>ref|NM_192090.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 214 cgccgccgcctacgcgtcatccgccgcggcggaggc 249
           |||||||||||||||||| |||||||||||| ||||
Sbjct: 141 cgccgccgcctacgcgtcgtccgccgcggcgcaggc 176

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 214      cgccgccgcctacgcgtcatccgccgcggcggaggc 249
                |||||||||||||||||| |||||||||||| ||||
Sbjct: 28271207 cgccgccgcctacgcgtcgtccgccgcggcgcaggc 28271242



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 84       cggccatggctacccgccgggccatctcgtcagtcctccgcgccgc 129
                |||||||||| |||||||||||| || | || ||||||||| ||||
Sbjct: 28271062 cggccatggcgacccgccgggccctcacctccgtcctccgctccgc 28271107

>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 214    cgccgccgcctacgcgtcatccgccgcggcggaggc 249
              |||||||||||||||||| |||||||||||| ||||
Sbjct: 105714 cgccgccgcctacgcgtcgtccgccgcggcgcaggc 105749



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 84     cggccatggctacccgccgggccatctcgtcagtcctccgcgccgc 129
              |||||||||| |||||||||||| || | || ||||||||| ||||
Sbjct: 105569 cggccatggcgacccgccgggccctcacctccgtcctccgctccgc 105614

>dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A02, full
           insert sequence
          Length = 2050

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 214 cgccgccgcctacgcgtcatccgccgcggcgg 245
           |||||||||||||||||| |||||||||||||
Sbjct: 252 cgccgccgcctacgcgtcgtccgccgcggcgg 283

>gb|BT018722.1| Zea mays clone EL01N0518D08.d mRNA sequence
          Length = 1977

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 tcaaccgcgccgccgcctacgcgtcatccgccgcggc 243
           |||||||||||||||||||||| ||  ||||||||||
Sbjct: 154 tcaaccgcgccgccgcctacgcctccgccgccgcggc 190

>gb|BT016806.1| Zea mays clone Contig639 mRNA sequence
          Length = 2139

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 tcaaccgcgccgccgcctacgcgtcatccgccgcggc 243
           |||||||||| ||||||||||| || |||||||||||
Sbjct: 174 tcaaccgcgctgccgcctacgcctcttccgccgcggc 210

>emb|X54233.1|ZMATP2MT Maize ATP2 mRNA for mitochondrial ATP synthase beta subunit
          Length = 2029

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 tcaaccgcgccgccgcctacgcgtcatccgccgcggc 243
           |||||||||| ||||||||||| || |||||||||||
Sbjct: 175 tcaaccgcgctgccgcctacgcctcttccgccgcggc 211

>gb|M36087.1|MZEMT2BATP Zea mays mitochondrial F-1-ATPase subunit 2 mRNA, complete cds;
           nuclear gene for mitochondrial product
          Length = 2054

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 tcaaccgcgccgccgcctacgcgtcatccgccgcggc 243
           |||||||||| ||||||||||| || |||||||||||
Sbjct: 127 tcaaccgcgctgccgcctacgcctcttccgccgcggc 163

>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 205   gctcaaccgcgccgccgcctacg 227
             |||||||||||||||||||||||
Sbjct: 10221 gctcaaccgcgccgccgcctacg 10199

>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 198    gcttcctgctcaaccgcgccg 218
              |||||||||||||||||||||
Sbjct: 187137 gcttcctgctcaaccgcgccg 187157

>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   gcttcctgctcaaccgcgccg 218
             |||||||||||||||||||||
Sbjct: 50970 gcttcctgctcaaccgcgccg 50950

>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   gcttcctgctcaaccgcgccg 218
             |||||||||||||||||||||
Sbjct: 62751 gcttcctgctcaaccgcgccg 62771

>gb|AC106786.2| Homo sapiens chromosome 5 clone RP11-359P5, complete sequence
          Length = 107238

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 236   gccgcggcggaggctgctccc 256
             |||||||||||||||||||||
Sbjct: 14425 gccgcggcggaggctgctccc 14405

>gb|AF025841.1| Homo sapiens acute myeloid leukemia 1 protein (AML1) gene, exons 5
            through 8 and partial cds, alternatively spliced
          Length = 11503

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  gcggaggctgctcccgtcac 261
            ||||||||||||||||||||
Sbjct: 7331 gcggaggctgctcccgtcac 7312

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 233     tccgccgcggcggaggctgc 252
               ||||||||||||||||||||
Sbjct: 2498012 tccgccgcggcggaggctgc 2497993

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 79     gttgccggccatggctacccgccgggcc 106
              ||||||| ||| ||||||||||||||||
Sbjct: 934467 gttgccgcccacggctacccgccgggcc 934440

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 195    ccggcttcctgctcaaccgcgccg 218
              |||||||||||||||||| |||||
Sbjct: 304748 ccggcttcctgctcaacctcgccg 304771

>emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1159F04, complete
              sequence
          Length = 158330

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      cctgccaccctttcccgtag 20
              ||||||||||||||||||||
Sbjct: 148404 cctgccaccctttcccgtag 148423

>emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011K22,
             complete sequence
          Length = 145766

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     cctgccaccctttcccgtag 20
             ||||||||||||||||||||
Sbjct: 18345 cctgccaccctttcccgtag 18364

>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
            complete sequence
          Length = 130521

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    cctgccaccctttcccgtag 20
            ||||||||||||||||||||
Sbjct: 8374 cctgccaccctttcccgtag 8393

>gb|AC011774.9| Homo sapiens chromosome 18, clone RP11-380C8, complete sequence
          Length = 208039

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    accatttcgataacctagat 68
             ||||||||||||||||||||
Sbjct: 14514 accatttcgataacctagat 14533

>gb|AC106037.9| Homo sapiens chromosome 18, clone RP11-13N13, complete sequence
          Length = 178029

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     accatttcgataacctagat 68
              ||||||||||||||||||||
Sbjct: 128060 accatttcgataacctagat 128079

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        cctgccaccctttcccgtag 20
                ||||||||||||||||||||
Sbjct: 15821809 cctgccaccctttcccgtag 15821828



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        cctgccaccctttcccgtag 20
                ||||||||||||||||||||
Sbjct: 15688415 cctgccaccctttcccgtag 15688434

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      gccgccactccccacctcgc 46
               ||||||||||||||||||||
Sbjct: 4177989 gccgccactccccacctcgc 4178008

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 214      cgccgccgcctacgcgtcatccgccgcg 241
                ||||||||||  ||||||||||||||||
Sbjct: 23162956 cgccgccgccgccgcgtcatccgccgcg 23162929

>dbj|AP000057.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 28/28, complete
              sequence
          Length = 107897

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    gcggaggctgctcccgtcac 261
              ||||||||||||||||||||
Sbjct: 100893 gcggaggctgctcccgtcac 100912

>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1126_D09
          Length = 138615

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 214    cgccgccgcctacgcgtcatccgccgcg 241
              ||||||||||  ||||||||||||||||
Sbjct: 129994 cgccgccgccgccgcgtcatccgccgcg 129967

>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1361_E02
          Length = 100168

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gccgccactccccacctcgc 46
             ||||||||||||||||||||
Sbjct: 61611 gccgccactccccacctcgc 61630

>dbj|BS000193.1| Pan troglodytes chromosome 22 clone:PTB-117K17, map 22, partial
             sequences, complete sequence
          Length = 124920

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gcggaggctgctcccgtcac 261
             ||||||||||||||||||||
Sbjct: 36993 gcggaggctgctcccgtcac 37012

>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1568_B05
          Length = 115325

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 214   cgccgccgcctacgcgtcatccgccgcg 241
             ||||||||||  ||||||||||||||||
Sbjct: 20187 cgccgccgccgccgcgtcatccgccgcg 20160

>gb|AF135398.1|AF135398 Thermus brockianus strain ITI360 putative galactoside binding protein
            (bdtE) gene, partial cds; and putative integral membrane
            protein (bdtF), putative integral membrane protein
            (bdtG), beta-galactosidase (bgaT), alpha-galactosidase
            (agaT), galactose-1-phosphate uridylyltransferase homolog
            (galT), glycerol kinase homolog (glpK), and glycerol
            dehydrogenase homolog (glpD) genes, complete cds
          Length = 10091

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  cacgccgccccccacctccg 278
            ||||||||||||||||||||
Sbjct: 6095 cacgccgccccccacctccg 6114

>dbj|AP001721.1| Homo sapiens genomic DNA, chromosome 21q, section 65/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    gcggaggctgctcccgtcac 261
              ||||||||||||||||||||
Sbjct: 142764 gcggaggctgctcccgtcac 142783

>gb|L23535.1|HUM21SEQQ Human (clone LA8) chromosome 21 sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 gcggaggctgctcccgtcac 261
           ||||||||||||||||||||
Sbjct: 430 gcggaggctgctcccgtcac 449

>gb|M97565.1|HUM21SEQJ Human (clone C22) chromosome 21 sequence
          Length = 888

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 gcggaggctgctcccgtcac 261
           ||||||||||||||||||||
Sbjct: 331 gcggaggctgctcccgtcac 312

>dbj|AP000331.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:PQ122C7/499A22, complete sequence
          Length = 64326

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gcggaggctgctcccgtcac 261
             ||||||||||||||||||||
Sbjct: 57484 gcggaggctgctcccgtcac 57503

>dbj|AP000172.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 8/9, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gcggaggctgctcccgtcac 261
             ||||||||||||||||||||
Sbjct: 91523 gcggaggctgctcccgtcac 91542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,333,963
Number of Sequences: 3902068
Number of extensions: 1333963
Number of successful extensions: 28712
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28435
Number of HSP's gapped (non-prelim): 277
length of query: 281
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 259
effective length of database: 17,147,199,772
effective search space: 4441124740948
effective search space used: 4441124740948
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)