ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast37g07 |
|---|---|
| Clone Library Name | barley_pub |
>FBX30_MOUSE (Q8BJL1) F-box only protein 30| Length = 746 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 12/54 (22%) Frame = +1 Query: 205 SLPSPLVTTNTNTSHSCIASRTEHGNPK------------SLLRRCAALYVPER 330 SLPS ++ TNT AS +H NP+ L+ C A Y P++ Sbjct: 463 SLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQ 516
>FBX30_RAT (Q5XI67) F-box only protein 30| Length = 742 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 12/54 (22%) Frame = +1 Query: 205 SLPSPLVTTNTNTSHSCIASRTEHGNPK------------SLLRRCAALYVPER 330 SLPS ++ TNT AS +H NP+ L+ C A Y P++ Sbjct: 459 SLPSAILATNTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQ 512
>LPRE_MYCTU (P65312) Putative lipoprotein lprE precursor| Length = 202 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 10 PAPPLSHPNPDSLWVAAPPS*VETSLPPCTVS 105 PAPP S P+P S A P + + PC V+ Sbjct: 51 PAPPSSEPSPPSATAAPPSNHSAAPVDPCAVN 82
>LPRE_MYCBO (P65313) Putative lipoprotein lprE precursor| Length = 202 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 10 PAPPLSHPNPDSLWVAAPPS*VETSLPPCTVS 105 PAPP S P+P S A P + + PC V+ Sbjct: 51 PAPPSSEPSPPSATAAPPSNHSAAPVDPCAVN 82
>YDIU_ECOLI (P77649) UPF0061 protein ydiU| Length = 478 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 203 RYIVSHYSVDATCQYQYWQSSNSGRSTSLVQQWETV 96 R+ SH + D +Y+ W S R+ SL+ QW+TV Sbjct: 202 RHYWSHLADDED-KYRLWFSDVVARTASLIAQWQTV 236
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 16 PPLSHPNPDSLWVAAPPS*VETSLPPCTVSHCCTKLVLRPEL 141 PP + P +PP+ T+LPP T S T L P + Sbjct: 1724 PPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSI 1765
>FBX30_HUMAN (Q8TB52) F-box only protein 30| Length = 745 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%) Frame = +1 Query: 205 SLPSPLVTTNTNTSHSCIASRTEHGNPK------------SLLRRCAALYVPER 330 SLPS ++ T+T AS +H NP+ L+ C A Y P++ Sbjct: 462 SLPSAILATSTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQ 515
>INVO_RAT (P48998) Involucrin| Length = 568 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +3 Query: 201 PLLALAISDHQHQHQPQLHCFKNRTWESKE 290 P L L HQ H+P+LH K + ES E Sbjct: 270 PELHLGKQQHQESHEPELHLGKQQHQESCE 299
>MURI_NEIMC (Q9RMM3) Glutamate racemase (EC 5.1.1.3)| Length = 270 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +1 Query: 220 LVTTNTNTSHSCIASRTEHGNPKSLLR-RCAALYVP--ERGW 336 ++ TNT + + A NP +L+R + A L VP E GW Sbjct: 119 IIATNTTVNSNAYARAIHRNNPDTLVRTQAAPLLVPLVEEGW 160
>MURI_NEIMB (P0A0R0) Glutamate racemase (EC 5.1.1.3)| Length = 270 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +1 Query: 220 LVTTNTNTSHSCIASRTEHGNPKSLLR-RCAALYVP--ERGW 336 ++ TNT + + A NP +L+R + A L VP E GW Sbjct: 119 IIATNTTVNSNAYARAIHRNNPDTLVRTQAAPLLVPLVEEGW 160
>MURI_NEIMA (P0A0Q9) Glutamate racemase (EC 5.1.1.3)| Length = 270 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +1 Query: 220 LVTTNTNTSHSCIASRTEHGNPKSLLR-RCAALYVP--ERGW 336 ++ TNT + + A NP +L+R + A L VP E GW Sbjct: 119 IIATNTTVNSNAYARAIHRNNPDTLVRTQAAPLLVPLVEEGW 160
>E41LB_HUMAN (Q9H329) Band 4.1-like protein 4B (EHM2 protein) (FERM-containing| protein CG1) Length = 913 Score = 23.1 bits (48), Expect(2) = 8.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 228 HQHQHQPQLHCFKNRTWESKE 290 HQHQHQ + + T E+KE Sbjct: 496 HQHQHQHHSNYSLSLTLENKE 516 Score = 22.7 bits (47), Expect(2) = 8.6 Identities = 9/17 (52%), Positives = 9/17 (52%) Frame = +3 Query: 201 PLLALAISDHQHQHQPQ 251 P L A H HQHQ Q Sbjct: 481 PFLTAASGRHHHQHQHQ 497
>YPHG_ECOLI (P76585) Hypothetical protein yphG| Length = 1124 Score = 27.3 bits (59), Expect = 9.4 Identities = 20/65 (30%), Positives = 31/65 (47%) Frame = -2 Query: 269 VLEAMQLWLVLVLVVTNGEGKERYIVSHYSVDATCQYQYWQSSNSGRSTSLVQQWETVQG 90 VL L LVL N + ++ Y ++AT +W + GRS S + QW + Sbjct: 636 VLCLHNLLLVLSGRQDNARVQREKLLRDYPLNATL---WWLNWFDGRSESALAQWRGLCQ 692 Query: 89 GREVS 75 GR+V+ Sbjct: 693 GRDVN 697
>JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1096 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +1 Query: 1 PLLPAPPLSHPNPDSLWVAAP 63 P LP PP P+ ++LW+ +P Sbjct: 464 PQLPPPPAHFPSEEALWLPSP 484
>LIN31_CAEEL (P34683) Protein lin-31 (Abnormal cell lineage protein 31)| Length = 237 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 1 PLLPAPPLSHPNPDSLWVAAPPS 69 PLLP PP++ P SL+ PPS Sbjct: 137 PLLPEPPITPPLLSSLFPNLPPS 159
>SRYA_DROSU (Q07965) Serendipity locus protein alpha| Length = 543 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -3 Query: 331 LSQAHTKQRNDEANSLDSH 275 LSQ H ++ ND++NSL+ H Sbjct: 116 LSQLHLQRANDQSNSLEDH 134
>SPS_ORYSA (Q43802) Sucrose-phosphate synthase (EC 2.4.1.14)| (UDP-glucose-fructose-phosphate glucosyltransferase) Length = 1049 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/59 (35%), Positives = 27/59 (45%) Frame = -3 Query: 223 LMARARRGI*CHITA*TQPVSISTGSPATPAAVLV*YSSGRQYREVEKSRPRMEEQPPI 47 L ARARRG+ CH + V I G + V S G ++ E + PR PPI Sbjct: 416 LRARARRGVSCHGRFMPRMVVIPPGMDFSSVVVPEDTSDGDDGKDFEIASPR--SLPPI 472 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,580,393 Number of Sequences: 219361 Number of extensions: 943654 Number of successful extensions: 2971 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2967 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
