ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast39e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
2dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
3dbj|AK068956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
4dbj|AK058743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
5gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.2
6gb|AC116739.13| Mus musculus chromosome 17, clone RP23-435B24, c... 40 4.2
7gb|AC149571.3| Rhinolophus ferrumequinum clone VMRC7-305L23, com... 40 4.2
8ref|XM_723549.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.2
9gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 4.2
10gb|AC104518.5| Mus Musculus Strain 129S6/SvEvTac chromosome 17 B... 40 4.2
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
12gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 4.2
13gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 40 4.2
14dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.2
15gb|AC012527.7| Homo sapiens chromosome 15, clone RP11-44J20, com... 40 4.2
16gb|AC158468.2| Postia placenta clone JGIACWS-5B5, complete sequence 40 4.2
17emb|AL831719.6| Mouse DNA sequence from clone RP23-166I8 on chro... 40 4.2
18gb|AC006367.3|AC006367 Homo sapiens BAC clone RP11-167L9 from 7p... 40 4.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/33 (93%), Gaps = 2/33 (6%)
 Strand = Plus / Minus

                                                 
Query: 178      ccccgtcgatccggccgccgcgtggggtttggt 210
                ||||||||||||||||||  |||||||||||||
Sbjct: 29845166 ccccgtcgatccggccgc--cgtggggtttggt 29845136
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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481E08
          Length = 171965

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/33 (93%), Gaps = 2/33 (6%)
 Strand = Plus / Minus

                                              
Query: 178   ccccgtcgatccggccgccgcgtggggtttggt 210
             ||||||||||||||||||  |||||||||||||
Sbjct: 40679 ccccgtcgatccggccgc--cgtggggtttggt 40649
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>dbj|AK068956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002D18, full
           insert sequence
          Length = 1358

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/33 (93%), Gaps = 2/33 (6%)
 Strand = Plus / Plus

                                            
Query: 178 ccccgtcgatccggccgccgcgtggggtttggt 210
           ||||||||||||||||||  |||||||||||||
Sbjct: 133 ccccgtcgatccggccgc--cgtggggtttggt 163
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>dbj|AK058743.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G10, full
           insert sequence
          Length = 1308

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/33 (93%), Gaps = 2/33 (6%)
 Strand = Plus / Plus

                                            
Query: 178 ccccgtcgatccggccgccgcgtggggtttggt 210
           ||||||||||||||||||  |||||||||||||
Sbjct: 105 ccccgtcgatccggccgc--cgtggggtttggt 135
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>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0115F21,
              complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    cgcgtggggtttggtttggg 215
              ||||||||||||||||||||
Sbjct: 121454 cgcgtggggtttggtttggg 121473
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>gb|AC116739.13| Mus musculus chromosome 17, clone RP23-435B24, complete sequence
          Length = 222382

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    agcagaaagaccaaaaccaa 48
             ||||||||||||||||||||
Sbjct: 73397 agcagaaagaccaaaaccaa 73416
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>gb|AC149571.3| Rhinolophus ferrumequinum clone VMRC7-305L23, complete sequence
          Length = 190426

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    ctggattcccgggtccctcc 271
              ||||||||||||||||||||
Sbjct: 178894 ctggattcccgggtccctcc 178875
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>ref|XM_723549.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07696)
           partial mRNA
          Length = 337

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  ccaagccaagaccgccggcc 64
           ||||||||||||||||||||
Sbjct: 158 ccaagccaagaccgccggcc 177
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ccgtcgatccggccgccgcg 199
              ||||||||||||||||||||
Sbjct: 477325 ccgtcgatccggccgccgcg 477344
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>gb|AC104518.5| Mus Musculus Strain 129S6/SvEvTac chromosome 17 BAC, RP22-187D17,
              Complete Sequence, complete sequence
          Length = 163367

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     agcagaaagaccaaaaccaa 48
              ||||||||||||||||||||
Sbjct: 141009 agcagaaagaccaaaaccaa 140990
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     cgcgtggggtttggtttggg 215
               ||||||||||||||||||||
Sbjct: 6558020 cgcgtggggtttggtttggg 6558039
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      ccaagccaagaccgccggcc 64
               ||||||||||||||||||||
Sbjct: 1514549 ccaagccaagaccgccggcc 1514530
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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    ctggattcccgggtccctcc 271
              ||||||||||||||||||||
Sbjct: 794738 ctggattcccgggtccctcc 794719
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      ccccgaccaccgccggcacc 89
               ||||||||||||||||||||
Sbjct: 1432396 ccccgaccaccgccggcacc 1432415
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>gb|AC012527.7| Homo sapiens chromosome 15, clone RP11-44J20, complete sequence
          Length = 162955

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   gtggggagggtagggggatg 311
             ||||||||||||||||||||
Sbjct: 77934 gtggggagggtagggggatg 77953
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>gb|AC158468.2| Postia placenta clone JGIACWS-5B5, complete sequence
          Length = 36622

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   cgccgcgtccgcgctgaccg 174
             ||||||||||||||||||||
Sbjct: 11461 cgccgcgtccgcgctgaccg 11442
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>emb|AL831719.6| Mouse DNA sequence from clone RP23-166I8 on chromosome 4, complete
              sequence
          Length = 194025

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     aaagaccaaaaccaagccaa 53
              ||||||||||||||||||||
Sbjct: 150522 aaagaccaaaaccaagccaa 150541
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>gb|AC006367.3|AC006367 Homo sapiens BAC clone RP11-167L9 from 7p14-p15, complete sequence
          Length = 130469

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    gtggggagggtagggggatg 311
              ||||||||||||||||||||
Sbjct: 113221 gtggggagggtagggggatg 113202


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,316,675
Number of Sequences: 3902068
Number of extensions: 2316675
Number of successful extensions: 51345
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51061
Number of HSP's gapped (non-prelim): 284
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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