| Clone Name | bast39c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479571.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1511 Score = 52.0 bits (26), Expect = 3e-04 Identities = 43/48 (89%), Gaps = 3/48 (6%) Strand = Plus / Plus Query: 59 aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg 106 |||||||| ||||||||||||||||||| ||||||| ||||||||| Sbjct: 78 aagatgtttgggttcgggcaccaccaca---accaggcaccggcggcg 122
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 3e-04 Identities = 43/48 (89%), Gaps = 3/48 (6%) Strand = Plus / Plus Query: 59 aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg 106 |||||||| ||||||||||||||||||| ||||||| ||||||||| Sbjct: 28950715 aagatgtttgggttcgggcaccaccaca---accaggcaccggcggcg 28950759
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 52.0 bits (26), Expect = 3e-04 Identities = 43/48 (89%), Gaps = 3/48 (6%) Strand = Plus / Plus Query: 59 aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg 106 |||||||| ||||||||||||||||||| ||||||| ||||||||| Sbjct: 68252 aagatgtttgggttcgggcaccaccaca---accaggcaccggcggcg 68296
>emb|Y08987.1|OSR40G2 O.sativa osr40g2 gene Length = 2101 Score = 52.0 bits (26), Expect = 3e-04 Identities = 43/48 (89%), Gaps = 3/48 (6%) Strand = Plus / Plus Query: 59 aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg 106 |||||||| ||||||||||||||||||| ||||||| ||||||||| Sbjct: 642 aagatgtttgggttcgggcaccaccaca---accaggcaccggcggcg 686
>dbj|AK103324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K07, full insert sequence Length = 1512 Score = 52.0 bits (26), Expect = 3e-04 Identities = 43/48 (89%), Gaps = 3/48 (6%) Strand = Plus / Plus Query: 59 aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg 106 |||||||| ||||||||||||||||||| ||||||| ||||||||| Sbjct: 78 aagatgtttgggttcgggcaccaccaca---accaggcaccggcggcg 122
>gb|BT017376.1| Zea mays clone EL01N0325G07.c mRNA sequence Length = 778 Score = 42.1 bits (21), Expect = 0.31 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 caagatgttcgggttcgggcaccac 82 |||||||||||| |||||||||||| Sbjct: 76 caagatgttcggcttcgggcaccac 100
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.31 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 caagatgttcgggttcgggcaccac 82 |||||||||||| |||||||||||| Sbjct: 11932620 caagatgttcggcttcgggcaccac 11932596
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.31 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 caagatgttcgggttcgggcaccac 82 |||||||||||| |||||||||||| Sbjct: 11929383 caagatgttcggcttcgggcaccac 11929359
>emb|X95402.1|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1 Length = 1458 Score = 42.1 bits (21), Expect = 0.31 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 caagatgttcgggttcgggcaccac 82 |||||||||||| |||||||||||| Sbjct: 59 caagatgttcggcttcgggcaccac 83
>dbj|AK069815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031K10, full insert sequence Length = 1765 Score = 42.1 bits (21), Expect = 0.31 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 caagatgttcgggttcgggcaccac 82 |||||||||||| |||||||||||| Sbjct: 72 caagatgttcggcttcgggcaccac 96
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 42.1 bits (21), Expect = 0.31 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 caagatgttcgggttcgggcaccac 82 |||||||||||| |||||||||||| Sbjct: 33882 caagatgttcggcttcgggcaccac 33858
>gb|BC035897.1| Homo sapiens jumonji domain containing 3, mRNA (cDNA clone IMAGE:5240292), with apparent retained intron Length = 1864 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 842 cacaaggaccaggctccggcggcg 865
>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the Chd3 gene for chromodomain helicase DNA binding protein 3, five novel genes, the 3' end of the gene for a novel protein similar to dynein and four CpG islands, complete sequence Length = 165212 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 56882 cacaaggaccaggctccggcggcg 56859
>emb|CR381576.10| Zebrafish DNA sequence from clone DKEY-245F17 in linkage group 17, complete sequence Length = 185749 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cagctccaaccagtctagcc 33 |||||||||||||||||||| Sbjct: 88254 cagctccaaccagtctagcc 88273
>gb|AC104581.22| Homo sapiens chromosome 17, clone RP11-1099M24, complete sequence Length = 187718 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 17042 cacaaggaccaggctccggcggcg 17065
>ref|XM_945439.1| PREDICTED: Homo sapiens jumonji domain containing 3, transcript variant 4 (JMJD3), mRNA Length = 4757 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 3765 cacaaggaccaggctccggcggcg 3788
>ref|XM_941783.1| PREDICTED: Homo sapiens jumonji domain containing 3, transcript variant 3 (JMJD3), mRNA Length = 6701 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 5709 cacaaggaccaggctccggcggcg 5732
>ref|XM_933967.1| PREDICTED: Homo sapiens jumonji domain containing 3, transcript variant 2 (JMJD3), mRNA Length = 4756 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 3765 cacaaggaccaggctccggcggcg 3788
>ref|XM_043272.10| PREDICTED: Homo sapiens jumonji domain containing 3, transcript variant 1 (JMJD3), mRNA Length = 6694 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 5703 cacaaggaccaggctccggcggcg 5726
>ref|NM_001017426.1| Mus musculus jumonji domain containing 3 (Jmjd3), mRNA Length = 6654 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 5619 cacaaggaccaggctccggcggcg 5642
>emb|AL928980.7| Zebrafish DNA sequence from clone DKEY-77M16 in linkage group 11, complete sequence Length = 167387 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 agctccaaccagtctagccg 34 |||||||||||||||||||| Sbjct: 57110 agctccaaccagtctagccg 57129
>dbj|AB002344.2| Human mRNA for KIAA0346 gene, partial cds Length = 6698 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cacaaggaccaggcgccggcggcg 106 |||||||||||||| ||||||||| Sbjct: 5714 cacaaggaccaggctccggcggcg 5737
>emb|CR555294.10| Zebrafish DNA sequence from clone CH211-169P4 in linkage group 19, complete sequence Length = 142042 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 agctccaaccagtctagcc 33 ||||||||||||||||||| Sbjct: 73487 agctccaaccagtctagcc 73505
>ref|XM_500590.1| Yarrowia lipolytica CLIB122, YALI0B06985g predicted mRNA Length = 939 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 ccaccacaaggaccaggcg 97 ||||||||||||||||||| Sbjct: 546 ccaccacaaggaccaggcg 564
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gaccaggcgccggcggcgt 107 ||||||||||||||||||| Sbjct: 95083 gaccaggcgccggcggcgt 95101
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gaccaggcgccggcggcgt 107 ||||||||||||||||||| Sbjct: 18126 gaccaggcgccggcggcgt 18144
>emb|CR936809.1| Homo sapiens mRNA; cDNA DKFZp781M1056 (from clone DKFZp781M1056) Length = 5645 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 4734 caccaccacaaggaccagg 4716
>dbj|AK128508.1| Homo sapiens cDNA FLJ46661 fis, clone TRACH3006717 Length = 3856 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 3000 caccaccacaaggaccagg 2982
>ref|NM_014738.2| Homo sapiens KIAA0195 (KIAA0195), mRNA Length = 5002 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 4129 caccaccacaaggaccagg 4111
>dbj|AK094864.1| Homo sapiens cDNA FLJ37545 fis, clone BRCAN2027355 Length = 2596 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 1743 caccaccacaaggaccagg 1725
>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24, complete sequence Length = 199820 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 cagctccaaccagtctagc 32 ||||||||||||||||||| Sbjct: 94589 cagctccaaccagtctagc 94607
>gb|AC100787.17| Homo sapiens chromosome 17, clone CTD-2589J4, complete sequence Length = 233062 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 150409 caccaccacaaggaccagg 150391
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 aggaccaggcgccggcggc 105 ||||||||||||||||||| Sbjct: 4890 aggaccaggcgccggcggc 4872
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 2919725 caccaccacaaggaccagg 2919743
>dbj|D83779.1| Homo sapiens mRNA for KIAA0195 gene, partial cds Length = 5022 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 4169 caccaccacaaggaccagg 4151
>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18, complete sequence Length = 145250 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 agctccaaccagtctagcc 33 ||||||||||||||||||| Sbjct: 72902 agctccaaccagtctagcc 72884
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24, complete sequence Length = 213091 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 cagctccaaccagtctagc 32 ||||||||||||||||||| Sbjct: 181131 cagctccaaccagtctagc 181113
>gb|BC045540.1| Homo sapiens KIAA0195, mRNA (cDNA clone MGC:57170 IMAGE:5274473), complete cds Length = 5002 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 4129 caccaccacaaggaccagg 4111
>gb|BC042942.1| Homo sapiens KIAA0195, mRNA (cDNA clone IMAGE:5295538), complete cds Length = 5448 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 4576 caccaccacaaggaccagg 4558
>gb|AF070545.1|AF070545 Homo sapiens clone 24581 unknown mRNA Length = 1470 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caccaccacaaggaccagg 95 ||||||||||||||||||| Sbjct: 596 caccaccacaaggaccagg 578
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ccaccacaaggaccaggcg 97 ||||||||||||||||||| Sbjct: 929426 ccaccacaaggaccaggcg 929408 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 783,977 Number of Sequences: 3902068 Number of extensions: 783977 Number of successful extensions: 56173 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55813 Number of HSP's gapped (non-prelim): 360 length of query: 107 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 86 effective length of database: 17,151,101,840 effective search space: 1474994758240 effective search space used: 1474994758240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)