ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast39f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STAD_SPIOL (P28645) Acyl-[acyl-carrier-protein] desaturase, chlo... 30 1.1
2GRPE2_PONPY (Q5R435) GrpE protein homolog 2, mitochondrial precu... 30 1.5
3GRPE2_HUMAN (Q8TAA5) GrpE protein homolog 2, mitochondrial precu... 30 1.5
4Y1699_PYRHO (O59362) UPF0095 protein PH1699 28 4.3
5UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-... 28 5.6
6STAD_SIMCH (Q01753) Acyl-[acyl-carrier-protein] desaturase, chlo... 28 7.3

>STAD_SPIOL (P28645) Acyl-[acyl-carrier-protein] desaturase, chloroplast|
           precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase)
          Length = 399

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 248 VPREQAEMVQSLNGWVAENMLPLLSP 325
           +P+E+ E+ +SL GW  EN+L  L P
Sbjct: 68  MPQEKIEIFKSLEGWAEENLLVHLKP 93



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>GRPE2_PONPY (Q5R435) GrpE protein homolog 2, mitochondrial precursor|
           (Mt-GrpE#2)
          Length = 225

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 172 QTASRVCRTEHPPEARGPPRARVAL 98
           +TA   CR+E PP+  GPP A  AL
Sbjct: 38  RTAGEDCRSEDPPDELGPPLAERAL 62



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>GRPE2_HUMAN (Q8TAA5) GrpE protein homolog 2, mitochondrial precursor|
           (Mt-GrpE#2)
          Length = 225

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 172 QTASRVCRTEHPPEARGPPRARVAL 98
           +TA   CR+E PP+  GPP A  AL
Sbjct: 38  RTAGEDCRSEDPPDELGPPLAERAL 62



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>Y1699_PYRHO (O59362) UPF0095 protein PH1699|
          Length = 447

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 117 PEPASLLLEKKKQIFADVHAAGPVFAID 34
           P+P +LLL++ K I A+VH    + AI+
Sbjct: 368 PDPVALLLDENKNIIAEVHTRDLLNAIE 395



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>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 2)
          Length = 3658

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 227  IDVGFAPVPREQAEMVQSLNGWVAENMLPL 316
            + +G  PVPRE    V++L   V E +LP+
Sbjct: 1192 LSIGLFPVPREPETFVRNLQSQVLEVILPI 1221



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>STAD_SIMCH (Q01753) Acyl-[acyl-carrier-protein] desaturase, chloroplast|
           precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase)
          Length = 398

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 248 VPREQAEMVQSLNGWVAENMLPLLSP 325
           +P ++ E+ +SL GW  EN+L  L P
Sbjct: 67  MPPQKIEIFKSLEGWAEENVLVHLKP 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,990,616
Number of Sequences: 219361
Number of extensions: 509930
Number of successful extensions: 1651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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