Clone Information

BLAST Search Result

Clone Name	bast39d03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	504	e-139
2	dbj\|AP005290.2\| Oryza sativa (japonica cultivar-group) genomic D...	504	e-139
3	dbj\|AK102994.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	504	e-139
4	dbj\|AK069209.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	504	e-139
5	gb\|AF182374.6\| Bradyrhizobium sp. ORS278 photosynthetic gene clu...	44	0.39
6	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	44	0.39
7	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	42	1.6
8	ref\|XM_420604.1\| PREDICTED: Gallus gallus similar to hypothetica...	42	1.6
9	gb\|AY372243.1\| Psittacid herpesvirus 1 isolate 97-0001, complete...	42	1.6
10	emb\|AL939109.1\|SCO939109 Streptomyces coelicolor A3(2) complete ...	42	1.6
11	emb\|AJ632270.1\| Actinoplanes teichomyceticus teicoplanin gene cl...	42	1.6
12	emb\|AJ605139.1\| Actinoplanes teichomyceticus gene cluster for bi...	42	1.6
13	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	40	6.1
14	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	40	6.1
15	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	6.1
16	gb\|AC163329.6\| Mus musculus chromosome 5, clone RP24-294K15, com...	40	6.1
17	ref\|XM_369842.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	6.1
18	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	6.1
19	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	6.1
20	gb\|AY324878.1\| Oryza sativa (japonica cultivar-group) KUP1 mRNA,...	40	6.1
21	gb\|CP000284.1\| Methylobacillus flagellatus KT, complete genome	40	6.1
22	ref\|XM_792258.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	6.1
23	gb\|AC009027.10\| Homo sapiens chromosome 16 clone RP11-123C5, com...	40	6.1
24	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	6.1
25	gb\|AC009131.6\|AC009131 Homo sapiens chromosome 16 clone RP11-502...	40	6.1
26	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
27	gb\|AC084319.5\|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B...	40	6.1
28	gb\|AE004805.1\| Pseudomonas aeruginosa PAO1, section 366 of 529 o...	40	6.1
29	gb\|AF474071.1\| Hordeum vulgare subsp. vulgare cultivar Morex BAC...	40	6.1
30	gb\|AE005006.1\| Halobacterium sp. NRC-1 section 37 of 170 of the ...	40	6.1
31	dbj\|AK099276.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.1
32	dbj\|AK070389.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.1
33	gb\|AC107709.12\| Mus musculus chromosome 5, clone RP23-60E7, comp...	40	6.1
34	gb\|U96090.1\|SPU96090 Strongylocentrotus purpuratus myb-related t...	40	6.1
35	gb\|AC145935.3\| Gallus gallus BAC clone CH261-42P15 from chromoso...	40	6.1

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  504 bits (254), Expect = e-139
 Identities = 344/374 (91%)
 Strand = Plus / Minus

                                                                            
Query: 80       gcgagcggagcgcagtacgcgcaccagttcctcaacaccgccctctcgcagcgggggccc 139
                |||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 35856715 gcgagcggcgcgcagtacgcgcaccagttcctgaacacggcgctctcccagcgcgggccc 35856656

                                                                            
Query: 140      tcggcgctcccctacgcggaggacgtcaagtggctcatccgcaaccacctcgtcgccctc 199
                || || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 35856655 tccgccctgccctacgcggaggacgtgaagtggctgatccgcaaccacctcgtcgccctc 35856596

                                                                            
Query: 200      gccgacgccttcccctcgctccaccccaaggcggccctcttcacccacagcgacggccgc 259
                |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 35856595 gccgacgctttcccctcgctccaccccaaggccgccctcttcacccacaacgacggccgc 35856536

                                                                            
Query: 260      gccgcccacctgctccaggccgacggcaccgtccccatccaccacgccggggccacctac 319
                ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct: 35856535 gccgcccacctcctccaggccgacggcaccatccccatccaccacgccggcgcctcctac 35856476

                                                                            
Query: 320      aacctgcccgccgtcatctggctgcccgagacctacccgcgctccccgcccctcgtcttc 379
                ||||| ||||| ||| ||||||| || ||| |||||||||| || |||||||||||||||
Sbjct: 35856475 aacctccccgctgtcctctggctcccggagccctacccgcggtcgccgcccctcgtcttc 35856416

                                                                            
Query: 380      ctctcccccacccgcgacatgctcatcaagccccaccacccgctcgtcgaccgctccggc 439
                |||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 35856415 ctctccccaacacgcgacatggtcatcaagccccaccaccccctcgtcgaccgctccggc 35856356

                              
Query: 440      ctcgtcgccaacgc 453
                ||||||||||||||
Sbjct: 35856355 ctcgtcgccaacgc 35856342

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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score =  504 bits (254), Expect = e-139
 Identities = 344/374 (91%)
 Strand = Plus / Minus

                                                                         
Query: 80    gcgagcggagcgcagtacgcgcaccagttcctcaacaccgccctctcgcagcgggggccc 139
             |||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 47261 gcgagcggcgcgcagtacgcgcaccagttcctgaacacggcgctctcccagcgcgggccc 47202

                                                                         
Query: 140   tcggcgctcccctacgcggaggacgtcaagtggctcatccgcaaccacctcgtcgccctc 199
             || || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 47201 tccgccctgccctacgcggaggacgtgaagtggctgatccgcaaccacctcgtcgccctc 47142

                                                                         
Query: 200   gccgacgccttcccctcgctccaccccaaggcggccctcttcacccacagcgacggccgc 259
             |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 47141 gccgacgctttcccctcgctccaccccaaggccgccctcttcacccacaacgacggccgc 47082

                                                                         
Query: 260   gccgcccacctgctccaggccgacggcaccgtccccatccaccacgccggggccacctac 319
             ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct: 47081 gccgcccacctcctccaggccgacggcaccatccccatccaccacgccggcgcctcctac 47022

                                                                         
Query: 320   aacctgcccgccgtcatctggctgcccgagacctacccgcgctccccgcccctcgtcttc 379
             ||||| ||||| ||| ||||||| || ||| |||||||||| || |||||||||||||||
Sbjct: 47021 aacctccccgctgtcctctggctcccggagccctacccgcggtcgccgcccctcgtcttc 46962

                                                                         
Query: 380   ctctcccccacccgcgacatgctcatcaagccccaccacccgctcgtcgaccgctccggc 439
             |||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 46961 ctctccccaacacgcgacatggtcatcaagccccaccaccccctcgtcgaccgctccggc 46902

                           
Query: 440   ctcgtcgccaacgc 453
             ||||||||||||||
Sbjct: 46901 ctcgtcgccaacgc 46888

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>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full
           insert sequence
          Length = 1547

 Score =  504 bits (254), Expect = e-139
 Identities = 344/374 (91%)
 Strand = Plus / Plus

                                                                       
Query: 80  gcgagcggagcgcagtacgcgcaccagttcctcaacaccgccctctcgcagcgggggccc 139
           |||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 130 gcgagcggcgcgcagtacgcgcaccagttcctgaacacggcgctctcccagcgcgggccc 189

                                                                       
Query: 140 tcggcgctcccctacgcggaggacgtcaagtggctcatccgcaaccacctcgtcgccctc 199
           || || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 190 tccgccctgccctacgcggaggacgtgaagtggctgatccgcaaccacctcgtcgccctc 249

                                                                       
Query: 200 gccgacgccttcccctcgctccaccccaaggcggccctcttcacccacagcgacggccgc 259
           |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 250 gccgacgctttcccctcgctccaccccaaggccgccctcttcacccacaacgacggccgc 309

                                                                       
Query: 260 gccgcccacctgctccaggccgacggcaccgtccccatccaccacgccggggccacctac 319
           ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct: 310 gccgcccacctcctccaggccgacggcaccatccccatccaccacgccggcgcctcctac 369

                                                                       
Query: 320 aacctgcccgccgtcatctggctgcccgagacctacccgcgctccccgcccctcgtcttc 379
           ||||| ||||| ||| ||||||| || ||| |||||||||| || |||||||||||||||
Sbjct: 370 aacctccccgctgtcctctggctcccggagccctacccgcggtcgccgcccctcgtcttc 429

                                                                       
Query: 380 ctctcccccacccgcgacatgctcatcaagccccaccacccgctcgtcgaccgctccggc 439
           |||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 430 ctctccccaacacgcgacatggtcatcaagccccaccaccccctcgtcgaccgctccggc 489

                         
Query: 440 ctcgtcgccaacgc 453
           ||||||||||||||
Sbjct: 490 ctcgtcgccaacgc 503

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>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full
           insert sequence
          Length = 1562

 Score =  504 bits (254), Expect = e-139
 Identities = 344/374 (91%)
 Strand = Plus / Plus

                                                                       
Query: 80  gcgagcggagcgcagtacgcgcaccagttcctcaacaccgccctctcgcagcgggggccc 139
           |||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| ||||||
Sbjct: 145 gcgagcggcgcgcagtacgcgcaccagttcctgaacacggcgctctcccagcgcgggccc 204

                                                                       
Query: 140 tcggcgctcccctacgcggaggacgtcaagtggctcatccgcaaccacctcgtcgccctc 199
           || || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 205 tccgccctgccctacgcggaggacgtgaagtggctgatccgcaaccacctcgtcgccctc 264

                                                                       
Query: 200 gccgacgccttcccctcgctccaccccaaggcggccctcttcacccacagcgacggccgc 259
           |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 265 gccgacgctttcccctcgctccaccccaaggccgccctcttcacccacaacgacggccgc 324

                                                                       
Query: 260 gccgcccacctgctccaggccgacggcaccgtccccatccaccacgccggggccacctac 319
           ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct: 325 gccgcccacctcctccaggccgacggcaccatccccatccaccacgccggcgcctcctac 384

                                                                       
Query: 320 aacctgcccgccgtcatctggctgcccgagacctacccgcgctccccgcccctcgtcttc 379
           ||||| ||||| ||| ||||||| || ||| |||||||||| || |||||||||||||||
Sbjct: 385 aacctccccgctgtcctctggctcccggagccctacccgcggtcgccgcccctcgtcttc 444

                                                                       
Query: 380 ctctcccccacccgcgacatgctcatcaagccccaccacccgctcgtcgaccgctccggc 439
           |||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 ctctccccaacacgcgacatggtcatcaagccccaccaccccctcgtcgaccgctccggc 504

                         
Query: 440 ctcgtcgccaacgc 453
           ||||||||||||||
Sbjct: 505 ctcgtcgccaacgc 518

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>gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene cluser, complete
             sequence; and bacteriophytochrome (bphP), PpsR protein
             (ppsR), cytochrome C2 (cycA), geranylgeranyl
             bacteriochlorophyll reductase (bchP), light harvesting
             pigment major facilitator family (bch2),
             geranylgeranyl-bacteriochlorophyll synthetase (bchG),
             PpsR1 (ppsR1), and transcriptional regulator, AerR (aerR)
             genes, complete cds; and 2-vinyl bacteriochlorophillide
             hydratase BchF subunit (bchF) gene, partial cds
          Length = 30040

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 190   cgtcgccctcgccgacgccttc 211
             ||||||||||||||||||||||
Sbjct: 11926 cgtcgccctcgccgacgccttc 11905

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 259    cgccgcccacctgctccaggccgacg 284
              |||||||||||||||| |||||||||
Sbjct: 944270 cgccgcccacctgctcgaggccgacg 944245

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 305     gccggggccacctacaacctg 325
               |||||||||||||||||||||
Sbjct: 1340426 gccggggccacctacaacctg 1340446

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>ref|XM_420604.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ38991
           (LOC422650), mRNA
          Length = 1120

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 agcgacggccgcgccgcccacctgc 272
           |||||||||||||||||||| ||||
Sbjct: 69  agcgacggccgcgccgcccaactgc 45

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>gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete genome
          Length = 163025

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   gacggccgcgccgcccacctg 271
             |||||||||||||||||||||
Sbjct: 72461 gacggccgcgccgcccacctg 72481

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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 253    cggccgcgccgcccacctgctccag 277
              ||||||||||||| |||||||||||
Sbjct: 145589 cggccgcgccgccgacctgctccag 145565

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>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster
          Length = 89976

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 262   cgcccacctgctccaggccga 282
             |||||||||||||||||||||
Sbjct: 35417 cgcccacctgctccaggccga 35397

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>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of
             glycopeptide antibiotic teicoplanin
          Length = 89713

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 262   cgcccacctgctccaggccga 282
             |||||||||||||||||||||
Sbjct: 42024 cgcccacctgctccaggccga 42004

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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 246     acagcgacggccgcgccgcccacctgct 273
               ||||||||| |||||||||||| |||||
Sbjct: 2758499 acagcgacgaccgcgccgcccagctgct 2758526

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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 373     cgtcttcctctcccccaccc 392
               ||||||||||||||||||||
Sbjct: 1874178 cgtcttcctctcccccaccc 1874197

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 251    gacggccgcgccgcccacctgctc 274
              ||||||||||||||| ||||||||
Sbjct: 488887 gacggccgcgccgccgacctgctc 488910

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>gb|AC163329.6| Mus musculus chromosome 5, clone RP24-294K15, complete sequence
          Length = 186890

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cccctcgtcttcctctcccc 387
             ||||||||||||||||||||
Sbjct: 60807 cccctcgtcttcctctcccc 60788



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cccctcgtcttcctctcccc 387
             ||||||||||||||||||||
Sbjct: 60764 cccctcgtcttcctctcccc 60745

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>ref|XM_369842.1| Magnaporthe grisea 70-15 hypothetical protein (MG06357.4) partial
           mRNA
          Length = 363

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 tccaccccaaggcggccctc 238
           ||||||||||||||||||||
Sbjct: 87  tccaccccaaggcggccctc 106

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 420     cgctcgtcgaccgctccggcctcg 443
               |||||| |||||||||||||||||
Sbjct: 3299745 cgctcggcgaccgctccggcctcg 3299768

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 189      tcgtcgccctcgccgacgccttcccctc 216
                |||||| |||||||| ||||||||||||
Sbjct: 20377141 tcgtcggcctcgccgtcgccttcccctc 20377168

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>gb|AY324878.1| Oryza sativa (japonica cultivar-group) KUP1 mRNA, complete cds
          Length = 2655

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 421  gctcgtcgaccgctccggcctcgtcgcc 448
            ||||||||||||| ||||||||| ||||
Sbjct: 2131 gctcgtcgaccgccccggcctcgccgcc 2104

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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    accacctcgtcgccctcgcc 202
              ||||||||||||||||||||
Sbjct: 648792 accacctcgtcgccctcgcc 648773

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>ref|XM_792258.1| PREDICTED: Strongylocentrotus purpuratus similar to Myb-related
            protein B (B-Myb) (LOC592751), mRNA
          Length = 3405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    agagaaggcaggaggaccaa 23
            ||||||||||||||||||||
Sbjct: 1718 agagaaggcaggaggaccaa 1737

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>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence
          Length = 178256

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 355  cccgcgctccccgcccctcg 374
            ||||||||||||||||||||
Sbjct: 7826 cccgcgctccccgcccctcg 7807

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tcgtcgccctcgccgacgcc 208
              ||||||||||||||||||||
Sbjct: 956316 tcgtcgccctcgccgacgcc 956335

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>gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence
          Length = 180835

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   cccgcgctccccgcccctcg 374
             ||||||||||||||||||||
Sbjct: 92366 cccgcgctccccgcccctcg 92347

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 189      tcgtcgccctcgccgacgccttcccctc 216
                |||||| |||||||| ||||||||||||
Sbjct: 20370170 tcgtcggcctcgccgtcgccttcccctc 20370197

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>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete
             sequence
          Length = 152883

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 189   tcgtcgccctcgccgacgccttcccctc 216
             |||||| |||||||| ||||||||||||
Sbjct: 21441 tcgtcggcctcgccgtcgccttcccctc 21468

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>gb|AE004805.1| Pseudomonas aeruginosa PAO1, section 366 of 529 of the complete
            genome
          Length = 10637

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  cgccctcgccgacgccttcc 212
            ||||||||||||||||||||
Sbjct: 7499 cgccctcgccgacgccttcc 7518

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>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   ctcgtcttcctctcccccac 390
             ||||||||||||||||||||
Sbjct: 29190 ctcgtcttcctctcccccac 29171

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>gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the complete genome
          Length = 13283

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   tggctgcccgagacctacccgcgc 361
             ||||||||||| ||||||||||||
Sbjct: 11081 tggctgcccgacacctacccgcgc 11058

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>dbj|AK099276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105H10, full
           insert sequence
          Length = 2393

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 189 tcgtcgccctcgccgacgccttcccctc 216
           |||||| |||||||| ||||||||||||
Sbjct: 293 tcgtcggcctcgccgtcgccttcccctc 320

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>dbj|AK070389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048I16, full
           insert sequence
          Length = 2466

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 189 tcgtcgccctcgccgacgccttcccctc 216
           |||||| |||||||| ||||||||||||
Sbjct: 366 tcgtcggcctcgccgtcgccttcccctc 393

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>gb|AC107709.12| Mus musculus chromosome 5, clone RP23-60E7, complete sequence
          Length = 256771

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   cccctcgtcttcctctcccc 387
             ||||||||||||||||||||
Sbjct: 72771 cccctcgtcttcctctcccc 72790



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   cccctcgtcttcctctcccc 387
             ||||||||||||||||||||
Sbjct: 72728 cccctcgtcttcctctcccc 72747

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>gb|U96090.1|SPU96090 Strongylocentrotus purpuratus myb-related transcription factor mRNA,
            partial cds
          Length = 3203

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    agagaaggcaggaggaccaa 23
            ||||||||||||||||||||
Sbjct: 1500 agagaaggcaggaggaccaa 1519

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>gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromosome unknown, complete
             sequence
          Length = 194387

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   cggccgcgccgcccacctgc 272
             ||||||||||||||||||||
Sbjct: 73972 cggccgcgccgcccacctgc 73953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,802,009
Number of Sequences: 3902068
Number of extensions: 2802009
Number of successful extensions: 66003
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65276
Number of HSP's gapped (non-prelim): 727
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result