| Clone Name | bast39f03 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor | 30 | 1.5 | 2 | SGO1_KLULA (Q6CXI9) Shugoshin | 28 | 7.3 |
|---|
>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor| Length = 250 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = +1 Query: 247 APSKISSDENLTRVIDSEIECAVESE 324 A +ISS++ L RVIDSEI A++S+ Sbjct: 55 AIDRISSEQTLIRVIDSEINSALQSD 80
>SGO1_KLULA (Q6CXI9) Shugoshin| Length = 594 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = -2 Query: 338 CTEPSSDSTAHSISESMTRVRFSSEEILEGAAGDCDDRK 222 CT PS HS+ T+++ ++I+ D DD K Sbjct: 336 CTIPSQSKIKHSMKHPRTKLKGGQDDIMPHTDYDKDDEK 374 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.304 0.120 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,166,803 Number of Sequences: 219361 Number of extensions: 228812 Number of successful extensions: 491 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 484 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 491 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits)