>PTW3C_ECOLI (P09323) PTS system N-acetylglucosamine-specific EIICBA component|
           (EIICBA-Nag) (EII-Nag) [Includes: N-acetylglucosamine
           permease IIC component (PTS system
           N-acetylglucosamine-specific EIIC component);
           N-acetylglucosamine-specific phosphotrans
          Length = 648

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 220 SSKAASTGVTSAPVASGQTPPSYVVRAGLGSPAQPVLLALDTSADAA 360
           ++ A +T  T+APVA  Q  P+ V  A L SP    ++ALD   D A
Sbjct: 473 AASAEATPATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEA 519

>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (mCOP1)
          Length = 733

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
 Frame = +1

Query: 220 SSKAASTGVTSAPVASGQTPPSYVVRA---------------GLGSPAQPVLLALDTSAD 354
           SS A+S    S+ ++S  +PPS    A               GLG P +PVL+A   S  
Sbjct: 18  SSAASSVTSASSSLSSSPSPPSVAASAATLVSGGVAPAAGSGGLGGPGRPVLVAAAVSGS 77

Query: 355 AA 360
           A+
Sbjct: 78  AS 79

>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (hCOP1)
          Length = 731

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 15/54 (27%)
 Frame = +1

Query: 220 SSKAASTGVTSAPVASGQTPPSYVVRA---------------GLGSPAQPVLLA 336
           SS A+S    S+ ++S  +PPS  V A               GLG P +PVL+A
Sbjct: 18  SSAASSVTSASSSLSSSPSPPSVAVSAAALVSGGVAQAAGSGGLGGPVRPVLVA 71

>PRD_DROME (P06601) Segmentation protein paired|
          Length = 613

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +1

Query: 136 HNVHPPSASPLESIISXXXXXXXXXXFLSSKAASTGVTSAPVA-SGQTPPSYVVRAGLGS 312
           H   P + SP ES+ S           LS+  +  GVTS+  A SG  P   +  A  GS
Sbjct: 407 HQTMPRNESPNESVSSAFGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGS 466

Query: 313 PAQPVLLALDT 345
                 L +++
Sbjct: 467 EELSAALKVES 477

>PCX_DROME (P18490) Protein pecanex|
          Length = 3433

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 229  AASTGVTSAPVASGQTPPSYVVRAGLGSPAQPVLLA 336
            AA+ G +SAP  +G  PP+ V  A   S + P L A
Sbjct: 2375 AAAGGASSAPATAGVAPPAPVTPAHNDSKSTPNLSA 2410


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.122    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,788,339
Number of Sequences: 219361
Number of extensions: 180135
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)