ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast37h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
2dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
3dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
4ref|XM_480882.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.085
5ref|XM_480883.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.085
6ref|NM_190897.1| Oryza sativa (japonica cultivar-group), predic... 46 0.085
7ref|NM_190895.1| Oryza sativa (japonica cultivar-group), predic... 46 0.085
8gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.085
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.085
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.085
11dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.085
12dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.085
13dbj|AK111059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.085
14dbj|AK059758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.085
15gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 46 0.085
16gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.34
19dbj|AK104507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
20dbj|AK067288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
21dbj|AK066677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
22gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
23gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.3
24gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.3
25gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.3
26emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.3
27emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.3
28emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.3
29emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 42 1.3
30gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.3
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.3
32gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
33dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.3
34dbj|AK104657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
35dbj|AK059739.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
36gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.3
37gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom... 40 5.3
38ref|XM_463110.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
39ref|NM_184593.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
40gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence 40 5.3
41gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.3
42gb|AY626367.1| Edwardsiella ictaluri clone pBK195CD hypothetical... 40 5.3
43gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.3
44gb|AF152394.2| Mycobacterium avium hypothetical protein, beta-la... 40 5.3
45emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.3
46emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.3
47emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 5.3
48emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 5.3
49emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 5.3
50gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 40 5.3
51emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 5.3
52emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete ... 40 5.3
53emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 40 5.3
54gb|AE012451.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.3
55gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.3
56gb|DQ360292.1| Mus musculus strain CAST/Ei C-X3-C chemokine rece... 40 5.3
57gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 40 5.3
58gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.3
59gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.3
60dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
61dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.3
62gb|AE005000.1| Halobacterium sp. NRC-1 section 31 of 170 of the ... 40 5.3
63gb|AY943952.1| Streptomyces sp. F11 plasmid pFP11, complete sequ... 40 5.3
64gb|AC110091.4| Mus musculus BAC clone RP24-87K15 from 9, complet... 40 5.3
65gb|AY106757.1| Zea mays PCO140977 mRNA sequence 40 5.3
66gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.3
67dbj|AB089611.1| Serratia marcescens comF, bioH, ORFX, ORF1, ORF2... 40 5.3
68gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.3
69gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.3
70emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosyn... 40 5.3
71emb|AJ271430.1|SSP271430 Shanorella spirotricha 5.8S rRNA gene, ... 40 5.3
72gb|M68877.1|SMASMFEFG Serratia marcescens adhesin (smfE, smfF, a... 40 5.3
73dbj|AB070946.1| Streptomyces avermitilis polyketide-8 biosynthet... 40 5.3 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  222 bits (112), Expect = 7e-55
 Identities = 205/236 (86%)
 Strand = Plus / Minus

                                                                            
Query: 113      cgacctggggaacatcggcgtgtgccacggccgcgtgggcggcaacctgccggcccctga 172
                ||||| ||| || |||||| | |||||||||||||| ||| ||||||| ||  | || | 
Sbjct: 20638176 cgacccgggcaagatcggcatttgccacggccgcgtcggcagcaaccttccacctccggc 20638117

                                                                            
Query: 173      ggcggccgcggcgctgctgaggagtaacgggatcgccaaggcgcggctcttcctccccga 232
                ||| || |||||| ||||||||   ||||||||| |||||||||||||||||||||||||
Sbjct: 20638116 ggccgcggcggcgttgctgaggcagaacgggatcaccaaggcgcggctcttcctccccga 20638057

                                                                            
Query: 233      cccggccgtgctcccggccttcgccgcggccggcatcgacctcaccgtcggcgtgcccaa 292
                |||||| ||||||||||| |||||||| ||||| ||||||||||  ||||||||||||||
Sbjct: 20638056 cccggcggtgctcccggcgttcgccgccgccgggatcgacctcatggtcggcgtgcccaa 20637997

                                                                        
Query: 293      cgagaacctcaccttcctctccgcgtccgggcccgacggcgcgctgcagtggctgc 348
                ||||||||||||||||||||||||  | ||||||||||||||||| | ||||||||
Sbjct: 20637996 cgagaacctcaccttcctctccgccgcggggcccgacggcgcgctccggtggctgc 20637941
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>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score =  222 bits (112), Expect = 7e-55
 Identities = 205/236 (86%)
 Strand = Plus / Minus

                                                                         
Query: 113   cgacctggggaacatcggcgtgtgccacggccgcgtgggcggcaacctgccggcccctga 172
             ||||| ||| || |||||| | |||||||||||||| ||| ||||||| ||  | || | 
Sbjct: 31787 cgacccgggcaagatcggcatttgccacggccgcgtcggcagcaaccttccacctccggc 31728

                                                                         
Query: 173   ggcggccgcggcgctgctgaggagtaacgggatcgccaaggcgcggctcttcctccccga 232
             ||| || |||||| ||||||||   ||||||||| |||||||||||||||||||||||||
Sbjct: 31727 ggccgcggcggcgttgctgaggcagaacgggatcaccaaggcgcggctcttcctccccga 31668

                                                                         
Query: 233   cccggccgtgctcccggccttcgccgcggccggcatcgacctcaccgtcggcgtgcccaa 292
             |||||| ||||||||||| |||||||| ||||| ||||||||||  ||||||||||||||
Sbjct: 31667 cccggcggtgctcccggcgttcgccgccgccgggatcgacctcatggtcggcgtgcccaa 31608

                                                                     
Query: 293   cgagaacctcaccttcctctccgcgtccgggcccgacggcgcgctgcagtggctgc 348
             ||||||||||||||||||||||||  | ||||||||||||||||| | ||||||||
Sbjct: 31607 cgagaacctcaccttcctctccgccgcggggcccgacggcgcgctccggtggctgc 31552
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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0515E01
          Length = 140063

 Score =  222 bits (112), Expect = 7e-55
 Identities = 205/236 (86%)
 Strand = Plus / Minus

                                                                          
Query: 113    cgacctggggaacatcggcgtgtgccacggccgcgtgggcggcaacctgccggcccctga 172
              ||||| ||| || |||||| | |||||||||||||| ||| ||||||| ||  | || | 
Sbjct: 103834 cgacccgggcaagatcggcatttgccacggccgcgtcggcagcaaccttccacctccggc 103775

                                                                          
Query: 173    ggcggccgcggcgctgctgaggagtaacgggatcgccaaggcgcggctcttcctccccga 232
              ||| || |||||| ||||||||   ||||||||| |||||||||||||||||||||||||
Sbjct: 103774 ggccgcggcggcgttgctgaggcagaacgggatcaccaaggcgcggctcttcctccccga 103715

                                                                          
Query: 233    cccggccgtgctcccggccttcgccgcggccggcatcgacctcaccgtcggcgtgcccaa 292
              |||||| ||||||||||| |||||||| ||||| ||||||||||  ||||||||||||||
Sbjct: 103714 cccggcggtgctcccggcgttcgccgccgccgggatcgacctcatggtcggcgtgcccaa 103655

                                                                      
Query: 293    cgagaacctcaccttcctctccgcgtccgggcccgacggcgcgctgcagtggctgc 348
              ||||||||||||||||||||||||  | ||||||||||||||||| | ||||||||
Sbjct: 103654 cgagaacctcaccttcctctccgccgcggggcccgacggcgcgctccggtggctgc 103599
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>ref|XM_480882.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 264

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 92  gctcgccgcggcggccggcgccg 114
           |||||||||||||||||||||||
Sbjct: 45  gctcgccgcggcggccggcgccg 67
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>ref|XM_480883.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 982

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 92  gctcgccgcggcggccggcgccg 114
           |||||||||||||||||||||||
Sbjct: 60  gctcgccgcggcggccggcgccg 82
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>ref|NM_190897.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  cctcgctgctcgccgcggcggcc 107
           |||||||||||||||||||||||
Sbjct: 839 cctcgctgctcgccgcggcggcc 861
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>ref|NM_190895.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 297

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  cctcgctgctcgccgcggcggcc 107
           |||||||||||||||||||||||
Sbjct: 263 cctcgctgctcgccgcggcggcc 285
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 38      cacagcggcagcggcgtcgccaa 60
               |||||||||||||||||||||||
Sbjct: 1950980 cacagcggcagcggcgtcgccaa 1950958



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      tcgccgcggcggccggcgcc 113
               ||||||||||||||||||||
Sbjct: 2936562 tcgccgcggcggccggcgcc 2936581
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 92      gctcgccgcggcggccggcgccg 114
               |||||||||||||||||||||||
Sbjct: 8405770 gctcgccgcggcggccggcgccg 8405792
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 85       cctcgctgctcgccgcggcggcc 107
                |||||||||||||||||||||||
Sbjct: 33702259 cctcgctgctcgccgcggcggcc 33702281



 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 85       cctcgctgctcgccgcggcggcc 107
                |||||||||||||||||||||||
Sbjct: 33692691 cctcgctgctcgccgcggcggcc 33692713
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>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1217_D10
          Length = 103188

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 92    gctcgccgcggcggccggcgccg 114
             |||||||||||||||||||||||
Sbjct: 21487 gctcgccgcggcggccggcgccg 21509
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>dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0699H05
          Length = 144850

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 85    cctcgctgctcgccgcggcggcc 107
             |||||||||||||||||||||||
Sbjct: 55329 cctcgctgctcgccgcggcggcc 55351



 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 85    cctcgctgctcgccgcggcggcc 107
             |||||||||||||||||||||||
Sbjct: 45761 cctcgctgctcgccgcggcggcc 45783
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>dbj|AK111059.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-D05, full
           insert sequence
          Length = 555

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  cctcgctgctcgccgcggcggcc 107
           |||||||||||||||||||||||
Sbjct: 306 cctcgctgctcgccgcggcggcc 328
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>dbj|AK059758.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E06, full
           insert sequence
          Length = 980

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 92  gctcgccgcggcggccggcgccg 114
           |||||||||||||||||||||||
Sbjct: 60  gctcgccgcggcggccggcgccg 82
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 82      tggcctcgctgctcgccgcggcggccggcgccgac 116
               ||||| |||||| |||||||||||||| |||||||
Sbjct: 3451514 tggccgcgctgcgcgccgcggcggccgacgccgac 3451480



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      cgcggcggccggcgccgacc 117
               ||||||||||||||||||||
Sbjct: 4349097 cgcggcggccggcgccgacc 4349116



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 87      tcgctgctcgccgcggcggccggcgccg 114
               |||||||| ||||| |||||||||||||
Sbjct: 2188537 tcgctgctggccgccgcggccggcgccg 2188510



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      cgccgcggcggccggcgccg 114
               ||||||||||||||||||||
Sbjct: 1926791 cgccgcggcggccggcgccg 1926772
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>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0061D06, complete sequence
          Length = 172126

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 93    ctcgccgcggcggccggcgccg 114
             ||||||||||||||||||||||
Sbjct: 93417 ctcgccgcggcggccggcgccg 93396



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    tgctcgccgcggcggccggcg 111
             |||||||||||||||||||||
Sbjct: 75116 tgctcgccgcggcggccggcg 75096
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 93      ctcgccgcggcggccggcgccg 114
               ||||||||||||||||||||||
Sbjct: 9656260 ctcgccgcggcggccggcgccg 9656281



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 91      tgctcgccgcggcggccggcg 111
               |||||||||||||||||||||
Sbjct: 9674561 tgctcgccgcggcggccggcg 9674581
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 80      cctggcctcgctgctcgccgcggcggccggcgcc 113
               |||||||  |||||||||||||||||||| ||||
Sbjct: 3497311 cctggcccggctgctcgccgcggcggccgacgcc 3497344



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 92      gctcgccgcggcggccggcgccgacctgg 120
               |||||||||||||| ||| ||||||||||
Sbjct: 2444120 gctcgccgcggcgggcggtgccgacctgg 2444092



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     gctgctcgccgcggcggccggcgc 112
              ||||||||||||||| ||||||||
Sbjct: 127379 gctgctcgccgcggccgccggcgc 127356
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>dbj|AK104507.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G07, full
           insert sequence
          Length = 938

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  ctcgccgcggcggccggcgccg 114
           ||||||||||||||||||||||
Sbjct: 49  ctcgccgcggcggccggcgccg 70
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>dbj|AK067288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100O03, full
           insert sequence
          Length = 896

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  ctcgccgcggcggccggcgccg 114
           ||||||||||||||||||||||
Sbjct: 64  ctcgccgcggcggccggcgccg 85
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>dbj|AK066677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071C10, full
           insert sequence
          Length = 954

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  ctcgccgcggcggccggcgccg 114
           ||||||||||||||||||||||
Sbjct: 53  ctcgccgcggcggccggcgccg 74
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 93      ctcgccgcggcggccggcgccg 114
               ||||||||||||||||||||||
Sbjct: 9727957 ctcgccgcggcggccggcgccg 9727978



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 91      tgctcgccgcggcggccggcg 111
               |||||||||||||||||||||
Sbjct: 9746258 tgctcgccgcggcggccggcg 9746278
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 92      gctcgccgcggcggccggcgccgac 116
               |||||||||| ||||||||||||||
Sbjct: 3223732 gctcgccgcgccggccggcgccgac 3223756
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 274     tcaccgtcggcgtgcccaacg 294
               |||||||||||||||||||||
Sbjct: 2104246 tcaccgtcggcgtgcccaacg 2104226
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 322    ggcccgacggcgcgctgcagt 342
              |||||||||||||||||||||
Sbjct: 282976 ggcccgacggcgcgctgcagt 282956



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      tgctcgccgcggcggccggc 110
               ||||||||||||||||||||
Sbjct: 2262683 tgctcgccgcggcggccggc 2262664
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   ccttcgccgcggccggcatcg 270
             |||||||||||||||||||||
Sbjct: 63971 ccttcgccgcggccggcatcg 63991
to top
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     tcgccgcggcggccggcgccg 114
              |||||||||||||||||||||
Sbjct: 277127 tcgccgcggcggccggcgccg 277147
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 322     ggcccgacggcgcgctgcagt 342
               |||||||||||||||||||||
Sbjct: 1608771 ggcccgacggcgcgctgcagt 1608751
to top
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 90    ctgctcgccgcggcggccggcgccg 114
             ||||||||||||||||||| |||||
Sbjct: 48222 ctgctcgccgcggcggccgccgccg 48246
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 259     cggccggcatcgacctcaccg 279
               |||||||||||||||||||||
Sbjct: 1322952 cggccggcatcgacctcaccg 1322972
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 311     ctccgcgtccgggcccgacgg 331
               |||||||||||||||||||||
Sbjct: 7173179 ctccgcgtccgggcccgacgg 7173159



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     ctcccggccttcgccgcggc 262
               ||||||||||||||||||||
Sbjct: 4527298 ctcccggccttcgccgcggc 4527279
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 93      ctcgccgcggcggccggcgccgacc 117
               ||||||||||| |||||||||||||
Sbjct: 3550478 ctcgccgcggccgccggcgccgacc 3550454



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 319     ccgggcccgacggcgcgctgc 339
               |||||||||||||||||||||
Sbjct: 2154749 ccgggcccgacggcgcgctgc 2154729



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 90      ctgctcgccgcggcggccggcgccgacc 117
               |||| |||||| ||||||||||||||||
Sbjct: 1836569 ctgcgcgccgccgcggccggcgccgacc 1836542



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 95      cgccgcggcggccggcgccg 114
               ||||||||||||||||||||
Sbjct: 1325837 cgccgcggcggccggcgccg 1325856
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 246     ccggccttcgccgcggccggcatcg 270
               |||| ||||||||||||||||||||
Sbjct: 5760544 ccggtcttcgccgcggccggcatcg 5760568
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>dbj|AK104657.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D03, full
           insert sequence
          Length = 1036

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 91  tgctcgccgcggcggccggcg 111
           |||||||||||||||||||||
Sbjct: 68  tgctcgccgcggcggccggcg 88
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>dbj|AK059739.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F02, full
           insert sequence
          Length = 1044

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 91  tgctcgccgcggcggccggcg 111
           |||||||||||||||||||||
Sbjct: 68  tgctcgccgcggcggccggcg 88
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 92      gctcgccgcggcggccggcgc 112
               |||||||||||||||||||||
Sbjct: 2008551 gctcgccgcggcggccggcgc 2008531
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>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
              sequence
          Length = 157397

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     cgccgcggcggccggcgccg 114
              ||||||||||||||||||||
Sbjct: 113593 cgccgcggcggccggcgccg 113612
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>ref|XM_463110.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  cgccgcggcggccggcgccg 114
           ||||||||||||||||||||
Sbjct: 216 cgccgcggcggccggcgccg 235
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>ref|NM_184593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 168 cctgaggcggccgcggcgctgctg 191
           |||| |||||||||||||||||||
Sbjct: 783 cctgcggcggccgcggcgctgctg 760
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>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence
          Length = 130987

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 239   cgtgctcccggccttcgccgcggccggcatcgacctcaccgtcggcgtgccc 290
             ||||||||  ||||||||||   ||||  ||||| |||||||||||||||||
Sbjct: 64375 cgtgctccgcgccttcgccggctccggggtcgacttcaccgtcggcgtgccc 64324
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 238    ccgtgctcccggccttcgccgcgg 261
              |||||||| |||||||||||||||
Sbjct: 477992 ccgtgctcacggccttcgccgcgg 478015
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>gb|AY626367.1| Edwardsiella ictaluri clone pBK195CD hypothetical protein genes,
            complete cds; and hypothetical protein gene, partial cds
          Length = 5094

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   gctcgccgcggcggccggcg 111
            ||||||||||||||||||||
Sbjct: 3921 gctcgccgcggcggccggcg 3940
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       cgccgcggcggccggcgccg 114
                ||||||||||||||||||||
Sbjct: 22554553 cgccgcggcggccggcgccg 22554534



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 168      cctgaggcggccgcggcgctgctg 191
                |||| |||||||||||||||||||
Sbjct: 14376994 cctgcggcggccgcggcgctgctg 14377017
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>gb|AF152394.2| Mycobacterium avium hypothetical protein, beta-lactamase-like protein
            (bllp), F420-dependent glucose-6-phosphate dehydrogenase
            (fgd), phospotransacetylase (pta), acetate kinase (ack),
            and hypothetical proteins genes, complete cds; and
            unknown gene
          Length = 7849

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   cgcggcggccggcgccgacc 117
            ||||||||||||||||||||
Sbjct: 5909 cgcggcggccggcgccgacc 5928
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>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gccgcggcggccggcgccga 115
             ||||||||||||||||||||
Sbjct: 58686 gccgcggcggccggcgccga 58667
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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 79     tcctggcctcgctgctcgccgcggcggccggc 110
              |||||||||||||||| || |||| |||||||
Sbjct: 197032 tcctggcctcgctgctggcggcggtggccggc 197063
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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gccgcggcggccggcgccga 115
             ||||||||||||||||||||
Sbjct: 11490 gccgcggcggccggcgccga 11471
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 79     tcctggcctcgctgctcgccgcggcggccggc 110
              |||||||||||||||| || |||| |||||||
Sbjct: 321077 tcctggcctcgctgctggcggcggtggccggc 321108
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gccgcggcggccggcgccga 115
              ||||||||||||||||||||
Sbjct: 128691 gccgcggcggccggcgccga 128672
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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 44      ggcagcggcgtcgccaatgcgttt 67
               ||||||||||||| ||||||||||
Sbjct: 1447876 ggcagcggcgtcggcaatgcgttt 1447899
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   gccacggccgcgtgggcggc 155
             ||||||||||||||||||||
Sbjct: 59692 gccacggccgcgtgggcggc 59673
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>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     gctgctcgccgcggcggccggcgc 112
              |||||||||| |||||||||||||
Sbjct: 213586 gctgctcgccccggcggccggcgc 213609
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     ctgctcgccgcggcggccgg 109
              ||||||||||||||||||||
Sbjct: 139729 ctgctcgccgcggcggccgg 139748
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>gb|AE012451.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 359
            of 460 of the complete genome
          Length = 10291

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 335  gctgcagtggctgcgctcgaacgg 358
            |||||||||||||||| |||||||
Sbjct: 5488 gctgcagtggctgcgcccgaacgg 5511
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     ggcgcgctgcagtggctgcg 349
               ||||||||||||||||||||
Sbjct: 1545010 ggcgcgctgcagtggctgcg 1545029
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>gb|DQ360292.1| Mus musculus strain CAST/Ei C-X3-C chemokine receptor 1 (Cx3cr1), C-C
              motif chemokine receptor 8 (Ccr8), ribosomal protein SA
              (Rpsa), and myelin-associated oligodendrocytic basic
              protein (Mobp) genes, complete cds
          Length = 200011

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     tcctcctggcctcgctgctc 95
              ||||||||||||||||||||
Sbjct: 176191 tcctcctggcctcgctgctc 176210
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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
              sequence
          Length = 158714

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 168    cctgaggcggccgcggcgctgctg 191
              |||| |||||||||||||||||||
Sbjct: 126223 cctgcggcggccgcggcgctgctg 126246
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 335    gctgcagtggctgcgctcgaacgg 358
              |||||||||||||||| |||||||
Sbjct: 996598 gctgcagtggctgcgcccgaacgg 996575
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      tgctcgccgcggcggccggc 110
               ||||||||||||||||||||
Sbjct: 1564351 tgctcgccgcggcggccggc 1564370
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       cgccgcggcggccggcgccg 114
                ||||||||||||||||||||
Sbjct: 22547582 cgccgcggcggccggcgccg 22547563



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 168      cctgaggcggccgcggcgctgctg 191
                |||| |||||||||||||||||||
Sbjct: 14371969 cctgcggcggccgcggcgctgctg 14371992
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 250     ccttcgccgcggccggcatc 269
               ||||||||||||||||||||
Sbjct: 2928836 ccttcgccgcggccggcatc 2928817
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>gb|AE005000.1| Halobacterium sp. NRC-1 section 31 of 170 of the complete genome
          Length = 11487

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 263  cggcatcgacctcaccgtcg 282
            ||||||||||||||||||||
Sbjct: 5581 cggcatcgacctcaccgtcg 5562
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>gb|AY943952.1| Streptomyces sp. F11 plasmid pFP11, complete sequence
          Length = 35159

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 74    cgtcctcctggcctcgctgctcgccgcg 101
             ||||||||||||| |||||||| |||||
Sbjct: 21173 cgtcctcctggccgcgctgctctccgcg 21146
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>gb|AC110091.4| Mus musculus BAC clone RP24-87K15 from 9, complete sequence
          Length = 222792

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     tcctcctggcctcgctgctc 95
              ||||||||||||||||||||
Sbjct: 131692 tcctcctggcctcgctgctc 131711
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>gb|AY106757.1| Zea mays PCO140977 mRNA sequence
          Length = 450

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  cgtcctcctggcctcgctgc 93
           ||||||||||||||||||||
Sbjct: 220 cgtcctcctggcctcgctgc 239
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 230     cgacccggccgtgctcccggcctt 253
               ||||||||||||||||| ||||||
Sbjct: 1608682 cgacccggccgtgctccaggcctt 1608659
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>dbj|AB089611.1| Serratia marcescens comF, bioH, ORFX, ORF1, ORF2, feoB genes, partial
            and complete cds
          Length = 2837

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   cagcggcagcggcgtcgcca 59
            ||||||||||||||||||||
Sbjct: 1909 cagcggcagcggcgtcgcca 1928
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      tcgccgcggcggccggcgcc 113
               ||||||||||||||||||||
Sbjct: 2347352 tcgccgcggcggccggcgcc 2347333
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 367     cggtccagtcgccggccggc 386
               ||||||||||||||||||||
Sbjct: 2449724 cggtccagtcgccggccggc 2449743
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>emb|AJ628421.2| Micromonospora olivasterospora fortimicin biosynthesis gene cluster,
            strain DSM 43868
          Length = 47238

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  cttcgccgcggccggcatcg 270
            ||||||||||||||||||||
Sbjct: 8053 cttcgccgcggccggcatcg 8072
to top
>emb|AJ271430.1|SSP271430 Shanorella spirotricha 5.8S rRNA gene, internal transcribed spacer
           1 (ITS1) and internal transcribed spacer 2 (ITS2),
           strain CBS 305.56
          Length = 617

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 48  gcggcgtcgccaatgcgtttcggc 71
           |||||||||||| |||||||||||
Sbjct: 474 gcggcgtcgccactgcgtttcggc 451
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>gb|M68877.1|SMASMFEFG Serratia marcescens adhesin (smfE, smfF, and smfG) genes, complete
            cds
          Length = 2251

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   ctggcctcgctgctcgccgc 100
            ||||||||||||||||||||
Sbjct: 1096 ctggcctcgctgctcgccgc 1077
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>dbj|AB070946.1| Streptomyces avermitilis polyketide-8 biosynthetic gene cluster
          Length = 24790

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ctcccggccttcgccgcggc 262
             ||||||||||||||||||||
Sbjct: 17368 ctcccggccttcgccgcggc 17387


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,659,343
Number of Sequences: 3902068
Number of extensions: 2659343
Number of successful extensions: 73925
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66794
Number of HSP's gapped (non-prelim): 7128
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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