>ref|XM_470112.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1454

 Score =  109 bits (55), Expect = 3e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                       
Query: 132 tgctgccgttcgcggtgggcgcggcgccggcggggtgcgacgtcgggcagggcgagtggg 191
           ||||||||||||||||||| |||||||||| |||||||||||||||| | || |||||||
Sbjct: 137 tgctgccgttcgcggtgggggcggcgccggaggggtgcgacgtcggggaaggggagtggg 196

                              
Query: 192 tgtacgacgaggcggcgcg 210
           ||| |||||||||||||||
Sbjct: 197 tgttcgacgaggcggcgcg 215

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 3e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                            
Query: 132      tgctgccgttcgcggtgggcgcggcgccggcggggtgcgacgtcgggcagggcgagtggg 191
                ||||||||||||||||||| |||||||||| |||||||||||||||| | || |||||||
Sbjct: 34010668 tgctgccgttcgcggtgggggcggcgccggaggggtgcgacgtcggggaaggggagtggg 34010609

                                   
Query: 192      tgtacgacgaggcggcgcg 210
                ||| |||||||||||||||
Sbjct: 34010608 tgttcgacgaggcggcgcg 34010590



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 70/78 (89%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                            
Query: 136      gccgttcgcggtgggcgcggcgccggcgg---ggtgcgacgtcgggcagggcgagtgggt 192
                ||||||||||||||| |||||| ||||||   ||||||||||||||  ||| ||||||||
Sbjct: 34020855 gccgttcgcggtgggggcggcggcggcggcggggtgcgacgtcggggtgggggagtgggt 34020796

                                  
Query: 193      gtacgacgaggcggcgcg 210
                ||||||||||||||||||
Sbjct: 34020795 gtacgacgaggcggcgcg 34020778



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 187      gtgggtgtacgacgaggcggcg 208
                ||||||||||||||||||||||
Sbjct: 33988477 gtgggtgtacgacgaggcggcg 33988456

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 3e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                            
Query: 132      tgctgccgttcgcggtgggcgcggcgccggcggggtgcgacgtcgggcagggcgagtggg 191
                ||||||||||||||||||| |||||||||| |||||||||||||||| | || |||||||
Sbjct: 34101140 tgctgccgttcgcggtgggggcggcgccggaggggtgcgacgtcggggaaggggagtggg 34101081

                                   
Query: 192      tgtacgacgaggcggcgcg 210
                ||| |||||||||||||||
Sbjct: 34101080 tgttcgacgaggcggcgcg 34101062



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 70/78 (89%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                            
Query: 136      gccgttcgcggtgggcgcggcgccggcgg---ggtgcgacgtcgggcagggcgagtgggt 192
                ||||||||||||||| |||||| ||||||   ||||||||||||||  ||| ||||||||
Sbjct: 34111327 gccgttcgcggtgggggcggcggcggcggcggggtgcgacgtcggggtgggggagtgggt 34111268

                                  
Query: 193      gtacgacgaggcggcgcg 210
                ||||||||||||||||||
Sbjct: 34111267 gtacgacgaggcggcgcg 34111250



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 187      gtgggtgtacgacgaggcggcg 208
                ||||||||||||||||||||||
Sbjct: 34078949 gtgggtgtacgacgaggcggcg 34078928

>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score =  109 bits (55), Expect = 3e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                         
Query: 132   tgctgccgttcgcggtgggcgcggcgccggcggggtgcgacgtcgggcagggcgagtggg 191
             ||||||||||||||||||| |||||||||| |||||||||||||||| | || |||||||
Sbjct: 47023 tgctgccgttcgcggtgggggcggcgccggaggggtgcgacgtcggggaaggggagtggg 47082

                                
Query: 192   tgtacgacgaggcggcgcg 210
             ||| |||||||||||||||
Sbjct: 47083 tgttcgacgaggcggcgcg 47101



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 70/78 (89%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                         
Query: 136   gccgttcgcggtgggcgcggcgccggcgg---ggtgcgacgtcgggcagggcgagtgggt 192
             ||||||||||||||| |||||| ||||||   ||||||||||||||  ||| ||||||||
Sbjct: 36836 gccgttcgcggtgggggcggcggcggcggcggggtgcgacgtcggggtgggggagtgggt 36895

                               
Query: 193   gtacgacgaggcggcgcg 210
             ||||||||||||||||||
Sbjct: 36896 gtacgacgaggcggcgcg 36913



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 187   gtgggtgtacgacgaggcggcg 208
             ||||||||||||||||||||||
Sbjct: 69214 gtgggtgtacgacgaggcggcg 69235

>dbj|AK104541.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A10, full
           insert sequence
          Length = 1392

 Score =  109 bits (55), Expect = 3e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                       
Query: 132 tgctgccgttcgcggtgggcgcggcgccggcggggtgcgacgtcgggcagggcgagtggg 191
           ||||||||||||||||||| |||||||||| |||||||||||||||| | || |||||||
Sbjct: 122 tgctgccgttcgcggtgggggcggcgccggaggggtgcgacgtcggggaaggggagtggg 181

                              
Query: 192 tgtacgacgaggcggcgcg 210
           ||| |||||||||||||||
Sbjct: 182 tgttcgacgaggcggcgcg 200

>dbj|AK065071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K07, full
           insert sequence
          Length = 3436

 Score =  109 bits (55), Expect = 3e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                       
Query: 132 tgctgccgttcgcggtgggcgcggcgccggcggggtgcgacgtcgggcagggcgagtggg 191
           ||||||||||||||||||| |||||||||| |||||||||||||||| | || |||||||
Sbjct: 164 tgctgccgttcgcggtgggggcggcgccggaggggtgcgacgtcggggaaggggagtggg 223

                              
Query: 192 tgtacgacgaggcggcgcg 210
           ||| |||||||||||||||
Sbjct: 224 tgttcgacgaggcggcgcg 242

>dbj|AK061407.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A07, full
           insert sequence
          Length = 1437

 Score =  109 bits (55), Expect = 3e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                       
Query: 132 tgctgccgttcgcggtgggcgcggcgccggcggggtgcgacgtcgggcagggcgagtggg 191
           ||||||||||||||||||| |||||||||| |||||||||||||||| | || |||||||
Sbjct: 167 tgctgccgttcgcggtgggggcggcgccggaggggtgcgacgtcggggaaggggagtggg 226

                              
Query: 192 tgtacgacgaggcggcgcg 210
           ||| |||||||||||||||
Sbjct: 227 tgttcgacgaggcggcgcg 245

>ref|XM_470113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2012

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 70/78 (89%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                       
Query: 136 gccgttcgcggtgggcgcggcgccggcgg---ggtgcgacgtcgggcagggcgagtgggt 192
           ||||||||||||||| |||||| ||||||   ||||||||||||||  ||| ||||||||
Sbjct: 255 gccgttcgcggtgggggcggcggcggcggcggggtgcgacgtcggggtgggggagtgggt 314

                             
Query: 193 gtacgacgaggcggcgcg 210
           ||||||||||||||||||
Sbjct: 315 gtacgacgaggcggcgcg 332

>dbj|AK071479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093O16, full
           insert sequence
          Length = 2028

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 70/78 (89%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                       
Query: 136 gccgttcgcggtgggcgcggcgccggcgg---ggtgcgacgtcgggcagggcgagtgggt 192
           ||||||||||||||| |||||| ||||||   ||||||||||||||  ||| ||||||||
Sbjct: 555 gccgttcgcggtgggggcggcggcggcggcggggtgcgacgtcggggtgggggagtgggt 614

                             
Query: 193 gtacgacgaggcggcgcg 210
           ||||||||||||||||||
Sbjct: 615 gtacgacgaggcggcgcg 632

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 133     gctgccgttcgcggtgggcgcgg 155
               |||||||||||||||||||||||
Sbjct: 2601240 gctgccgttcgcggtgggcgcgg 2601262

>ref|XM_470109.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1422

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 187 gtgggtgtacgacgaggcggcg 208
           ||||||||||||||||||||||
Sbjct: 342 gtgggtgtacgacgaggcggcg 363

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 137     ccgttcgcggtgggcgcggcgc 158
               ||||||||||||||||||||||
Sbjct: 3126190 ccgttcgcggtgggcgcggcgc 3126169



 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 142   cgcggtgggcgcggcgccggcg 163
             ||||||||||||||||||||||
Sbjct: 93082 cgcggtgggcgcggcgccggcg 93061

>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14
          Length = 307550

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 137    ccgttcgcggtgggcgcggcgc 158
              ||||||||||||||||||||||
Sbjct: 271047 ccgttcgcggtgggcgcggcgc 271026

>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 137   ccgttcgcggtgggcgcggcgc 158
             ||||||||||||||||||||||
Sbjct: 12939 ccgttcgcggtgggcgcggcgc 12918

>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 142   cgcggtgggcgcggcgccggcg 163
             ||||||||||||||||||||||
Sbjct: 93092 cgcggtgggcgcggcgccggcg 93071

>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             1/14
          Length = 343050

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 142   cgcggtgggcgcggcgccggcg 163
             ||||||||||||||||||||||
Sbjct: 93127 cgcggtgggcgcggcgccggcg 93106

>dbj|AK111450.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B10, full
           insert sequence
          Length = 1616

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 187 gtgggtgtacgacgaggcggcg 208
           ||||||||||||||||||||||
Sbjct: 418 gtgggtgtacgacgaggcggcg 439

>gb|AD000007.1|MSGY414A Mycobacterium tuberculosis sequence from clone y414a
          Length = 40121

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 137   ccgttcgcggtgggcgcggcgc 158
             ||||||||||||||||||||||
Sbjct: 17056 ccgttcgcggtgggcgcggcgc 17077

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 142     cgcggtgggcgcggcgccggc 162
               |||||||||||||||||||||
Sbjct: 1205012 cgcggtgggcgcggcgccggc 1204992

>ref|XM_416173.1| PREDICTED: Gallus gallus similar to Vito protein (LOC417932), mRNA
          Length = 2619

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 116 cagggtgacggcgagctgctgccg 139
           ||||||||||||| ||||||||||
Sbjct: 243 cagggtgacggcgggctgctgccg 220

>ref|XM_824126.1| Trypanosoma brucei TREU927 DNA topoisomerase II (Tb11.01.3390)
           partial mRNA
          Length = 4275

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 gtgggtgtacgacgaggcgg 206
           ||||||||||||||||||||
Sbjct: 111 gtgggtgtacgacgaggcgg 130

>gb|AE005780.1| Caulobacter crescentus CB15 section 106 of 359 of the complete genome
          Length = 14131

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   cggtgggcgcggcgccggcg 163
             ||||||||||||||||||||
Sbjct: 10000 cggtgggcgcggcgccggcg 10019

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     cggtgggcgcggcgccggcg 163
               ||||||||||||||||||||
Sbjct: 2283650 cggtgggcgcggcgccggcg 2283669



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 130     gctgctgccgttcgcggtgg 149
               ||||||||||||||||||||
Sbjct: 1509141 gctgctgccgttcgcggtgg 1509122

>gb|DQ309463.1| Trypanosoma brucei putative DNA topoisomerase IIbeta (TOP2beta)
           mRNA, complete cds
          Length = 4398

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 gtgggtgtacgacgaggcgg 206
           ||||||||||||||||||||
Sbjct: 234 gtgggtgtacgacgaggcgg 253

>gb|DQ309462.1| Trypanosoma brucei DNA topoisomerase IIalpha (TOP2alpha) mRNA,
           complete cds
          Length = 4368

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 gtgggtgtacgacgaggcgg 206
           ||||||||||||||||||||
Sbjct: 111 gtgggtgtacgacgaggcgg 130

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 39      gaacggacgccatggcgagg 58
               ||||||||||||||||||||
Sbjct: 4276325 gaacggacgccatggcgagg 4276344


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 927,307
Number of Sequences: 3902068
Number of extensions: 927307
Number of successful extensions: 78009
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75221
Number of HSP's gapped (non-prelim): 2783
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)