ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast39d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAP3_ARATH (O82291) Probable plastid-lipid associated protein 3,... 30 2.3
2GMIP_HUMAN (Q9P107) GEM-interacting protein (GMIP) 30 2.9
3DBNBT_TAXCA (Q8LL69) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltrans... 29 5.0
4SALAT_PAPSO (Q94FT4) Salutaridinol 7-O-acetyltransferase (EC 2.3... 29 6.6
5NIA_LOTJA (P39869) Nitrate reductase [NADH] (EC 1.7.1.1) (NR) 28 8.6

>PAP3_ARATH (O82291) Probable plastid-lipid associated protein 3, chloroplast|
           precursor (AtPap3) (Fibrillin 3)
          Length = 376

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
 Frame = +3

Query: 222 KTKVTLATFDLPYITFYYNQKLLLYRLAEGAGDFQDVTARMADALGDALAYFYPLAGR-- 395
           K  V  ++ DLP     + Q++ L  L +     QDV A ++ AL        P  G   
Sbjct: 282 KPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANISRALSGQPPLKLPFPGNRG 341

Query: 396 ------------IRQEKGDGGALYVDGEEGAEV 458
                       +R  +GDGG L+V   EG+ +
Sbjct: 342 SSWLLTTYLDKDLRISRGDGG-LFVLAREGSSL 373



to top

>GMIP_HUMAN (Q9P107) GEM-interacting protein (GMIP)|
          Length = 970

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 43  FLYSITHPALPFHAQHTPLTLARSSHHEP 129
           FL  +T P +PFH     ++LA++ H +P
Sbjct: 626 FLQELTEPVIPFHLYDAFISLAKTLHADP 654



to top

>DBNBT_TAXCA (Q8LL69) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase (EC|
           2.3.1.-) (DBTNBT)
          Length = 441

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 9/39 (23%)
 Frame = +3

Query: 348 DALGDALAYFYPLAGRIRQEK---------GDGGALYVD 437
           +AL   L Y++PLAGR+R ++         GD GAL+V+
Sbjct: 67  EALSKVLVYYFPLAGRLRSKEIGELEVECTGD-GALFVE 104



to top

>SALAT_PAPSO (Q94FT4) Salutaridinol 7-O-acetyltransferase (EC 2.3.1.150) (salAT)|
          Length = 474

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +3

Query: 237 LATFDLPYITFYYNQKLLLYRL----AEGAGDFQDVTARMADALGDALAYFYPLAGRI 398
           L+  D  +  +YY   +L Y      + G+ +  D    +  +L   L +FYP+AGR+
Sbjct: 32  LSLLDQCFPLYYYVPIILFYPATAANSTGSSNHHDDLDLLKSSLSKTLVHFYPMAGRM 89



to top

>NIA_LOTJA (P39869) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)|
          Length = 900

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 40  PFLYSITHPALPFHAQHTPLTLARSSHHEPKIKQQW-PWTTEMRGL 174
           PF      P L  H   TP+ L    +H P  K +W  WT E+ GL
Sbjct: 100 PFNSEPPLPRLMHHGFITPVPLHYVRNHGPVPKARWDDWTVEVTGL 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,713,123
Number of Sequences: 219361
Number of extensions: 426481
Number of successful extensions: 1461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top