ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast37e10 |
|---|---|
| Clone Library Name | barley_pub |
>HSP7C_TRYBB (P20030) Heat shock cognate HSP70 protein| Length = 676 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +2 Query: 116 PAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGH 220 PA + R+ RG+ + VHP V +G W+ H Sbjct: 348 PAVQAQLRELFRGKQLCSSVHPDEAVAYGAAWQAH 382
>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6| Length = 880 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +2 Query: 77 GDADNGNASTTPRPAARVHGRDRERGEDAD 166 G D G S TP P A H R+RER + + Sbjct: 529 GMPDAGGHSATPSPTAAYHKRERERERERE 558
>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2| Length = 959 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +2 Query: 83 ADNGNASTTPRPAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGHPQ 226 A+ A P+P AR ER +DA + P Q GRP G PQ Sbjct: 219 AEEEAAKRMPQPEAR-----SERRDDARPAPYGARPQQAGRPQGGRPQ 261
>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2| Length = 959 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +2 Query: 83 ADNGNASTTPRPAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGHPQ 226 A+ A P+P AR ER +DA + P Q GRP G PQ Sbjct: 219 AEEEAAKRMPQPEAR-----SERRDDARPAPYGARPQQAGRPQGGRPQ 261
>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2| Length = 959 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +2 Query: 83 ADNGNASTTPRPAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGHPQ 226 A+ A P+P AR ER +DA + P Q GRP G PQ Sbjct: 219 AEEEAAKRMPQPEAR-----SERRDDARPAPYGARPQQAGRPQGGRPQ 261
>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2| Length = 959 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +2 Query: 83 ADNGNASTTPRPAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGHPQ 226 A+ A P+P AR ER +DA + P Q GRP G PQ Sbjct: 219 AEEEAAKRMPQPEAR-----SERRDDARPAPYGARPQQAGRPQGGRPQ 261
>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor| Length = 688 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 113 RPAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGHP 223 RP ++G+D +RG PG P + GRP R P Sbjct: 627 RPGQAINGKDGDRGS-------PGAPGEAGRPGRPGP 656
>VIT1_PERAM (Q9U8M0) Vitellogenin 1 precursor (Vg-1)| Length = 1896 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = -1 Query: 304 QRRDGERRSVRGDGAHSRGTTPSQ----RLLRVAPPRPPML 194 QRR RRS+R D + S ++ + R LR PP P+L Sbjct: 401 QRRSRTRRSIRNDDSSSSSSSSEEDYQPRPLRGQPPNIPLL 441
>TOC75_ORYSA (Q84Q83) Protein TOC75, chloroplast precursor (75 kDa translocon at| the outer-envelope-membrane of chloroplasts) Length = 817 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/40 (40%), Positives = 17/40 (42%) Frame = +2 Query: 116 PAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGHPQQPL 235 P+ RV GR R A A H GHPQQPL Sbjct: 17 PSRRVRGRGRSTSVSAAASAS-----SHNSQPHGHPQQPL 51
>CHS2_RUTGR (Q9FSB8) Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone| synthase 2) Length = 393 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 306 EEAREPLHEGIDVGNVLGVGPGMPFAHALLR 398 EE R EG+D G + G GPG+ +LR Sbjct: 357 EEGRATTGEGLDWGVLFGFGPGLTVETVVLR 387
>CHS1_RUTGR (Q9FSB9) Chalcone synthase 1 (EC 2.3.1.74) (Naringenin-chalcone| synthase 1) Length = 393 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 306 EEAREPLHEGIDVGNVLGVGPGMPFAHALLR 398 EE R EG+D G + G GPG+ +LR Sbjct: 357 EEGRATTGEGLDWGVLFGFGPGLTVETVVLR 387
>RBL2_MOUSE (Q64700) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) Length = 1135 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/39 (35%), Positives = 15/39 (38%) Frame = +2 Query: 83 ADNGNASTTPRPAARVHGRDRERGEDADAGVHPGGPVQH 199 A GN S P PAA + E DA P G H Sbjct: 2 ASGGNQSPPPPPAAAASSEEEEEDGDAADRAQPAGSPSH 40
>GLYG4_SOYBN (P02858) Glycinin G4 precursor [Contains: Glycinin A5 subunit;| Glycinin A4 subunit; Glycinin B3 subunit] Length = 562 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/51 (29%), Positives = 20/51 (39%) Frame = +2 Query: 80 DADNGNASTTPRPAARVHGRDRERGEDADAGVHPGGPVQHGRPWRGHPQQP 232 D D PRP+ G+ + G+D D P + R WR QP Sbjct: 311 DEDEDEDEDKPRPSRPSQGKRNKTGQDEDEDEDEDQP-RKSREWRSKKTQP 360
>K0427_MOUSE (Q6PEE2) Protein KIAA0427 homolog| Length = 623 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = +2 Query: 113 RPAARVHGRDRERGEDADAGVHPGG-PVQHG 202 +P + H RD ++ +G HP G P HG Sbjct: 213 QPGSAKHNRDHQKSYQGGSGPHPSGRPTHHG 243 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,675,250 Number of Sequences: 219361 Number of extensions: 630767 Number of successful extensions: 3033 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2898 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3023 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
