ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast39g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05, complete sequence Length = 163130 Score = 141 bits (71), Expect = 2e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 235 ggcggtgctcgcgccgttccccgacctcgccggcttcgcgcgcctgctcgcgtccagccc 294 ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 31653 ggcggtgctcgcggcgttcccggacctcgccggcttcgcgcggctgctcgcgtccagccc 31712 Query: 295 cgtggcccgggagctggccgggcggtcctcgctcacgctgctcgccgtgcc 345 |||||| ||||||| || |||||||| ||||| |||||||| |||||||| Sbjct: 31713 ggtggccagggagctcgcggggcggtcgtcgctgacgctgctggccgtgcc 31763
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 141 bits (71), Expect = 2e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 235 ggcggtgctcgcgccgttccccgacctcgccggcttcgcgcgcctgctcgcgtccagccc 294 ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 22442246 ggcggtgctcgcggcgttcccggacctcgccggcttcgcgcggctgctcgcgtccagccc 22442305 Query: 295 cgtggcccgggagctggccgggcggtcctcgctcacgctgctcgccgtgcc 345 |||||| ||||||| || |||||||| ||||| |||||||| |||||||| Sbjct: 22442306 ggtggccagggagctcgcggggcggtcgtcgctgacgctgctggccgtgcc 22442356
>ref|NM_188188.1| Oryza sativa (japonica cultivar-group), mRNA Length = 717 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 236 gcggtgctcgcgccgttccccgacctcgccggcttcgcgcg 276 |||||||||||| |||||| |||||||||||||||||||| Sbjct: 128 gcggtgctcgcggtgttcccagacctcgccggcttcgcgcg 88
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 236 gcggtgctcgcgccgttccccgacctcgccggcttcgcgcg 276 |||||||||||| |||||| |||||||||||||||||||| Sbjct: 13141028 gcggtgctcgcggtgttcccagacctcgccggcttcgcgcg 13141068
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 236 gcggtgctcgcgccgttccccgacctcgccggcttcgcgcg 276 |||||||||||| |||||| |||||||||||||||||||| Sbjct: 59355 gcggtgctcgcggtgttcccagacctcgccggcttcgcgcg 59395
>gb|AC098481.2| Homo sapiens chromosome 3 clone RP11-349E16, complete sequence Length = 227137 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 173 ctcgcgctggccgggctgctgctggcgct 201 ||||||||||||| ||||||||||||||| Sbjct: 66707 ctcgcgctggccgcgctgctgctggcgct 66735
>gb|AC114876.2| Homo sapiens chromosome 3 clone RP11-728B21, complete sequence Length = 171697 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 173 ctcgcgctggccgggctgctgctggcgct 201 ||||||||||||| ||||||||||||||| Sbjct: 57084 ctcgcgctggccgcgctgctgctggcgct 57056
>gb|DQ213265.1| Taeniopygia guttata clone 0061P0012G10 hypothetical protein FLJ31204-like mRNA, complete sequence Length = 1352 Score = 46.1 bits (23), Expect = 0.074 Identities = 32/35 (91%) Strand = Plus / Plus Query: 190 gctgctggcgctcctcccgccgccggccgctgccg 224 |||||||||||| ||||||||||| |||| ||||| Sbjct: 98 gctgctggcgctgctcccgccgcccgccggtgccg 132
>ref|NM_185599.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 927 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 gccgtcgacgtccaggcggtgctcgc 246 ||||||||||||| |||||||||||| Sbjct: 151 gccgtcgacgtcccggcggtgctcgc 176
>ref|NM_198612.1| Mus musculus cDNA sequence BC049816 (BC049816), mRNA Length = 1862 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 168 tcctcctcgcgctggccgggctgctgctggcgct 201 |||| ||||||||||||| ||||||||| ||||| Sbjct: 142 tcctgctcgcgctggccgtgctgctgctagcgct 175
>ref|XM_415284.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ20674 (LOC416991), mRNA Length = 1524 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 176 gcgctggccgggctgctgctggcgct 201 |||||||||||||||||||| ||||| Sbjct: 31 gcgctggccgggctgctgctcgcgct 56
>gb|BC049816.1| Mus musculus cDNA sequence BC049816, mRNA (cDNA clone MGC:59592 IMAGE:6509198), complete cds Length = 1862 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 168 tcctcctcgcgctggccgggctgctgctggcgct 201 |||| ||||||||||||| ||||||||| ||||| Sbjct: 142 tcctgctcgcgctggccgtgctgctgctagcgct 175
>ref|XM_001000911.1| PREDICTED: Mus musculus cDNA sequence BC049816 (BC049816), mRNA Length = 1715 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 168 tcctcctcgcgctggccgggctgctgctggcgct 201 |||| ||||||||||||| ||||||||| ||||| Sbjct: 32 tcctgctcgcgctggccgtgctgctgctagcgct 65
>gb|AC121925.2| Mus musculus BAC clone RP24-201D17 from 6, complete sequence Length = 180015 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 168 tcctcctcgcgctggccgggctgctgctggcgct 201 |||| ||||||||||||| ||||||||| ||||| Sbjct: 132595 tcctgctcgcgctggccgtgctgctgctagcgct 132628
>dbj|AK144790.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730035B02 product:hypothetical protein, full insert sequence Length = 1223 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 168 tcctcctcgcgctggccgggctgctgctggcgct 201 |||| ||||||||||||| ||||||||| ||||| Sbjct: 122 tcctgctcgcgctggccgtgctgctgctagcgct 155
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 gccgtcgacgtccaggcggtgctcgc 246 ||||||||||||| |||||||||||| Sbjct: 2998419 gccgtcgacgtcccggcggtgctcgc 2998444
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 176 gcgctggccgggctgctgctgg 197 |||||||||||||||||||||| Sbjct: 2245268 gcgctggccgggctgctgctgg 2245247 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 254 cccgacctcgccggcttcgcgcgcctgctcgcg 286 ||||||||||||| || ||||| |||||||||| Sbjct: 2160097 cccgacctcgccgcctccgcgctcctgctcgcg 2160065 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gcgctggccgggctgctgct 195 |||||||||||||||||||| Sbjct: 968028 gcgctggccgggctgctgct 968009
>ref|XM_575622.1| PREDICTED: Rattus norvegicus similar to CG9996-PA (LOC500272), mRNA Length = 1228 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 173 ctcgcgctggccgggctgctgctggc 198 ||||||||||||| |||||||||||| Sbjct: 37 ctcgcgctggccgtgctgctgctggc 62
>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0702F05 Length = 145018 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 gccgtcgacgtccaggcggtgctcgc 246 ||||||||||||| |||||||||||| Sbjct: 86368 gccgtcgacgtcccggcggtgctcgc 86393
>dbj|AK070453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048N12, full insert sequence Length = 1279 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 gccgtcgacgtccaggcggtgctcgc 246 ||||||||||||| |||||||||||| Sbjct: 282 gccgtcgacgtcccggcggtgctcgc 307
>gb|AF079900.1|AF079900 Streptomyces rimosus tetracycline efflux protein (otrB) gene, complete cds Length = 1947 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 228 acgtccaggcggtgctcgcgccgttc 253 ||||||| |||||||||||||||||| Sbjct: 695 acgtccatgcggtgctcgcgccgttc 670
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 173 ctcgcgctggccgggctgctgctggc 198 ||||||||||||| |||||||||||| Sbjct: 2152754 ctcgcgctggccgcgctgctgctggc 2152729
>gb|AF061335.1|AF061335 Streptomyces rimosus oxytetracycline exporter (otrB) gene, complete cds Length = 1611 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 228 acgtccaggcggtgctcgcgccgttc 253 ||||||| |||||||||||||||||| Sbjct: 575 acgtccatgcggtgctcgcgccgttc 550
>gb|M20370.1|STMTETA S.rimosus tetracycline-resistance determinant (tet347) gene, complete cds Length = 2052 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 228 acgtccaggcggtgctcgcgccgttc 253 ||||||| |||||||||||||||||| Sbjct: 802 acgtccatgcggtgctcgcgccgttc 777
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 cgcgctggccgggctgctgctggcg 199 ||||||||||||| ||||||||||| Sbjct: 98967 cgcgctggccgggatgctgctggcg 98943
>gb|DQ214401.1| Taeniopygia guttata clone 0061P0005E01 mRNA sequence Length = 692 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 178 gctggccgggctgctgctggcgctc 202 |||||||||||||||||||| |||| Sbjct: 232 gctggccgggctgctgctggggctc 256
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 gcgctggccgggctgctgctg 196 ||||||||||||||||||||| Sbjct: 365516 gcgctggccgggctgctgctg 365496 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gccgggctgctgctggcgct 201 |||||||||||||||||||| Sbjct: 3362547 gccgggctgctgctggcgct 3362528
>emb|BX284651.5| Mouse DNA sequence from clone RP23-308C21 on chromosome X, complete sequence Length = 109915 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 caccccactcccctctcactc 98 ||||||||||||||||||||| Sbjct: 87765 caccccactcccctctcactc 87745
>gb|AY129333.1| Mycobacterium phage Che9c, complete sequence Length = 57050 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gctggccgggctgctgctggc 198 ||||||||||||||||||||| Sbjct: 13840 gctggccgggctgctgctggc 13820
>gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121242 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 caccccactcccctctcactc 98 ||||||||||||||||||||| Sbjct: 89486 caccccactcccctctcactc 89506
>gb|AC092850.13| Homo sapiens 12 BAC RP11-346B9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176733 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 caccccactcccctctcactc 98 ||||||||||||||||||||| Sbjct: 38292 caccccactcccctctcactc 38312
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 cctcgccggcttcgcgcgcct 279 ||||||||||||||||||||| Sbjct: 2299479 cctcgccggcttcgcgcgcct 2299499
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 cgctggccgggctgctgctgg 197 ||||||||||||||||||||| Sbjct: 3894196 cgctggccgggctgctgctgg 3894176 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cgcgctggccgggctgctgc 194 |||||||||||||||||||| Sbjct: 4439028 cgcgctggccgggctgctgc 4439047
>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete sequence Length = 163961 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ggctgctgctggcgctcctcc 206 ||||||||||||||||||||| Sbjct: 56823 ggctgctgctggcgctcctcc 56843
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctcgcgctggccgggctgctg 193 ||||||||||||||||||||| Sbjct: 505323 ctcgcgctggccgggctgctg 505303
>gb|DQ138831.1| Drosophila simulans strain Ky-a CG12283 gene, partial cds Length = 2592 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 tgctggtgctctgctcccggc 128 ||||||||||||||||||||| Sbjct: 2210 tgctggtgctctgctcccggc 2190
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tcgcgctggccgggctgctg 193 |||||||||||||||||||| Sbjct: 957506 tcgcgctggccgggctgctg 957487
>ref|XM_479991.1| Oryza sativa (japonica cultivar-group), mRNA Length = 715 Score = 40.1 bits (20), Expect = 4.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 206 ccgccgccg-gccgctgccgtcgacgtc 232 ||||||||| |||||||||||||||||| Sbjct: 517 ccgccgccgcgccgctgccgtcgacgtc 544
>ref|XM_507126.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1613_G04.25 mRNA Length = 916 Score = 40.1 bits (20), Expect = 4.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 206 ccgccgccg-gccgctgccgtcgacgtc 232 ||||||||| |||||||||||||||||| Sbjct: 691 ccgccgccgcgccgctgccgtcgacgtc 718
>ref|XM_465607.1| Oryza sativa (japonica cultivar-group), mRNA Length = 387 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 cccgccgccggccgctgccgtcgacgtc 232 ||||||||| ||||||||||||| |||| Sbjct: 199 cccgccgcccgccgctgccgtcgtcgtc 172
>ref|XM_464013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1191 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ctcccgccgccggccgctgc 222 |||||||||||||||||||| Sbjct: 399 ctcccgccgccggccgctgc 418
>ref|XM_464003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1209 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ctcccgccgccggccgctgc 222 |||||||||||||||||||| Sbjct: 123 ctcccgccgccggccgctgc 142
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 gctcgcgccgttccccgacctcgc 264 |||||||||||||||||| ||||| Sbjct: 2847432 gctcgcgccgttccccgagctcgc 2847455
>gb|BC067969.1| Xenopus tropicalis hypothetical protein MGC69473, mRNA (cDNA clone MGC:69473 IMAGE:5336119), complete cds Length = 2186 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 tggccgggctgctgctggcg 199 |||||||||||||||||||| Sbjct: 580 tggccgggctgctgctggcg 561
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gccgttccccgacctcgccg 266 |||||||||||||||||||| Sbjct: 181923 gccgttccccgacctcgccg 181904
>ref|XM_368097.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01147.4) partial mRNA Length = 2004 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 cggccgctgccgtcgacgtccagg 236 ||||||||||||||||| |||||| Sbjct: 47 cggccgctgccgtcgacatccagg 70
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 gcgctggccgggctgctgctggcg 199 |||||||||| ||||||||||||| Sbjct: 1588534 gcgctggccgcgctgctgctggcg 1588557 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tcgcgctggccgggctgctg 193 |||||||||||||||||||| Sbjct: 1099151 tcgcgctggccgggctgctg 1099132
>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2, complete sequence Length = 180976 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 caccccactcccctctcact 97 |||||||||||||||||||| Sbjct: 55552 caccccactcccctctcact 55533
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gccggcttcgcgcgcctgct 282 |||||||||||||||||||| Sbjct: 146505 gccggcttcgcgcgcctgct 146524
>gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, complete sequence Length = 163547 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ccgggctgctgctggcgctc 202 |||||||||||||||||||| Sbjct: 130416 ccgggctgctgctggcgctc 130397
>emb|X78934.1|BTTPKIIS B.taurus mRNA for tau protein kinase II 23kD subunit Length = 1318 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ggccgggctgctgctggcgc 200 |||||||||||||||||||| Sbjct: 19 ggccgggctgctgctggcgc 38
>ref|NM_001024578.1| Gallus gallus tumor necrosis factor (ligand) superfamily, member 15 (TNFSF15), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 gctggccgggctgctgctggcgct 201 |||||||| ||||||||||||||| Sbjct: 138 gctggccgtgctgctgctggcgct 161
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gccgttccccgacctcgccg 266 |||||||||||||||||||| Sbjct: 181752 gccgttccccgacctcgccg 181733
>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16 Length = 123385 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 tcgcgctggccgggctgctgctgg 197 ||||||||||| |||||||||||| Sbjct: 59011 tcgcgctggcctggctgctgctgg 58988
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 tcgcgctggccgggctgctgctgg 197 ||||||||||| |||||||||||| Sbjct: 194838 tcgcgctggcctggctgctgctgg 194815
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gccgttccccgacctcgccg 266 |||||||||||||||||||| Sbjct: 181942 gccgttccccgacctcgccg 181923
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gccgggctgctgctggcgct 201 |||||||||||||||||||| Sbjct: 231289 gccgggctgctgctggcgct 231270
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tggccgggctgctgctggcg 199 |||||||||||||||||||| Sbjct: 1128697 tggccgggctgctgctggcg 1128716
>gb|AC026689.6| Homo sapiens chromosome 5 clone CTB-55A14, complete sequence Length = 215150 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgctcctcccgccgccggcc 217 |||||||||||||||||||| Sbjct: 59083 cgctcctcccgccgccggcc 59064
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ccgccggccgctgccgtcga 228 |||||||||||||||||||| Sbjct: 4779088 ccgccggccgctgccgtcga 4779069
>gb|AE011920.1| Xanthomonas axonopodis pv. citri str. 306, section 298 of 469 of the complete genome Length = 10330 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gccgggctgctgctggcgct 201 |||||||||||||||||||| Sbjct: 9298 gccgggctgctgctggcgct 9279
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ctggccgggctgctgctggc 198 |||||||||||||||||||| Sbjct: 3806662 ctggccgggctgctgctggc 3806643 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gctggccgggctgctgctgg 197 |||||||||||||||||||| Sbjct: 330091 gctggccgggctgctgctgg 330072
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctcccgccgccggccgctg 221 |||||||||||||||||||| Sbjct: 1049267 cctcccgccgccggccgctg 1049286
>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence Length = 165090 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ccgggctgctgctggcgctc 202 |||||||||||||||||||| Sbjct: 21776 ccgggctgctgctggcgctc 21757
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gctggccgggctgctgctgg 197 |||||||||||||||||||| Sbjct: 206305 gctggccgggctgctgctgg 206286
>emb|CR353356.1| Gallus gallus finished cDNA, clone ChEST283o9 Length = 821 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 gctggccgggctgctgctggcgct 201 |||||||| ||||||||||||||| Sbjct: 246 gctggccgtgctgctgctggcgct 269
>gb|AF154916.1|AF154916 Chlamydomonas reinhardtii variable flagellar number protein (VFL1) gene, complete cds Length = 8835 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gcctcgtcctcctcgcgctg 181 |||||||||||||||||||| Sbjct: 7462 gcctcgtcctcctcgcgctg 7443
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgccgccggccgctgccgtcgacg 230 ||||||||||||||| |||||||| Sbjct: 8213832 cgccgccggccgctggcgtcgacg 8213855 Score = 40.1 bits (20), Expect = 4.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 206 ccgccgccg-gccgctgccgtcgacgtc 232 ||||||||| |||||||||||||||||| Sbjct: 2110466 ccgccgccgcgccgctgccgtcgacgtc 2110493
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 cccgccgccggccgctgccgtcgacgtc 232 ||||||||| ||||||||||||| |||| Sbjct: 16287460 cccgccgcccgccgctgccgtcgtcgtc 16287433 Score = 40.1 bits (20), Expect = 4.6 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 201 tcctcccgccgccggccgctgccgtcgacgtccagg 236 ||||||||||||| ||||| |||| ||||||||||| Sbjct: 4247886 tcctcccgccgcc-gccgccgccgacgacgtccagg 4247852 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ctcccgccgccggccgctgc 222 |||||||||||||||||||| Sbjct: 1664909 ctcccgccgccggccgctgc 1664928 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 ctcccgccgccggccgctgc 222 |||||||||||||||||||| Sbjct: 1602941 ctcccgccgccggccgctgc 1602922
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ctcctcccgccgccggccgc 219 |||||||||||||||||||| Sbjct: 17975550 ctcctcccgccgccggccgc 17975569 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gccggccgctgccgtcgacg 230 |||||||||||||||||||| Sbjct: 13966252 gccggccgctgccgtcgacg 13966233
>dbj|AB194710.1| Gallus gallus ChTL1A mRNA for TL1A, complete cds Length = 1461 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 gctggccgggctgctgctggcgct 201 |||||||| ||||||||||||||| Sbjct: 138 gctggccgtgctgctgctggcgct 161
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gcgctcctcccgccgccggc 216 |||||||||||||||||||| Sbjct: 4601220 gcgctcctcccgccgccggc 4601239
>emb|BX930081.1| Gallus gallus finished cDNA, clone ChEST1015i24 Length = 1103 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 gctggccgggctgctgctggcgct 201 |||||||| ||||||||||||||| Sbjct: 143 gctggccgtgctgctgctggcgct 166
>gb|AE004479.1| Pseudomonas aeruginosa PAO1, section 40 of 529 of the complete genome Length = 13987 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 172 cctcgcgctggccgggctgctgctggcg 199 |||||||||| |||||||||||||||| Sbjct: 6482 cctcgcgctgtacgggctgctgctggcg 6509
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gtcgacgtccaggcggtgct 243 |||||||||||||||||||| Sbjct: 610749 gtcgacgtccaggcggtgct 610730
>ref|NM_001001233.1| Xenopus tropicalis hypothetical protein MGC69473 (MGC69473), mRNA Length = 2186 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 tggccgggctgctgctggcg 199 |||||||||||||||||||| Sbjct: 580 tggccgggctgctgctggcg 561
>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14 Length = 150022 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ctcctcccgccgccggccgc 219 |||||||||||||||||||| Sbjct: 2791 ctcctcccgccgccggccgc 2810
>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0520B06 Length = 142667 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ctcctcccgccgccggccgc 219 |||||||||||||||||||| Sbjct: 95385 ctcctcccgccgccggccgc 95404
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1007_D04 Length = 125503 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ctcccgccgccggccgctgc 222 |||||||||||||||||||| Sbjct: 102012 ctcccgccgccggccgctgc 102031 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 ctcccgccgccggccgctgc 222 |||||||||||||||||||| Sbjct: 40044 ctcccgccgccggccgctgc 40025
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0504A05 Length = 148360 Score = 40.1 bits (20), Expect = 4.6 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 201 tcctcccgccgccggccgctgccgtcgacgtccagg 236 ||||||||||||| ||||| |||| ||||||||||| Sbjct: 64700 tcctcccgccgcc-gccgccgccgacgacgtccagg 64666
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cgcgctggccgggctgctgc 194 |||||||||||||||||||| Sbjct: 1007585 cgcgctggccgggctgctgc 1007604 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 tcgcgctggccgggctgctgctgg 197 |||||||| ||||||||||||||| Sbjct: 643770 tcgcgctgaccgggctgctgctgg 643793
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gccggccgctgccgtcgacg 230 |||||||||||||||||||| Sbjct: 126554 gccggccgctgccgtcgacg 126535
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gccggccgctgccgtcgacg 230 |||||||||||||||||||| Sbjct: 41997 gccggccgctgccgtcgacg 41978
>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1613_G04 Length = 135357 Score = 40.1 bits (20), Expect = 4.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 206 ccgccgccg-gccgctgccgtcgacgtc 232 ||||||||| |||||||||||||||||| Sbjct: 103996 ccgccgccgcgccgctgccgtcgacgtc 104023
>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487H05 Length = 176057 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 cccgccgccggccgctgccgtcgacgtc 232 ||||||||| ||||||||||||| |||| Sbjct: 121947 cccgccgcccgccgctgccgtcgtcgtc 121920
>gb|AE005002.1| Halobacterium sp. NRC-1 section 33 of 170 of the complete genome Length = 11214 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgacgtccaggcggtgctcg 245 |||||||||||||||||||| Sbjct: 6038 cgacgtccaggcggtgctcg 6019
>gb|AY954626.1| Gallus gallus vascular endothelial growth inhibitor (TNFSF15) mRNA, partial cds Length = 624 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 gctggccgggctgctgctggcgct 201 |||||||| ||||||||||||||| Sbjct: 18 gctggccgtgctgctgctggcgct 41
>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_H02 Length = 117860 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgccgccggccgctgccgtcgacg 230 ||||||||||||||| |||||||| Sbjct: 46514 cgccgccggccgctggcgtcgacg 46537
>dbj|AK120571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134F16, full insert sequence Length = 715 Score = 40.1 bits (20), Expect = 4.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 206 ccgccgccg-gccgctgccgtcgacgtc 232 ||||||||| |||||||||||||||||| Sbjct: 517 ccgccgccgcgccgctgccgtcgacgtc 544
>dbj|AK109961.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-B07, full insert sequence Length = 2777 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 187 gctgctgctggcgctcctcccgccgccg 214 |||||||||||||||| | ||||||||| Sbjct: 2291 gctgctgctggcgctcgtaccgccgccg 2318
>dbj|AK066535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068C11, full insert sequence Length = 914 Score = 40.1 bits (20), Expect = 4.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 206 ccgccgccg-gccgctgccgtcgacgtc 232 ||||||||| |||||||||||||||||| Sbjct: 689 ccgccgccgcgccgctgccgtcgacgtc 716
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gctggccgggctgctgctgg 197 |||||||||||||||||||| Sbjct: 1449506 gctggccgggctgctgctgg 1449487
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ccgccggccgctgccgtcga 228 |||||||||||||||||||| Sbjct: 4783999 ccgccggccgctgccgtcga 4783980
>gb|AC174452.2| Mus musculus BAC clone RP23-113E17 from chromosome 10, complete sequence Length = 229159 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 162 gcctcgtcctcctcgcgctggccgggctgctg 193 |||||||||||| ||||| | ||||||||||| Sbjct: 112474 gcctcgtcctccacgcgcagcccgggctgctg 112505
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cgctcacgctgctcgccgtg 343 |||||||||||||||||||| Sbjct: 2538497 cgctcacgctgctcgccgtg 2538516
>gb|AC132232.6| Mus musculus BAC clone RP24-489N16 from chromosome 10, complete sequence Length = 166451 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 162 gcctcgtcctcctcgcgctggccgggctgctg 193 |||||||||||| ||||| | ||||||||||| Sbjct: 158998 gcctcgtcctccacgcgcagcccgggctgctg 159029
>gb|L35530.1|HALHSP70A Halobacterium cutirubrum (clone 5) heat shock protein 70 (dnaK) gene, complete cds Length = 1947 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cgacgtccaggcggtgctcg 245 |||||||||||||||||||| Sbjct: 1686 cgacgtccaggcggtgctcg 1705
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ctctagcggagctgctggtg 115 |||||||||||||||||||| Sbjct: 4204765 ctctagcggagctgctggtg 4204746
>gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome Length = 184427 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggccgggcggtcctcgctca 329 |||||||||||||||||||| Sbjct: 124534 ggccgggcggtcctcgctca 124515
>emb|AJ866919.1| Gallus gallus mRNA for SCO-spondin (sco-spondin gene) Length = 15892 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 ggtgctctgctcccggcggcacgg 135 ||||| |||||||||||||||||| Sbjct: 5814 ggtgcactgctcccggcggcacgg 5791
>emb|AJ937762.1| Uncultured gamma proteobacterium fosmid clone b1bcf1.1.c04 Length = 38209 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cgacgtccaggcggtgctcg 245 |||||||||||||||||||| Sbjct: 23864 cgacgtccaggcggtgctcg 23883 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,819,011 Number of Sequences: 3902068 Number of extensions: 2819011 Number of successful extensions: 81198 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 76917 Number of HSP's gapped (non-prelim): 4287 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
