ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast39f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor 30 1.5
2SGO1_KLULA (Q6CXI9) Shugoshin 28 7.3

>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor|
          Length = 250

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 247 APSKISSDENLTRVIDSEIECAVESE 324
           A  +ISS++ L RVIDSEI  A++S+
Sbjct: 55  AIDRISSEQTLIRVIDSEINSALQSD 80



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>SGO1_KLULA (Q6CXI9) Shugoshin|
          Length = 594

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 338 CTEPSSDSTAHSISESMTRVRFSSEEILEGAAGDCDDRK 222
           CT PS     HS+    T+++   ++I+     D DD K
Sbjct: 336 CTIPSQSKIKHSMKHPRTKLKGGQDDIMPHTDYDKDDEK 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.304    0.120    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,166,803
Number of Sequences: 219361
Number of extensions: 228812
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
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