ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast38e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474251.1| Oryza sativa (japonica cultivar-group), predic... 101 7e-19
2dbj|AK121951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 7e-19
3emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 88 1e-14
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 1e-14
5emb|AL354740.29| Human DNA sequence from clone RP11-513I15 on ch... 44 0.13
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.13
7dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.13
8ref|NM_193012.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.52
9gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 0.52
10gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.52
11gb|AF286367.1|AF286367 Homo sapiens HMGIY gene, promoter 42 0.52
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.52
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.52
14dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.52
15dbj|AK071645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.52
16dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.52
17dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.52
18gb|AY103911.1| Zea mays PCO142108 mRNA sequence 42 0.52
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.52
20gb|DQ210351.1| Maxillaria marmoliana 18S ribosomal RNA gene, par... 40 2.1
21gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, c... 40 2.1
22gb|AE005871.1| Caulobacter crescentus CB15 section 197 of 359 of... 40 2.1
23gb|AC087639.7| Homo sapiens chromosome 15, clone RP11-696L21, co... 40 2.1
24gb|AC025254.14| Homo sapiens 12 BAC RP11-1041F24 (Roswell Park C... 40 2.1
25gb|AC079411.6| Homo sapiens chromosome 16 clone CTD-2050B12, com... 40 2.1
26gb|U86303.1|CCU86303 Caulobacter crescentus topoisomerase IV Par... 40 2.1
27gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 2.1
28gb|U94697.1|CCU94697 Caulobacter crescentus DNA topoisomerase IV... 40 2.1
29gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome... 38 8.2
30gb|DQ210530.1| Maxillaria diuturna 18S ribosomal RNA gene, parti... 38 8.2
31gb|DQ210473.1| Maxillaria diuturna 18S ribosomal RNA gene, parti... 38 8.2
32gb|DQ210314.1| Maxillaria diuturna 18S ribosomal RNA gene, parti... 38 8.2
33gb|DQ210186.1| Maxillaria multiflora 18S ribosomal RNA gene, par... 38 8.2
34gb|DQ210047.1| Maxillaria ringens 18S ribosomal RNA gene, partia... 38 8.2
35gb|DQ210033.1| Maxillaria diuturna 18S ribosomal RNA gene, parti... 38 8.2
36gb|DQ210022.1| Maxillaria diuturna 18S ribosomal RNA gene, parti... 38 8.2
37gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 38 8.2
38gb|AC139245.4| Mus musculus BAC clone RP23-309N16 from chromosom... 38 8.2
39ref|XM_859482.1| PREDICTED: Canis familiaris hypothetical protei... 38 8.2
40emb|CR855278.2| Platypus DNA sequence from clone XX-235F6, compl... 38 8.2
41gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 38 8.2
42emb|AL355984.11| Human DNA sequence from clone RP11-501K3 on chr... 38 8.2
43gb|AY296729.1| Anopheles dirus B SG1D-like salivary protein prec... 38 8.2
44emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 38 8.2
45gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, compl... 38 8.2
46gb|AC008972.8| Homo sapiens chromosome 5 clone CTD-2376I4, compl... 38 8.2
47dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
48gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 8.2
49gb|AY789477.1| Homo sapiens connexin 30 (GJB6) gene, promoter re... 38 8.2
50dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
51gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, com... 38 8.2
52gb|AC005787.1|AC005787 Homo sapiens chromosome 19, cosmid R33374... 38 8.2
53gb|U63302.1|BSU63302 Bacillus subtilis putative aminotransferase... 38 8.2
54gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, co... 38 8.2 
>ref|XM_474251.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 930

 Score =  101 bits (51), Expect = 7e-19
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                       
Query: 89  cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcggtaagcg 148
           |||||||||||||||||||||||||||  | ||||||||||||||||| || || |||||
Sbjct: 15  cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 74

                              
Query: 149 ctcgagagaatcggagtca 167
           |||||||||| ||||||||
Sbjct: 75  ctcgagagaaacggagtca 93
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>dbj|AK121951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K04, full
           insert sequence
          Length = 1349

 Score =  101 bits (51), Expect = 7e-19
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                       
Query: 89  cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcggtaagcg 148
           |||||||||||||||||||||||||||  | ||||||||||||||||| || || |||||
Sbjct: 137 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 196

                              
Query: 149 ctcgagagaatcggagtca 167
           |||||||||| ||||||||
Sbjct: 197 ctcgagagaaacggagtca 215
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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                         
Query: 89    cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcggtaagcg 148
             |||||||||||||||||||||||||||  | ||||||||||||||||| || || |||||
Sbjct: 67812 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 67871

                     
Query: 149   ctcgagag 156
             ||||||||
Sbjct: 67872 ctcgagag 67879
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                            
Query: 89       cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcggtaagcg 148
                |||||||||||||||||||||||||||  | ||||||||||||||||| || || |||||
Sbjct: 34016916 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 34016975

                        
Query: 149      ctcgagag 156
                ||||||||
Sbjct: 34016976 ctcgagag 34016983
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>emb|AL354740.29| Human DNA sequence from clone RP11-513I15 on chromosome 6 Contains the 5'
              end of the GRM4 gene for glutamate receptor metabotropic 4,
              keratin 18 pseudogene 1 (KRT18P1), a cytochrome c, somatic
              (CYCS) pseudogene, the HMGA1 gene for high mobility group
              AT-hook 1, a ribosomal protein L35 (RPL35) pseudogene, part
              of a novel gene and CpG islands, complete sequence
          Length = 151828

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 12     ccgccgcgccccaccccgcctccgcg 37
              ||||||| ||||||||||||||||||
Sbjct: 102978 ccgccgctccccaccccgcctccgcg 103003
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 73       ggctcgccatggatgccgccgcccgc 98
                |||| |||||||||||||||||||||
Sbjct: 25239278 ggctggccatggatgccgccgcccgc 25239253



 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        cctccctccctccgccgcgcc 21
                |||||||||||||||||||||
Sbjct: 20052588 cctccctccctccgccgcgcc 20052608
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>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0505A04
          Length = 159241

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 73    ggctcgccatggatgccgccgcccgc 98
             |||| |||||||||||||||||||||
Sbjct: 57886 ggctggccatggatgccgccgcccgc 57861
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>ref|NM_193012.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 666

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 10  ctccgccgcgccccaccccgcctcc 34
           |||||||||| ||||||||||||||
Sbjct: 243 ctccgccgcgtcccaccccgcctcc 219
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 88    ccgccgcccgcaagagatcccggcc 112
             |||||||||||||| ||||||||||
Sbjct: 89118 ccgccgcccgcaagggatcccggcc 89094
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>gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             nbeb0015F09b, complete sequence
          Length = 108964

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     cctccctccctccgccgcgcc 21
             |||||||||||||||||||||
Sbjct: 66822 cctccctccctccgccgcgcc 66842
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>gb|AF286367.1|AF286367 Homo sapiens HMGIY gene, promoter
          Length = 3495

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 12   ccgccgcgccccaccccgcctccgc 36
            ||||||| |||||||||||||||||
Sbjct: 2693 ccgccgctccccaccccgcctccgc 2717
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        cctccctccctccgccgcgcc 21
                |||||||||||||||||||||
Sbjct: 15483476 cctccctccctccgccgcgcc 15483496
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 10       ctccgccgcgccccaccccgcctcc 34
                |||||||||| ||||||||||||||
Sbjct: 25844577 ctccgccgcgtcccaccccgcctcc 25844553
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>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1068H08
          Length = 152794

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     cctccctccctccgccgcgcc 21
             |||||||||||||||||||||
Sbjct: 40862 cctccctccctccgccgcgcc 40882
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>dbj|AK071645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105M22,
          full insert sequence
          Length = 1276

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  cctccctccctccgccgcgcc 21
          |||||||||||||||||||||
Sbjct: 25 cctccctccctccgccgcgcc 45
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>dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G05,
          full insert sequence
          Length = 1690

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  cctccctccctccgccgcgcc 21
          |||||||||||||||||||||
Sbjct: 62 cctccctccctccgccgcgcc 82
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>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1339_F05
          Length = 132708

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 10    ctccgccgcgccccaccccgcctcc 34
             |||||||||| ||||||||||||||
Sbjct: 15025 ctccgccgcgtcccaccccgcctcc 15001
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>gb|AY103911.1| Zea mays PCO142108 mRNA sequence
          Length = 861

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  aagagatcccggccggagtcc 119
           |||||||||||||||||||||
Sbjct: 370 aagagatcccggccggagtcc 390
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        cctccctccctccgccgcgcc 21
                |||||||||||||||||||||
Sbjct: 15491717 cctccctccctccgccgcgcc 15491737
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>gb|DQ210351.1| Maxillaria marmoliana 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 767

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 9   cctccgccgcgccccacccc 28
           ||||||||||||||||||||
Sbjct: 184 cctccgccgcgccccacccc 165
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>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence
          Length = 194334

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    ctccgccgcgccccaccccgcctccgcg 37
             |||||||||||||  |||||||||||||
Sbjct: 64742 ctccgccgcgcccgcccccgcctccgcg 64715
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>gb|AE005871.1| Caulobacter crescentus CB15 section 197 of 359 of the complete
           genome
          Length = 10070

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 13  cgccgcgccccaccccgcctccgc 36
           |||||||||||| |||||||||||
Sbjct: 236 cgccgcgccccatcccgcctccgc 259
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>gb|AC087639.7| Homo sapiens chromosome 15, clone RP11-696L21, complete sequence
          Length = 190015

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     ccgcgccccaccccgcctcc 34
              ||||||||||||||||||||
Sbjct: 141765 ccgcgccccaccccgcctcc 141746
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>gb|AC025254.14| Homo sapiens 12 BAC RP11-1041F24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 160867

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     ccctccgccgcgccccaccccgcc 31
             ||||||||| ||||||||||||||
Sbjct: 15073 ccctccgccccgccccaccccgcc 15096
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>gb|AC079411.6| Homo sapiens chromosome 16 clone CTD-2050B12, complete sequence
          Length = 114356

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    gcgccccaccccgcctccgc 36
             ||||||||||||||||||||
Sbjct: 75234 gcgccccaccccgcctccgc 75253
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>gb|U86303.1|CCU86303 Caulobacter crescentus topoisomerase IV ParE subunit (parE) gene,
           complete cds, and propionyl-CoA carboxylase beta chain
           (pccB) homolog gene, partial cds
          Length = 3615

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 13  cgccgcgccccaccccgcctccgc 36
           |||||||||||| |||||||||||
Sbjct: 483 cgccgcgccccatcccgcctccgc 506
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     tccgccgcgccccaccccgc 30
              ||||||||||||||||||||
Sbjct: 204269 tccgccgcgccccaccccgc 204250
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>gb|U94697.1|CCU94697 Caulobacter crescentus DNA topoisomerase IV ParE subunit (parE)
          gene, complete cds, and propionyl-CoA carboxylase beta
          chain homolog (pccB) gene, partial cds
          Length = 3166

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 cgccgcgccccaccccgcctccgc 36
          |||||||||||| |||||||||||
Sbjct: 34 cgccgcgccccatcccgcctccgc 57
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>gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome 8, complete sequence
          Length = 176523

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    cgccccaccccgcctccgc 36
             |||||||||||||||||||
Sbjct: 44810 cgccccaccccgcctccgc 44792
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>gb|DQ210530.1| Maxillaria diuturna 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 765

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   cctccgccgcgccccaccc 27
           |||||||||||||||||||
Sbjct: 182 cctccgccgcgccccaccc 164
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>gb|DQ210473.1| Maxillaria diuturna 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 765

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   cctccgccgcgccccaccc 27
           |||||||||||||||||||
Sbjct: 182 cctccgccgcgccccaccc 164
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>gb|DQ210314.1| Maxillaria diuturna 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 766

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   cctccgccgcgccccaccc 27
           |||||||||||||||||||
Sbjct: 182 cctccgccgcgccccaccc 164
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>gb|DQ210186.1| Maxillaria multiflora 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 766

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 9   cctccgccgcgccccaccccgcc 31
           ||||||||||||||| |||||||
Sbjct: 183 cctccgccgcgcccccccccgcc 161
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>gb|DQ210047.1| Maxillaria ringens 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 766

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 9   cctccgccgcgccccaccccgcc 31
           |||||||||||||||| ||||||
Sbjct: 183 cctccgccgcgccccagcccgcc 161
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>gb|DQ210033.1| Maxillaria diuturna 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 765

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   cctccgccgcgccccaccc 27
           |||||||||||||||||||
Sbjct: 182 cctccgccgcgccccaccc 164
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>gb|DQ210022.1| Maxillaria diuturna 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 764

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   cctccgccgcgccccaccc 27
           |||||||||||||||||||
Sbjct: 182 cctccgccgcgccccaccc 164
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>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      cctccctccgccgcgcccc 23
              |||||||||||||||||||
Sbjct: 121798 cctccctccgccgcgcccc 121780
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>gb|AC139245.4| Mus musculus BAC clone RP23-309N16 from chromosome 8, complete sequence
          Length = 202789

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      ccctccctccgccgcgccc 22
              |||||||||||||||||||
Sbjct: 134826 ccctccctccgccgcgccc 134844
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>ref|XM_859482.1| PREDICTED: Canis familiaris hypothetical protein LOC609524
           (LOC609524), mRNA
          Length = 950

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  ccgcgccccaccccgcctc 33
           |||||||||||||||||||
Sbjct: 382 ccgcgccccaccccgcctc 364
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>emb|CR855278.2| Platypus DNA sequence from clone XX-235F6, complete sequence
          Length = 140510

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 135    gcaggcggtaagcgctcga 153
              |||||||||||||||||||
Sbjct: 136973 gcaggcggtaagcgctcga 136991
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 72      gggctcgccatggatgccg 90
               |||||||||||||||||||
Sbjct: 1150167 gggctcgccatggatgccg 1150185



 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 72      gggctcgccatggatgccg 90
               |||||||||||||||||||
Sbjct: 1007135 gggctcgccatggatgccg 1007153
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>emb|AL355984.11| Human DNA sequence from clone RP11-501K3 on chromosome 13 Contains the
             GJB6 gene for gap junction protein, beta 6 (connexin 30)
             and 2 CpG islands, complete sequence
          Length = 160536

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    ccgcgccccaccccgcctc 33
             |||||||||||||||||||
Sbjct: 30188 ccgcgccccaccccgcctc 30206
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>gb|AY296729.1| Anopheles dirus B SG1D-like salivary protein precursor, mRNA,
           partial cds
          Length = 1269

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 125 cggaggcgccgcaggcggt 143
           |||||||||||||||||||
Sbjct: 349 cggaggcgccgcaggcggt 367
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 77     cgccatggatgccgccgcc 95
              |||||||||||||||||||
Sbjct: 328074 cgccatggatgccgccgcc 328092
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>gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, complete sequence
          Length = 153570

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     cgcgccccaccccgcctcc 34
              |||||||||||||||||||
Sbjct: 103497 cgcgccccaccccgcctcc 103515
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>gb|AC008972.8| Homo sapiens chromosome 5 clone CTD-2376I4, complete sequence
          Length = 98842

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 2     ctccctccctccgccgcgccccacccc 28
             ||||||||| |||||||||||| ||||
Sbjct: 41890 ctccctcccaccgccgcgccccccccc 41916
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 12       ccgccgcgccccaccccgcctccgcga 38
                ||||| |||||| ||||||||||||||
Sbjct: 37357126 ccgccccgccccgccccgcctccgcga 37357152
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 13      cgccgcgccccaccccgcc 31
               |||||||||||||||||||
Sbjct: 4558110 cgccgcgccccaccccgcc 4558092
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>gb|AY789477.1| Homo sapiens connexin 30 (GJB6) gene, promoter region and 5' UTR
          Length = 494

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  ccgcgccccaccccgcctc 33
           |||||||||||||||||||
Sbjct: 431 ccgcgccccaccccgcctc 413
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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423B08
          Length = 151490

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 12    ccgccgcgccccaccccgcctccgcga 38
             ||||| |||||| ||||||||||||||
Sbjct: 69160 ccgccccgccccgccccgcctccgcga 69186
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>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence
          Length = 174120

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      cctccctccctccgccgcg 19
              |||||||||||||||||||
Sbjct: 136520 cctccctccctccgccgcg 136538
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>gb|AC005787.1|AC005787 Homo sapiens chromosome 19, cosmid R33374, complete sequence
          Length = 43346

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    ctccctccctccgccgcgc 20
            |||||||||||||||||||
Sbjct: 9616 ctccctccctccgccgcgc 9598
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>gb|U63302.1|BSU63302 Bacillus subtilis putative aminotransferase (patB), ATP-dependent
            protein kinase B (kinB), kinase-associated protein B
            (kapB) and KapD (kapD) genes, complete cds
          Length = 5100

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 123  aacggaggcgccgcaggcg 141
            |||||||||||||||||||
Sbjct: 1726 aacggaggcgccgcaggcg 1708
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>gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, complete sequence
          Length = 204013

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     cctccctccctccgccgcg 19
             |||||||||||||||||||
Sbjct: 43068 cctccctccctccgccgcg 43086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,301,122
Number of Sequences: 3902068
Number of extensions: 1301122
Number of successful extensions: 312728
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 311527
Number of HSP's gapped (non-prelim): 1201
length of query: 168
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 146
effective length of database: 17,147,199,772
effective search space: 2503491166712
effective search space used: 2503491166712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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