ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast38c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE004794.1| Pseudomonas aeruginosa PAO1, section 355 of 529 o... 42 0.42
2gb|AC010038.5| Drosophila melanogaster 3L BAC RP98-14O14 (Roswel... 38 6.5
3gb|AC093192.2| Drosophila melanogaster 3L BAC RP98-48J18 (Roswel... 38 6.5
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
5dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
6dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
7gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 ... 38 6.5
8gb|AC004333.1|AC004333 Drosophila melanogaster DNA sequence (P1 ... 38 6.5

>gb|AE004794.1| Pseudomonas aeruginosa PAO1, section 355 of 529 of the complete
            genome
          Length = 13621

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 84   gcgccgaggtccgccatggac 104
            |||||||||||||||||||||
Sbjct: 8893 gcgccgaggtccgccatggac 8913



to top

>gb|AC010038.5| Drosophila melanogaster 3L BAC RP98-14O14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172175

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     gcagccacccactggagct 46
              |||||||||||||||||||
Sbjct: 155882 gcagccacccactggagct 155864



to top

>gb|AC093192.2| Drosophila melanogaster 3L BAC RP98-48J18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 166862

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    gcagccacccactggagct 46
             |||||||||||||||||||
Sbjct: 38872 gcagccacccactggagct 38890



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 119     cctcgccgtcgtcgcggcg 137
               |||||||||||||||||||
Sbjct: 7235836 cctcgccgtcgtcgcggcg 7235854



to top

>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0068B06
          Length = 143712

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    cctcgccgtcgtcgcggcg 137
              |||||||||||||||||||
Sbjct: 113247 cctcgccgtcgtcgcggcg 113265



to top

>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0052G07
          Length = 156207

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 119   cctcgccgtcgtcgcggcg 137
             |||||||||||||||||||
Sbjct: 70840 cctcgccgtcgtcgcggcg 70858



to top

>gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 of 83 of the complete
             sequence
          Length = 303191

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    gcagccacccactggagct 46
             |||||||||||||||||||
Sbjct: 30259 gcagccacccactggagct 30277



to top

>gb|AC004333.1|AC004333 Drosophila melanogaster DNA sequence (P1 DS05969 (D229)), complete
            sequence
          Length = 63178

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 28   gcagccacccactggagct 46
            |||||||||||||||||||
Sbjct: 2895 gcagccacccactggagct 2877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 593,885
Number of Sequences: 3902068
Number of extensions: 593885
Number of successful extensions: 45173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45119
Number of HSP's gapped (non-prelim): 54
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top