>ref|XM_469916.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 777

 Score =  264 bits (133), Expect = 2e-67
 Identities = 229/261 (87%)
 Strand = Plus / Plus

                                                                       
Query: 138 agggcggggcccggcgccgtcggtagcgccggcagcctcggcctccggatcgggcaggcc 197
           ||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 16  agggcgggggccggcgccgtcgggagcgccggcagcctcggcctccgcgtcgggcaggcc 75

                                                                       
Query: 198 gcctgctcgtcggcggcgctcatgttcatgtccgtcggcgtcgagttcttcagctacacg 257
           | || |||||||||| | ||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 76  gtcttctcgtcggcgtccctgctgttcatgtccgtcggcgtcgagttcttcagctatact 135

                                                                       
Query: 258 gccttctgcttcctggttacgatcatgggcctgctggtgccctggagctgcacgctcgcc 317
           |||||||||||||| ||||| || |||||| || || | ||||||||||| || ||||||
Sbjct: 136 gccttctgcttcctagttacaataatgggcttggtgatcccctggagctgtacactcgcc 195

                                                                       
Query: 318 atgatcgacgtgtactccatactcgtcgggtgcccgcttcacgtgcccggtgtcatggcc 377
           ||||||||||||||||||||||| || |||||||| ||||  || || |||||||||| |
Sbjct: 196 atgatcgacgtgtactccatacttgtagggtgccctcttcgggtaccaggtgtcatggtc 255

                                
Query: 378 atcgtcgtcgtcggggactgg 398
           || |||||| |||| ||||||
Sbjct: 256 attgtcgtcatcggagactgg 276

>dbj|AK106933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C05, full
            insert sequence
          Length = 1426

 Score =  264 bits (133), Expect = 2e-67
 Identities = 229/261 (87%)
 Strand = Plus / Plus

                                                                        
Query: 138  agggcggggcccggcgccgtcggtagcgccggcagcctcggcctccggatcgggcaggcc 197
            ||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 778  agggcgggggccggcgccgtcgggagcgccggcagcctcggcctccgcgtcgggcaggcc 837

                                                                        
Query: 198  gcctgctcgtcggcggcgctcatgttcatgtccgtcggcgtcgagttcttcagctacacg 257
            | || |||||||||| | ||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 838  gtcttctcgtcggcgtccctgctgttcatgtccgtcggcgtcgagttcttcagctatact 897

                                                                        
Query: 258  gccttctgcttcctggttacgatcatgggcctgctggtgccctggagctgcacgctcgcc 317
            |||||||||||||| ||||| || |||||| || || | ||||||||||| || ||||||
Sbjct: 898  gccttctgcttcctagttacaataatgggcttggtgatcccctggagctgtacactcgcc 957

                                                                        
Query: 318  atgatcgacgtgtactccatactcgtcgggtgcccgcttcacgtgcccggtgtcatggcc 377
            ||||||||||||||||||||||| || |||||||| ||||  || || |||||||||| |
Sbjct: 958  atgatcgacgtgtactccatacttgtagggtgccctcttcgggtaccaggtgtcatggtc 1017

                                 
Query: 378  atcgtcgtcgtcggggactgg 398
            || |||||| |||| ||||||
Sbjct: 1018 attgtcgtcatcggagactgg 1038

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  159 bits (80), Expect = 8e-36
 Identities = 116/128 (90%)
 Strand = Plus / Plus

                                                                            
Query: 138      agggcggggcccggcgccgtcggtagcgccggcagcctcggcctccggatcgggcaggcc 197
                ||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 31499164 agggcgggggccggcgccgtcgggagcgccggcagcctcggcctccgcgtcgggcaggcc 31499223

                                                                            
Query: 198      gcctgctcgtcggcggcgctcatgttcatgtccgtcggcgtcgagttcttcagctacacg 257
                | || |||||||||| | ||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 31499224 gtcttctcgtcggcgtccctgctgttcatgtccgtcggcgtcgagttcttcagctatact 31499283

                        
Query: 258      gccttctg 265
                ||||||||
Sbjct: 31499284 gccttctg 31499291



 Score =  107 bits (54), Expect = 3e-20
 Identities = 114/134 (85%)
 Strand = Plus / Plus

                                                                            
Query: 265      gcttcctggttacgatcatgggcctgctggtgccctggagctgcacgctcgccatgatcg 324
                ||||||| ||||| || |||||| || || | ||||||||||| || |||||||||||||
Sbjct: 31499594 gcttcctagttacaataatgggcttggtgatcccctggagctgtacactcgccatgatcg 31499653

                                                                            
Query: 325      acgtgtactccatactcgtcgggtgcccgcttcacgtgcccggtgtcatggccatcgtcg 384
                |||||||||||||||| || |||||||| ||||  || || |||||||||| ||| ||||
Sbjct: 31499654 acgtgtactccatacttgtagggtgccctcttcgggtaccaggtgtcatggtcattgtcg 31499713

                              
Query: 385      tcgtcggggactgg 398
                || |||| ||||||
Sbjct: 31499714 tcatcggagactgg 31499727

>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
             sequence
          Length = 133449

 Score =  159 bits (80), Expect = 8e-36
 Identities = 116/128 (90%)
 Strand = Plus / Minus

                                                                         
Query: 138   agggcggggcccggcgccgtcggtagcgccggcagcctcggcctccggatcgggcaggcc 197
             ||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 93432 agggcgggggccggcgccgtcgggagcgccggcagcctcggcctccgcgtcgggcaggcc 93373

                                                                         
Query: 198   gcctgctcgtcggcggcgctcatgttcatgtccgtcggcgtcgagttcttcagctacacg 257
             | || |||||||||| | ||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 93372 gtcttctcgtcggcgtccctgctgttcatgtccgtcggcgtcgagttcttcagctatact 93313

                     
Query: 258   gccttctg 265
             ||||||||
Sbjct: 93312 gccttctg 93305



 Score =  107 bits (54), Expect = 3e-20
 Identities = 114/134 (85%)
 Strand = Plus / Minus

                                                                         
Query: 265   gcttcctggttacgatcatgggcctgctggtgccctggagctgcacgctcgccatgatcg 324
             ||||||| ||||| || |||||| || || | ||||||||||| || |||||||||||||
Sbjct: 93002 gcttcctagttacaataatgggcttggtgatcccctggagctgtacactcgccatgatcg 92943

                                                                         
Query: 325   acgtgtactccatactcgtcgggtgcccgcttcacgtgcccggtgtcatggccatcgtcg 384
             |||||||||||||||| || |||||||| ||||  || || |||||||||| ||| ||||
Sbjct: 92942 acgtgtactccatacttgtagggtgccctcttcgggtaccaggtgtcatggtcattgtcg 92883

                           
Query: 385   tcgtcggggactgg 398
             || |||| ||||||
Sbjct: 92882 tcatcggagactgg 92869

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  159 bits (80), Expect = 8e-36
 Identities = 116/128 (90%)
 Strand = Plus / Plus

                                                                            
Query: 138      agggcggggcccggcgccgtcggtagcgccggcagcctcggcctccggatcgggcaggcc 197
                ||||||||| ||||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 31589680 agggcgggggccggcgccgtcgggagcgccggcagcctcggcctccgcgtcgggcaggcc 31589739

                                                                            
Query: 198      gcctgctcgtcggcggcgctcatgttcatgtccgtcggcgtcgagttcttcagctacacg 257
                | || |||||||||| | ||  |||||||||||||||||||||||||||||||||| || 
Sbjct: 31589740 gtcttctcgtcggcgtccctgctgttcatgtccgtcggcgtcgagttcttcagctatact 31589799

                        
Query: 258      gccttctg 265
                ||||||||
Sbjct: 31589800 gccttctg 31589807



 Score =  107 bits (54), Expect = 3e-20
 Identities = 114/134 (85%)
 Strand = Plus / Plus

                                                                            
Query: 265      gcttcctggttacgatcatgggcctgctggtgccctggagctgcacgctcgccatgatcg 324
                ||||||| ||||| || |||||| || || | ||||||||||| || |||||||||||||
Sbjct: 31590110 gcttcctagttacaataatgggcttggtgatcccctggagctgtacactcgccatgatcg 31590169

                                                                            
Query: 325      acgtgtactccatactcgtcgggtgcccgcttcacgtgcccggtgtcatggccatcgtcg 384
                |||||||||||||||| || |||||||| ||||  || || |||||||||| ||| ||||
Sbjct: 31590170 acgtgtactccatacttgtagggtgccctcttcgggtaccaggtgtcatggtcattgtcg 31590229

                              
Query: 385      tcgtcggggactgg 398
                || |||| ||||||
Sbjct: 31590230 tcatcggagactgg 31590243

>ref|XM_475891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1401

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 148 ccggcgccgtcggtagcgccggcagcctcg 177
           ||||||||| ||| ||||||||||||||||
Sbjct: 769 ccggcgccggcggcagcgccggcagcctcg 740

>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
             complete sequence
          Length = 144601

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 148   ccggcgccgtcggtagcgccggcagcctcg 177
             ||||||||| ||| ||||||||||||||||
Sbjct: 38862 ccggcgccggcggcagcgccggcagcctcg 38833

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 148      ccggcgccgtcggtagcgccggcagcctcg 177
                ||||||||| ||| ||||||||||||||||
Sbjct: 27442732 ccggcgccggcggcagcgccggcagcctcg 27442703

>gb|AF304577.1|AF304577 Amahuaka sp. Dietrich MEX01 28S ribosomal RNA gene, partial sequence
          Length = 3225

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 145  ggcccggcgccgtcggtagcgc 166
            ||||||||||||||||||||||
Sbjct: 2844 ggcccggcgccgtcggtagcgc 2865

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 195     gccgcctgctcgtcggcggcgctca 219
               ||||||| |||||||||||||||||
Sbjct: 3763228 gccgccttctcgtcggcggcgctca 3763204

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 371      catggccatcgtcgtcgtcgg 391
                |||||||||||||||||||||
Sbjct: 25477550 catggccatcgtcgtcgtcgg 25477530

>gb|AC004221.2|AC004221 Homo sapiens DNA from chromosome 19, cosmid R29144 (LLNLR-252D12) and
             overlapping PCR product, complete sequence
          Length = 42805

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 127   atcgcgggggcagggcggggcccgg 151
             |||||||||||||||||||| ||||
Sbjct: 27563 atcgcgggggcagggcgggggccgg 27587

>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0560B08
          Length = 128098

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 371   catggccatcgtcgtcgtcgg 391
             |||||||||||||||||||||
Sbjct: 14820 catggccatcgtcgtcgtcgg 14800

>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0552F09
          Length = 134659

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 371    catggccatcgtcgtcgtcgg 391
              |||||||||||||||||||||
Sbjct: 101267 catggccatcgtcgtcgtcgg 101247

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     gacgaggaaggcggcggctgcgtc 66
              |||||||||||||||||| |||||
Sbjct: 289542 gacgaggaaggcggcggcggcgtc 289519

>gb|AY458640.1| Uncultured bacterium 443 clone EBAC000-65D02 genomic sequence
          Length = 65204

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   gcgtcgagttcttcagctac 254
             ||||||||||||||||||||
Sbjct: 31137 gcgtcgagttcttcagctac 31118

>gb|AC124389.4| Mus musculus BAC clone RP24-429G21 from chromosome 1, complete sequence
          Length = 183428

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   ggggcagggcggggcccggcgccg 156
             |||| |||||||||||||||||||
Sbjct: 57666 gggggagggcggggcccggcgccg 57689

>gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complete sequence
          Length = 214280

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 133    ggggcagggcggggcccggcgccg 156
              |||| |||||||||||||||||||
Sbjct: 181703 gggggagggcggggcccggcgccg 181726

>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     gacgaggaaggcggcggctgcgtc 66
              |||||||||||||||||| |||||
Sbjct: 289428 gacgaggaaggcggcggcggcgtc 289405

>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   agcgccggcagcctcggcct 181
             ||||||||||||||||||||
Sbjct: 73261 agcgccggcagcctcggcct 73280

>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14
          Length = 343050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     gacgaggaaggcggcggctgcgtc 66
              |||||||||||||||||| |||||
Sbjct: 287752 gacgaggaaggcggcggcggcgtc 287729

>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    ccgcctgctcgtcggcggcg 215
              ||||||||||||||||||||
Sbjct: 286381 ccgcctgctcgtcggcggcg 286362

>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   tcatggccatcgtcgtcgtc 389
             ||||||||||||||||||||
Sbjct: 70190 tcatggccatcgtcgtcgtc 70171

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 370      tcatggccatcgtcgtcgtc 389
                ||||||||||||||||||||
Sbjct: 20966958 tcatggccatcgtcgtcgtc 20966939

>gb|AC079896.6| Homo sapiens BAC clone CTD-2507I16 from 2, complete sequence
          Length = 136791

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    catgggcctgctggtgccct 300
              ||||||||||||||||||||
Sbjct: 115072 catgggcctgctggtgccct 115091

>gb|AC022497.18| Homo sapiens 3 BAC RP11-80P20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147816

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   cggggcccggcgccgtcggt 161
             ||||||||||||||||||||
Sbjct: 88584 cggggcccggcgccgtcggt 88565

>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   gcggggcccggcgccgtcgg 160
             ||||||||||||||||||||
Sbjct: 48045 gcggggcccggcgccgtcgg 48026

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 164     cgccggcagcctcggcctcc 183
               ||||||||||||||||||||
Sbjct: 2327718 cgccggcagcctcggcctcc 2327699

>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04,
             complete sequence
          Length = 140890

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   tcatggccatcgtcgtcgtc 389
             ||||||||||||||||||||
Sbjct: 12364 tcatggccatcgtcgtcgtc 12345

>gb|AD000006.1|MSGY140 Mycobacterium tuberculosis sequence from clone y140
          Length = 40806

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   gacgaggaaggcggcggctgcgtc 66
            |||||||||||||||||| |||||
Sbjct: 7593 gacgaggaaggcggcggcggcgtc 7616


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,933,394
Number of Sequences: 3902068
Number of extensions: 2933394
Number of successful extensions: 68796
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68151
Number of HSP's gapped (non-prelim): 645
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)