPPPPRPAPGPAEPPEPRVPEPLRKQGRL-----DPGSAVLLRKAKREKA 506

Query: 358 DSV 366
           +S+
Sbjct: 507 ESM 509

to top

>FAU_DROME (Q9VGX3) Protein anoxia up-regulated|
          Length = 619

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 196 SAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSR 336
           + ++   +PR+     R TP P RV+T   RS        PPG G+R
Sbjct: 140 TTVTRVYAPRSSLSPLRITPSPVRVITSPVRSVPSYLKRLPPGYGAR 186

to top

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 202  ISSAPSPRAGSVTPR----KTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSA 345
            + S P P  G + PR    +TP+P    +  RR GR   A+   G G  R++
Sbjct: 2369 VLSPPPPPPGELAPRAHPARTPRPGPGDSRSRRGGRRWTASAGKGGGGPRAS 2420

to top

>RS3_THEFY (Q47LJ9) 30S ribosomal protein S3|
          Length = 270

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 362 ESPLSRAERREPEPGGVAAAIRRPERRSGVRTRGGFG 252
           E+P++RAER   +    AA  +R E R G R RGG G
Sbjct: 205 EAPMTRAEREAAQAAQRAAGPQRRE-RPGRRRRGGGG 240

to top

>PAPPA_HUMAN (Q13219) Pappalysin-1 precursor (EC 3.4.24.79)|
           (Pregnancy-associated plasma protein-A) (PAPP-A)
           (Insulin-like growth factor-dependent IGF-binding
           protein 4 protease) (IGF-dependent IGFBP-4 protease)
           (IGFBP-4ase)
          Length = 1628

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -3

Query: 392 PL*GSALCCTESPLSR--AERREPEPGGVAAAIRRPERRSGVRTRG 261
           P  G A C T +   R  +    P PGG   A+R P RR     RG
Sbjct: 40  PAAGPATCATRAARGRRASPPPPPPPGGAWEAVRVPRRRQQREARG 85

to top

>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)|
          Length = 1544

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 190 ELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGS 333
           ++S  S +P     S+  RK+PK PR    L RS RL       GS S
Sbjct: 532 KISRASKSPKLPRISIEARKSPKLPRAAQELSRSPRLPLRKPSVGSPS 579

to top

>TILS_STRCO (Q9X8I6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 352

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 323 PGGVAAAI---RRPERRSGVRTRGGFGVFLGVTLPARGEGAEEMALSSPAQRRKPSISIR 153
           P GV AA    R PER  G+ T         + L A   GA+ MAL+S      P + +R
Sbjct: 28  PAGVPAATAVERTPERAPGLPTAP-------LVLVACSGGADSMALASALAFEAPRLGVR 80

Query: 152 A 150
           A
Sbjct: 81  A 81

to top

>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +1

Query: 205 SSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAATPPGSGSRRSARLNGDSVQHKALP 384
           S++P P     +P++   PPR  +P+R  GR     T      R   R   +  + K   
Sbjct: 370 SASPYPSHSLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERR---EDTRGKRDR 426

Query: 385 YKGADAEEEDQEEKS 429
            K +  E E ++++S
Sbjct: 427 EKDSREEREYEQDQS 441

to top

>HISX_CAMJR (Q5HSJ3) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 428

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 332 EPEPGGVAAAIRRPERRSGVRTRGG----FGVFLGVTLPARGEGAEEMALSSPAQ 180
           E   G     + RP  + G+   GG    F   L + +PA+  G E++ L+SPA+
Sbjct: 107 ETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPAK 161

to top

>HISX_CAMJE (Q9PM77) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 428

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 332 EPEPGGVAAAIRRPERRSGVRTRGG----FGVFLGVTLPARGEGAEEMALSSPAQ 180
           E   G     + RP  + G+   GG    F   L + +PA+  G E++ L+SPA+
Sbjct: 107 ETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPAK 161

to top

>GORK_ARATH (Q94A76) Potassium channel GORK (Guard cell outward rectifying K(+)|
           channel) (AtGORK)
          Length = 820

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 340 SARLNGDSVQHKALPYKGADAEEEDQEEKSPMYI 441
           SA   GD  Q K+L   GAD  + D + +SP+++
Sbjct: 537 SAAFQGDFYQLKSLIRSGADPNKTDYDGRSPLHL 570

to top

>ATG1_USTMA (Q4P0K0) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1)
          Length = 990

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
 Frame = +1

Query: 19  RSQSPKXXXXXXXXXXXXXXXXMGRLGDKSDYESIRDARISENLAR--MEMLGLR-RCAG 189
           R ++P+                +G+     + +S+    +++ LA      LGL  R   
Sbjct: 480 RDEAPQATTEHFGSSKGGEDSFLGKEYVLIEKQSVEVNALADELAASPQSRLGLASRRPS 539

Query: 190 ELSAISSAPSPRAGSVTPRKTPKPPRVLTPLRRSGRLIAAAT-----PPGS 327
            LS +SS P P A   +P   P       P+R +     A+T     PPGS
Sbjct: 540 RLSRLSSGPLPSAPGASPPTAPPTILSSKPIRIANNTNTASTGAFALPPGS 590


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,895,231
Number of Sequences: 219361
Number of extensions: 739802
Number of successful extensions: 3378
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result