ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast39d03 |
|---|---|
| Clone Library Name | barley_pub |
>TS101_HUMAN (Q99816) Tumor susceptibility gene 101 protein| Length = 390 Score = 64.3 bits (155), Expect = 1e-10 Identities = 26/67 (38%), Positives = 40/67 (59%) Frame = +2 Query: 209 FPSLHPKAALFTHSDGRAAHLLQADGTVPIHHAGATYNLPAVIWLPETYPRSPPLVFLSP 388 + L P + +DG + L+ GT+P+ + G TYN+P +WL +TYP +PP+ F+ P Sbjct: 32 YKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKP 91 Query: 389 TRDMLIK 409 T M IK Sbjct: 92 TSSMTIK 98
>TS101_RAT (Q6IRE4) Tumor susceptibility gene 101 protein| Length = 391 Score = 62.4 bits (150), Expect = 5e-10 Identities = 25/67 (37%), Positives = 39/67 (58%) Frame = +2 Query: 209 FPSLHPKAALFTHSDGRAAHLLQADGTVPIHHAGATYNLPAVIWLPETYPRSPPLVFLSP 388 + L P + +DG + L+ GT+P+ + G YN+P +WL +TYP +PP+ F+ P Sbjct: 32 YKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKP 91 Query: 389 TRDMLIK 409 T M IK Sbjct: 92 TSSMTIK 98
>TS101_MOUSE (Q61187) Tumor susceptibility gene 101 protein| Length = 391 Score = 62.4 bits (150), Expect = 5e-10 Identities = 25/67 (37%), Positives = 39/67 (58%) Frame = +2 Query: 209 FPSLHPKAALFTHSDGRAAHLLQADGTVPIHHAGATYNLPAVIWLPETYPRSPPLVFLSP 388 + L P + +DG + L+ GT+P+ + G YN+P +WL +TYP +PP+ F+ P Sbjct: 32 YKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDTYPYNPPICFVKP 91 Query: 389 TRDMLIK 409 T M IK Sbjct: 92 TSSMTIK 98
>STP22_YEAST (P25604) Suppressor protein STP22 of temperature-sensitive| alpha-factor receptor and arginine permease (Vacuolar protein sorting-associated protein VPS23) Length = 385 Score = 55.8 bits (133), Expect = 5e-08 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Frame = +2 Query: 191 VALADAFPSLHPKAALFTHSDGRAAHLLQADGTVPIHHAGAT-YNLPAVIWLPETYPRSP 367 +AL D F SL P+ +FTHSDG LL GT+ G++ +++P ++W+P YP P Sbjct: 36 LALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKP 95 Query: 368 PLVFLS 385 P + ++ Sbjct: 96 PFISIN 101
>HAM11_BACHD (Q9KDQ1) HAM1 protein homolog 1| Length = 193 Score = 30.4 bits (67), Expect = 2.2 Identities = 24/82 (29%), Positives = 35/82 (42%) Frame = +2 Query: 119 ALSQRGPSALPYAEDVKWLIRNHLVALADAFPSLHPKAALFTHSDGRAAHLLQADGTVPI 298 A+ Q P+A+ AED V D FP++ + D RAA +LQ G P+ Sbjct: 55 AVRQYEPTAIIVAED-----SGLCVDALDGFPNVRTARFMEGTDDERAAKVLQRLGDRPM 109 Query: 299 HHAGATYNLPAVIWLPETYPRS 364 A + VI P+ R+ Sbjct: 110 SERTAVFQSAVVILFPDGLMRT 131
>EXO84_YARLI (Q6C238) Exocyst complex component EXO84| Length = 657 Score = 30.4 bits (67), Expect = 2.2 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +2 Query: 179 RNHLVALADAFPSLHPKAALFTHSDGRAAHLLQADGTVPIHHAGATYNLPAVIWLP 346 RN +V L + + + A+LF H +G +L G + +GA Y L A W P Sbjct: 234 RNSMVMLENMWAN--ELASLFKHVEGAVKYLPAIPGRHVVAESGAWYQLNAATWKP 287
>ACHB_MOUSE (P09690) Acetylcholine receptor protein, beta subunit precursor| Length = 501 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = +2 Query: 299 HHAGATYNLPAVIWLPETY-PRSPPLVFLS---PTRDMLIKPHHPLVDRSG 439 H + T+ +P W+ + + + PP + L P RD L +PHH L RSG Sbjct: 334 HRSPHTHQMP--FWVRQIFIHKLPPYLGLKRPKPERDQLPEPHHSLSPRSG 382
>UBE2N_MACFA (Q4R4I1) Ubiquitin-conjugating enzyme E2 N (EC 6.3.2.19)| (Ubiquitin-protein ligase N) (Ubiquitin carrier protein N) Length = 152 Score = 30.0 bits (66), Expect = 2.9 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = +2 Query: 248 SDGRAAHLLQADGTVPIHHAGATYNLPAVIWLPETYPRSPPLVFLSPTRDMLIKPHHPLV 427 S+ R H++ A G G T+ L ++LPE YP + P V + K +HP V Sbjct: 30 SNARYFHVVIA-GPQDSPFEGGTFKLE--LFLPEEYPMAAPKV------RFMTKIYHPNV 80 Query: 428 DRSGLV 445 D+SG + Sbjct: 81 DKSGRI 86
>ZP3_RABIT (P48833) Zona pellucida sperm-binding protein 3 precursor (Zona| pellucida glycoprotein ZP3) (Sperm receptor) (Zona pellucida protein C) (Fragment) Length = 415 Score = 29.3 bits (64), Expect = 4.9 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = +2 Query: 293 PIHHAGATYNLPAVIWLPETYPRSPPLVFL-----SPTRDMLIKPHHPLVDRSGLVAN 451 P H G T +L A + T P L+F+ +PTRD P+H +VD G + + Sbjct: 182 PTFHLGDTAHLQAEV---RTGSHPPLLLFVDRCVATPTRDQSGSPYHTIVDLHGCLVD 236
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 10 GRRTKP*LPPPRSDGAVPVPAAAG 81 GRR + P P + GA PVPAA G Sbjct: 71 GRRRRRGAPQPAAGGAAPVPAAGG 94
>SYV_LEGPH (Q5ZXL2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 29.3 bits (64), Expect = 4.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +2 Query: 197 LADAFPSLHPKAALFTHSDGRAAHLLQADGTVPI 298 L D ++HP + F H G+ HL D T+P+ Sbjct: 219 LGDCAVAIHPDDSRFRHLIGKQVHLPLCDRTIPV 252
>SYV_LEGPA (Q5X728) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 29.3 bits (64), Expect = 4.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +2 Query: 197 LADAFPSLHPKAALFTHSDGRAAHLLQADGTVPI 298 L D ++HP + F H G+ HL D T+P+ Sbjct: 219 LGDCAVAIHPDDSRFRHLIGKQVHLPLCDRTIPV 252
>SYV_LEGPL (Q5WYI0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +2 Query: 197 LADAFPSLHPKAALFTHSDGRAAHLLQADGTVPI 298 L D ++HP + F H G+ HL D T+P+ Sbjct: 219 LGDCAVAVHPDDSRFRHLIGKQVHLPLCDRTIPV 252
>TRC5_ECOLI (P27190) DNA primase traC (EC 2.7.7.-) (Replication primase)| Length = 1448 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 203 DAFPSLHPKAALFTHSDGRAAHLLQADGTVPIHHAG 310 D P L PK ++ RA H+L+A G H AG Sbjct: 357 DGLPPLQPKKEQTWNAVERAEHILKASGATITHAAG 392
>ACHB_RAT (P25109) Acetylcholine receptor protein, beta subunit precursor| Length = 501 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +2 Query: 299 HHAGATYNLPAVIWLPETY-PRSPPLVFLS---PTRDMLIKPHHPLVDRSG 439 H + T+ +P W+ + + + PP + L P RD L +PHH RSG Sbjct: 334 HRSPHTHQMP--FWVRQIFIHKLPPYLGLKRPKPERDQLPEPHHSFSPRSG 382
>BIRC6_HUMAN (Q9NR09) Baculoviral IAP repeat-containing protein 6| (Ubiquitin-conjugating BIR-domain enzyme apollon) Length = 4829 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = +2 Query: 191 VALADAFPSLHPKAALFTHSDGRAAHLLQADGTVPIHHAGATYNLPAVIWLPETYPRSPP 370 V L+ + P L +++F D +++ T P A ++ P+ YP SPP Sbjct: 4555 VTLSTSLP-LSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP 4613 Query: 371 LVFLSPT 391 LV L T Sbjct: 4614 LVNLETT 4620 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,061,083 Number of Sequences: 219361 Number of extensions: 582599 Number of successful extensions: 2538 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2414 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2533 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
