ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast39f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
2dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
3dbj|AK099750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
4dbj|AK061802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
5gb|AC113081.8| Mus musculus chromosome 9, clone RP23-291B23, com... 44 0.36
6gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome... 44 0.36
7gb|AC151579.2| Mus musculus BAC clone RP23-191P7 from 1, complet... 44 0.36
8ref|NM_190931.1| Oryza sativa (japonica cultivar-group), predic... 42 1.4
9ref|XM_477714.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
10gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
11gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom... 42 1.4
12gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.4
13gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 gen... 42 1.4
14gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.4
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19gb|AC008747.5|AC008747 Homo sapiens chromosome 19 clone CTD-2588... 42 1.4
20dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.4
23dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
24dbj|AP004349.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
25dbj|AK109882.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
26emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 1.4
27gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.4
28gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
30ref|NM_197794.1| Oryza sativa (japonica cultivar-group) putative... 40 5.6
31ref|NM_196101.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.6
32gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.6
33gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.6
34gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence 40 5.6
35gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.6
36ref|XM_709618.1| Candida albicans SC5314 hypothetical protein (C... 40 5.6
37gb|DQ356948.1| Crocodilepox virus, complete genome 40 5.6
38gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.6
39gb|AC121786.3| Mus musculus BAC clone RP23-387F9 from chromosome... 40 5.6
40emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52),... 40 5.6
41gb|AE008760.1| Salmonella typhimurium LT2, section 64 of 220 of ... 40 5.6
42emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.6
43emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 5.6
44emb|AJ224978.1|STY224978 Salmonella typhimurium, Salmonella Path... 40 5.6
45tpg|BK000764.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M178,... 40 5.6
46gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.6
47gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 40 5.6
48gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 gen... 40 5.6
49gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.6
50dbj|AK157328.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.6
51gb|AF282268.1|AF282268 Salmonella enterica serovar Typhimurium s... 40 5.6
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
53gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
54dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.6
55ref|XM_213886.3| PREDICTED: Rattus norvegicus PCTAIRE-motif prot... 40 5.6
56gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
57gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 5.6
58dbj|AK109895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
59dbj|AK063394.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
60gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 5.6
61gb|AY578070.1| Salmonella enterica subsp. salamae tetrathionate ... 40 5.6
62gb|AY578069.1| Salmonella enterica subsp. diarizonae tetrathiona... 40 5.6
63gb|AY578067.1| Salmonella enterica subsp. arizonae tetrathionate... 40 5.6
64gb|AY578065.1| Salmonella enterica subsp. indica tetrathionate s... 40 5.6
65gb|AY578064.1| Salmonella enterica subsp. enterica serovar Typhi... 40 5.6
66gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 5.6
67gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.6
68gb|AY894891.1| Mus musculus membrane-associated DHHC5 zinc finge... 40 5.6
69emb|AL929079.14| Mouse DNA sequence from clone RP23-387F9 on chr... 40 5.6
70emb|AL591865.8| Mouse DNA sequence from clone RP23-14G21 on chro... 40 5.6
71gb|M11854.1|HS2EXO HSV-2 (HG-52) alkaline exonuclease gene, 0.17... 40 5.6 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                           
Query: 360     ctcaaacccaaagtgttcagcgcaagtcttcaaccgtgactgtcaaacgatctgatccca 419
               |||| |||||||||| |||||| || |||||||| |  || |||||||||||||| ||||
Sbjct: 9996682 ctcagacccaaagtgctcagcggaaatcttcaactgcaaccgtcaaacgatctgacccca 9996741

                
Query: 420     a 420
               |
Sbjct: 9996742 a 9996742



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                           
Query: 269     aggttcacaatttcagagaactcaagtgaacggcatctcatttgaacgggaagtttctac 328
               ||||||||||||||||| | ||||||  | | ||||||||||| || ||||||| ||| |
Sbjct: 9995109 aggttcacaatttcagacatctcaagctagctgcatctcatttaaaagggaagtgtctgc 9995168

                    
Query: 329     taaag 333
               |||||
Sbjct: 9995169 taaag 9995173
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>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0413A11
          Length = 188440

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 360   ctcaaacccaaagtgttcagcgcaagtcttcaaccgtgactgtcaaacgatctgatccca 419
             |||| |||||||||| |||||| || |||||||| |  || |||||||||||||| ||||
Sbjct: 71375 ctcagacccaaagtgctcagcggaaatcttcaactgcaaccgtcaaacgatctgacccca 71434

              
Query: 420   a 420
             |
Sbjct: 71435 a 71435



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 269   aggttcacaatttcagagaactcaagtgaacggcatctcatttgaacgggaagtttctac 328
             ||||||||||||||||| | ||||||  | | ||||||||||| || ||||||| ||| |
Sbjct: 69802 aggttcacaatttcagacatctcaagctagctgcatctcatttaaaagggaagtgtctgc 69861

                  
Query: 329   taaag 333
             |||||
Sbjct: 69862 taaag 69866
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>dbj|AK099750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A18, full
            insert sequence
          Length = 2418

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                        
Query: 360  ctcaaacccaaagtgttcagcgcaagtcttcaaccgtgactgtcaaacgatctgatccca 419
            |||| |||||||||| |||||| || |||||||| |  || |||||||||||||| ||||
Sbjct: 1883 ctcagacccaaagtgctcagcggaaatcttcaactgcaaccgtcaaacgatctgacccca 1942

             
Query: 420  a 420
            |
Sbjct: 1943 a 1943



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 269 aggttcacaatttcagagaactcaagtgaacggcatctcatttgaacgggaagtttctac 328
           ||||||||||||||||| | ||||||  | | ||||||||||| || ||||||| ||| |
Sbjct: 309 aggttcacaatttcagacatctcaagctagctgcatctcatttaaaagggaagtgtctgc 368

                
Query: 329 taaag 333
           |||||
Sbjct: 369 taaag 373
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>dbj|AK061802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H11, full
           insert sequence
          Length = 1321

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 360 ctcaaacccaaagtgttcagcgcaagtcttcaaccgtgactgtcaaacgatctgatccca 419
           |||| |||||||||| |||||| || |||||||| |  || |||||||||||||| ||||
Sbjct: 786 ctcagacccaaagtgctcagcggaaatcttcaactgcaaccgtcaaacgatctgacccca 845

            
Query: 420 a 420
           |
Sbjct: 846 a 846
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>gb|AC113081.8| Mus musculus chromosome 9, clone RP23-291B23, complete sequence
          Length = 217420

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 273    tcacaatttcagagaactcaag 294
              ||||||||||||||||||||||
Sbjct: 102539 tcacaatttcagagaactcaag 102560
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>gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome 1, complete sequence
          Length = 176143

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Minus

                                            
Query: 53     cctctccg-gccgccgccgcgcgctcccga 81
              |||||||| |||||||||||||||||||||
Sbjct: 175860 cctctccgcgccgccgccgcgcgctcccga 175831
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>gb|AC151579.2| Mus musculus BAC clone RP23-191P7 from 1, complete sequence
          Length = 204175

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                            
Query: 53     cctctccg-gccgccgccgcgcgctcccga 81
              |||||||| |||||||||||||||||||||
Sbjct: 159971 cctctccgcgccgccgccgcgcgctcccga 160000
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>ref|NM_190931.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 56   ctccggccgccgccgcgcgctcccg 80
            ||||| |||||||||||||||||||
Sbjct: 1425 ctccgcccgccgccgcgcgctcccg 1449
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>ref|XM_477714.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 117 cgccgccgacgcaggagaccggacg 141
           ||||||||||| |||||||||||||
Sbjct: 222 cgccgccgacggaggagaccggacg 198
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>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0045P14, complete sequence
          Length = 121894

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   ggctccgccgcgcgcgccgcc 123
             |||||||||||||||||||||
Sbjct: 61380 ggctccgccgcgcgcgccgcc 61400
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>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0096G08 map E1363S, complete sequence
          Length = 140681

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 49   tccacctctccggccgccgcc 69
            |||||||||||||||||||||
Sbjct: 5626 tccacctctccggccgccgcc 5646
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 108     cgccgcgcgcgccgccgacgc 128
               |||||||||||||||||||||
Sbjct: 2784368 cgccgcgcgcgccgccgacgc 2784388
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>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete
             sequence
          Length = 137366

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    tccacctctccggccgccgcc 69
             |||||||||||||||||||||
Sbjct: 32924 tccacctctccggccgccgcc 32904
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 108     cgccgcgcgcgccgccgacgc 128
               |||||||||||||||||||||
Sbjct: 1515689 cgccgcgcgcgccgccgacgc 1515669
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 103      ggctccgccgcgcgcgccgcc 123
                |||||||||||||||||||||
Sbjct: 10871860 ggctccgccgcgcgcgccgcc 10871880
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 49       tccacctctccggccgccgcc 69
                |||||||||||||||||||||
Sbjct: 19744588 tccacctctccggccgccgcc 19744608



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 105      ctccgccgcgcgcgccgccgacgc 128
                ||||||||||||| ||||||||||
Sbjct: 21916147 ctccgccgcgcgctccgccgacgc 21916124



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 56       ctccggccgccgccgcgcgc 75
                ||||||||||||||||||||
Sbjct: 11087968 ctccggccgccgccgcgcgc 11087987
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 117      cgccgccgacgcaggagaccggacg 141
                ||||||||||| |||||||||||||
Sbjct: 13433039 cgccgccgacggaggagaccggacg 13433063
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 56       ctccggccgccgccgcgcgctcccg 80
                ||||| |||||||||||||||||||
Sbjct: 33911186 ctccgcccgccgccgcgcgctcccg 33911210
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>gb|AC008747.5|AC008747 Homo sapiens chromosome 19 clone CTD-2588C8, complete sequence
          Length = 159597

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   ctccgccgcgcgcgccgccga 125
             |||||||||||||||||||||
Sbjct: 80214 ctccgccgcgcgcgccgccga 80234
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>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0691E06
          Length = 166497

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 56     ctccggccgccgccgcgcgctcccg 80
              ||||| |||||||||||||||||||
Sbjct: 150233 ctccgcccgccgccgcgcgctcccg 150257
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>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0003D09
          Length = 161970

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 56    ctccggccgccgccgcgcgctcccg 80
             ||||| |||||||||||||||||||
Sbjct: 42629 ctccgcccgccgccgcgcgctcccg 42653
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 112     gcgcgcgccgccgacgcagga 132
               |||||||||||||||||||||
Sbjct: 5881251 gcgcgcgccgccgacgcagga 5881271



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 58      ccggccgccgccgcgcgctcccga 81
               |||||||||||||||||| |||||
Sbjct: 3188809 ccggccgccgccgcgcgcccccga 3188786
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>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1123E10
          Length = 134641

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 117   cgccgccgacgcaggagaccggacg 141
             ||||||||||| |||||||||||||
Sbjct: 12722 cgccgccgacggaggagaccggacg 12746
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>dbj|AP004349.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0684A03
          Length = 64705

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 117   cgccgccgacgcaggagaccggacg 141
             ||||||||||| |||||||||||||
Sbjct: 58798 cgccgccgacggaggagaccggacg 58822
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>dbj|AK109882.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D05, full
           insert sequence
          Length = 2714

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 ggctccgccgcgcgcgccgcc 123
           |||||||||||||||||||||
Sbjct: 403 ggctccgccgcgcgcgccgcc 423
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 114     gcgcgccgccgacgcaggaga 134
               |||||||||||||||||||||
Sbjct: 1592913 gcgcgccgccgacgcaggaga 1592893
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     ccggccgccgccgcgcgctcc 78
              |||||||||||||||||||||
Sbjct: 228921 ccggccgccgccgcgcgctcc 228941
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 49       tccacctctccggccgccgcc 69
                |||||||||||||||||||||
Sbjct: 19755864 tccacctctccggccgccgcc 19755884



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 105      ctccgccgcgcgcgccgccgacgc 128
                ||||||||||||| ||||||||||
Sbjct: 21927810 ctccgccgcgcgctccgccgacgc 21927787



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 56       ctccggccgccgccgcgcgc 75
                ||||||||||||||||||||
Sbjct: 11094408 ctccggccgccgccgcgcgc 11094427
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 103      ggctccgccgcgcgcgccgcc 123
                |||||||||||||||||||||
Sbjct: 10951049 ggctccgccgcgcgcgccgcc 10951069
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>ref|NM_197794.1| Oryza sativa (japonica cultivar-group) putative zinc finger protein
           (OSJNBa0057L21.22), mRNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 105 ctccgccgcgcgcgccgccgacgc 128
           ||||||||||||| ||||||||||
Sbjct: 306 ctccgccgcgcgctccgccgacgc 283
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>ref|NM_196101.1| Oryza sativa (japonica cultivar-group) hypothetical protein
          (OJ1003C07.10), mRNA
          Length = 207

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 56 ctccggccgccgccgcgcgc 75
          ||||||||||||||||||||
Sbjct: 98 ctccggccgccgccgcgcgc 79
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     ccgccgcgcgcgccgccgac 126
               ||||||||||||||||||||
Sbjct: 3016221 ccgccgcgcgcgccgccgac 3016202
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    cgccgcgcgcgccgccgacg 127
              ||||||||||||||||||||
Sbjct: 598736 cgccgcgcgcgccgccgacg 598717
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>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     gccgccgccgcgcgctcccg 80
              ||||||||||||||||||||
Sbjct: 154465 gccgccgccgcgcgctcccg 154484
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     cgccgcgcgcgccgccgacg 127
               ||||||||||||||||||||
Sbjct: 3175977 cgccgcgcgcgccgccgacg 3175996
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>ref|XM_709618.1| Candida albicans SC5314 hypothetical protein (CaO19.10672), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 265 tccaaggttcacaatttcagagaa 288
           ||||||| ||||||||||||||||
Sbjct: 370 tccaaggatcacaatttcagagaa 393
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>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    gccgcgcgcgccgccgacgc 128
              ||||||||||||||||||||
Sbjct: 164472 gccgcgcgcgccgccgacgc 164453
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     cgccgccgacgcaggagacc 136
               ||||||||||||||||||||
Sbjct: 8370307 cgccgccgacgcaggagacc 8370326
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>gb|AC121786.3| Mus musculus BAC clone RP23-387F9 from chromosome 2, complete sequence
          Length = 208632

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    ccgccgccgcgcgctcccga 81
             ||||||||||||||||||||
Sbjct: 58713 ccgccgccgcgcgctcccga 58694
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>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome
          Length = 154746

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   cccgcgtccccggccctctc 162
             ||||||||||||||||||||
Sbjct: 26653 cccgcgtccccggccctctc 26634
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>gb|AE008760.1| Salmonella typhimurium LT2, section 64 of 220 of the complete genome
          Length = 21723

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   cgcgcgccgccgacgcagga 132
             ||||||||||||||||||||
Sbjct: 18552 cgcgcgccgccgacgcagga 18571
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     cgccgcgcgcgccgccgacg 127
               ||||||||||||||||||||
Sbjct: 2905857 cgccgcgcgcgccgccgacg 2905876
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>emb|AL627271.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 7/20
          Length = 233050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   cgcgcgccgccgacgcagga 132
             ||||||||||||||||||||
Sbjct: 83043 cgcgcgccgccgacgcagga 83024
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>emb|AJ224978.1|STY224978 Salmonella typhimurium, Salmonella Pathogenicity Island 2 (SPI2)
            genes, ttr gene cluster
          Length = 12121

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  cgcgcgccgccgacgcagga 132
            ||||||||||||||||||||
Sbjct: 5412 cgcgcgccgccgacgcagga 5393
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>tpg|BK000764.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M178, complete sequence
          Length = 1139

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  ctccggccgccgccgcgcgc 75
           ||||||||||||||||||||
Sbjct: 542 ctccggccgccgccgcgcgc 523
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 107  ccgccgcgcgcgccgccgac 126
            ||||||||||||||||||||
Sbjct: 9165 ccgccgcgcgcgccgccgac 9146
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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctccggccgccgccgcgcgc 75
             ||||||||||||||||||||
Sbjct: 71089 ctccggccgccgccgcgcgc 71070
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>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
             sequence
          Length = 183046

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   ctccgccgcgcgcgccgccgacgc 128
             ||||||||||||| ||||||||||
Sbjct: 92174 ctccgccgcgcgctccgccgacgc 92197
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     aggagaccggacgccccgcg 148
               ||||||||||||||||||||
Sbjct: 2519318 aggagaccggacgccccgcg 2519299
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>dbj|AK157328.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830211F18 product:unclassifiable, full
           insert sequence
          Length = 1447

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 62  ccgccgccgcgcgctcccga 81
           ||||||||||||||||||||
Sbjct: 95  ccgccgccgcgcgctcccga 114
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>gb|AF282268.1|AF282268 Salmonella enterica serovar Typhimurium strain LT2 tetrathionate
            reductase response regulator (ttrR), sensor-kinase
            (ttrS), subunit B (ttrB), subunit C (ttrC), and subunit A
            (ttrA), and ribokinase-like protein (rkh) genes, complete
            cds; and ntt gene, partial cds
          Length = 9486

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  cgcgcgccgccgacgcagga 132
            ||||||||||||||||||||
Sbjct: 3103 cgcgcgccgccgacgcagga 3084
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     cgccgccgacgcaggagacc 136
               ||||||||||||||||||||
Sbjct: 8368142 cgccgccgacgcaggagacc 8368161
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>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11,
              complete sequence
          Length = 126040

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    cgccgccgacgcaggagacc 136
              ||||||||||||||||||||
Sbjct: 107563 cgccgccgacgcaggagacc 107582
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     ctccggccgccgccgcgcgc 75
              ||||||||||||||||||||
Sbjct: 779290 ctccggccgccgccgcgcgc 779271
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>ref|XM_213886.3| PREDICTED: Rattus norvegicus PCTAIRE-motif protein kinase 3
           (predicted) (Pctk3_predicted), mRNA
          Length = 2711

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 53  cctctccggccgccgccgcg 72
           ||||||||||||||||||||
Sbjct: 832 cctctccggccgccgccgcg 813
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 109     gccgcgcgcgccgccgacgc 128
               ||||||||||||||||||||
Sbjct: 2502242 gccgcgcgcgccgccgacgc 2502261
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 113     cgcgcgccgccgacgcagga 132
               ||||||||||||||||||||
Sbjct: 1541677 cgcgcgccgccgacgcagga 1541658
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>dbj|AK109895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F01, full
           insert sequence
          Length = 1562

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 105 ctccgccgcgcgcgccgccgacgc 128
           ||||||||||||| ||||||||||
Sbjct: 416 ctccgccgcgcgctccgccgacgc 393
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>dbj|AK063394.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H06, full
           insert sequence
          Length = 2476

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 cgccgccgacgcaggagacc 136
           ||||||||||||||||||||
Sbjct: 556 cgccgccgacgcaggagacc 575
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 113     cgcgcgccgccgacgcagga 132
               ||||||||||||||||||||
Sbjct: 1325088 cgcgcgccgccgacgcagga 1325107
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>gb|AY578070.1| Salmonella enterica subsp. salamae tetrathionate subunit B (ttrB)
           gene, partial cds; tetrathionate reductase subunit C
           (ttrC) gene, complete cds; and tetrathionate subunit A
           (ttrA) gene, partial cds
          Length = 1372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cgcgcgccgccgacgcagga 132
           ||||||||||||||||||||
Sbjct: 66  cgcgcgccgccgacgcagga 47
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>gb|AY578069.1| Salmonella enterica subsp. diarizonae tetrathionate subunit B
           (ttrB) gene, partial cds; tetrathionate reductase
           subunit C (ttrC) gene, complete cds; and tetrathionate
           subunit A (ttrA) gene, partial cds
          Length = 1372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cgcgcgccgccgacgcagga 132
           ||||||||||||||||||||
Sbjct: 66  cgcgcgccgccgacgcagga 47
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>gb|AY578067.1| Salmonella enterica subsp. arizonae tetrathionate subunit B (ttrB)
           gene, partial cds; tetrathionate reductase subunit C
           (ttrC) gene, complete cds; and tetrathionate subunit A
           (ttrA) gene, partial cds
          Length = 1372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cgcgcgccgccgacgcagga 132
           ||||||||||||||||||||
Sbjct: 66  cgcgcgccgccgacgcagga 47
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>gb|AY578065.1| Salmonella enterica subsp. indica tetrathionate subunit B (ttrB)
           gene, partial cds; tetrathionate reductase subunit C
           (ttrC) gene, complete cds; and tetrathionate subunit A
           (ttrA) gene, partial cds
          Length = 1372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cgcgcgccgccgacgcagga 132
           ||||||||||||||||||||
Sbjct: 66  cgcgcgccgccgacgcagga 47
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>gb|AY578064.1| Salmonella enterica subsp. enterica serovar Typhimurium
           tetrathionate subunit B (ttrB) gene, partial cds;
           tetrathionate reductase subunit C (ttrC) gene, complete
           cds; and tetrathionate subunit A (ttrA) gene, partial
           cds
          Length = 1372

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 cgcgcgccgccgacgcagga 132
           ||||||||||||||||||||
Sbjct: 66  cgcgcgccgccgacgcagga 47
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 113     cgcgcgccgccgacgcagga 132
               ||||||||||||||||||||
Sbjct: 1508364 cgcgcgccgccgacgcagga 1508383
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 61      gccgccgccgcgcgctcccg 80
               ||||||||||||||||||||
Sbjct: 1645451 gccgccgccgcgcgctcccg 1645470
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>gb|AY894891.1| Mus musculus membrane-associated DHHC5 zinc finger protein mRNA,
          complete cds
          Length = 4534

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 62 ccgccgccgcgcgctcccga 81
          ||||||||||||||||||||
Sbjct: 50 ccgccgccgcgcgctcccga 31
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>emb|AL929079.14| Mouse DNA sequence from clone RP23-387F9 on chromosome 2, complete
              sequence
          Length = 120316

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     ccgccgccgcgcgctcccga 81
              ||||||||||||||||||||
Sbjct: 115776 ccgccgccgcgcgctcccga 115795
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>emb|AL591865.8| Mouse DNA sequence from clone RP23-14G21 on chromosome 5, complete
             sequence
          Length = 251952

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 268   aaggttcacaatttcagagaactc 291
             ||||| ||||||||||||||||||
Sbjct: 94717 aaggtgcacaatttcagagaactc 94740
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>gb|M11854.1|HS2EXO HSV-2 (HG-52) alkaline exonuclease gene, 0.177-0.160 map units
          Length = 2474

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 cccgcgtccccggccctctc 162
           ||||||||||||||||||||
Sbjct: 569 cccgcgtccccggccctctc 588


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,176,364
Number of Sequences: 3902068
Number of extensions: 3176364
Number of successful extensions: 72268
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67314
Number of HSP's gapped (non-prelim): 4954
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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