ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast37b06 |
|---|---|
| Clone Library Name | barley_pub |
>TTG1_ARATH (Q9XGN1) TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein)| Length = 341 Score = 86.3 bits (212), Expect = 3e-17 Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 8/97 (8%) Frame = +2 Query: 140 AFTCELPHSIYALAFSP----SAPVLAAGSFLEDLHNRVSLLCFDSVHPTAASFRTVPSL 307 A T + P+ +YA+AFS S +A GSFLED +NR+ +L FDS T + +P+L Sbjct: 15 AVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTV---KPLPNL 71 Query: 308 SFDHPYPPTKLQFNP----RAASTPLLASSSDALRLW 406 SF+HPYPPTKL F+P R +S LLASS D LRLW Sbjct: 72 SFEHPYPPTKLMFSPPSLRRPSSGDLLASSGDFLRLW 108
>WDR68_MOUSE (P61963) WD-repeat protein 68 (WD-repeat protein An11 homolog)| Length = 342 Score = 52.8 bits (125), Expect = 4e-07 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%) Frame = +2 Query: 152 ELPHSIYALAFSPSAPV---LAAGSFLEDLHNRVSLLCFDSVHPTAASFRTVPSLSFDHP 322 E P ++YA+ +S LA GSF+E+ +N+V L+ D S + +FDHP Sbjct: 14 EAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDE-----ESSEFICRNTFDHP 68 Query: 323 YPPTKLQFNP--RAASTPLLASSSDALRLW 406 YP TKL + P + LLA+S D LR+W Sbjct: 69 YPTTKLMWIPDTKGVYPDLLATSGDYLRVW 98
>WDR68_HUMAN (P61962) WD-repeat protein 68 (WD-repeat protein An11 homolog)| Length = 342 Score = 52.8 bits (125), Expect = 4e-07 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%) Frame = +2 Query: 152 ELPHSIYALAFSPSAPV---LAAGSFLEDLHNRVSLLCFDSVHPTAASFRTVPSLSFDHP 322 E P ++YA+ +S LA GSF+E+ +N+V L+ D S + +FDHP Sbjct: 14 EAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQLVGLDE-----ESSEFICRNTFDHP 68 Query: 323 YPPTKLQFNP--RAASTPLLASSSDALRLW 406 YP TKL + P + LLA+S D LR+W Sbjct: 69 YPTTKLMWIPDTKGVYPDLLATSGDYLRVW 98
>PURL_THEMA (Q9X0X3) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 603 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 288 KEAAVGWTESKQRRETRLWRSSRKL 214 K AVGW + + RE LWR+ RKL Sbjct: 514 KVFAVGWNDFELEREKELWRAIRKL 538
>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 30.0 bits (66), Expect = 2.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 4 PAATGTSPPPNPHGTRGKPSIHGSAQA 84 P ATG + PP P G G P + G A A Sbjct: 1380 PGATGQAGPPGPVGPPGLPGLRGDAGA 1406
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 30.0 bits (66), Expect = 2.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 4 PAATGTSPPPNPHGTRGKPSIHGSAQA 84 P ATG + PP P G G P + G A A Sbjct: 1380 PGATGQAGPPGPVGPPGLPGLRGDAGA 1406
>INVSA_XENLA (Q71S22) Inversin-A| Length = 1007 Score = 29.6 bits (65), Expect = 3.4 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 315 SKEREGTVRKEAAVGWTESKQRRETRLWRSSR 220 +K+REG R++ VG TE KQ+ E + R + Sbjct: 590 AKKREGENRQKGKVGQTEGKQKDENHVMRQDK 621
>ARAA_BACSU (P94523) L-arabinose isomerase (EC 5.3.1.4)| Length = 496 Score = 29.3 bits (64), Expect = 4.4 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 15/71 (21%) Frame = -1 Query: 324 YGWSKEREGTVRKEAAVGWTESKQRRETRLW-------RSSRKLPAARTG--------AE 190 YG+ R G RK A W + + ++E W SR + AR G + Sbjct: 132 YGYINSRMGLSRKVIAGYWDDEEVKKEMSQWMDTAAALNESRHIKVARFGDNMRHVAVTD 191 Query: 189 GEKASA*IEWG 157 G+K A I++G Sbjct: 192 GDKVGAHIQFG 202
>CUC3A_HAECO (P16253) Cuticle collagen 3A3| Length = 295 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/29 (44%), Positives = 13/29 (44%) Frame = +1 Query: 4 PAATGTSPPPNPHGTRGKPSIHGSAQADA 90 P GT PP P G GKP G DA Sbjct: 176 PGQQGTKGPPGPPGIPGKPGESGEVGEDA 204
>ARAA_BACST (Q9S467) L-arabinose isomerase (EC 5.3.1.4)| Length = 496 Score = 28.5 bits (62), Expect = 7.6 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 15/73 (20%) Frame = -1 Query: 324 YGWSKEREGTVRKEAAVGWTESKQRRETRLW-------RSSRKLPAARTG--------AE 190 YG+ R G RK W + + R W SR L AR G E Sbjct: 133 YGFIGARMGVARKVVVGHWEDPEVRERLAKWMRTAVAFAESRNLKVARFGDNMREVAVTE 192 Query: 189 GEKASA*IEWGSS 151 G+K A I++G S Sbjct: 193 GDKVGAQIQFGWS 205
>CO6A2_CHICK (P15988) Collagen alpha-2(VI) chain precursor| Length = 1022 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +1 Query: 4 PAATGTSPPPNPHGTRGKPSIHGSAQA 84 P G S PP P G +G P I G+ A Sbjct: 375 PGRPGRSGPPGPPGEKGSPGIPGNPGA 401
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +1 Query: 1 SPAATGTSPPPNPHGTRGKPSIHG 72 +P G PP P G RG+P + G Sbjct: 395 APGEDGRPGPPGPQGARGQPGVMG 418
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +1 Query: 1 SPAATGTSPPPNPHGTRGKPSIHG 72 +P G PP P G RG+P + G Sbjct: 511 APGEDGRPGPPGPQGARGQPGVMG 534
>NR4A1_MOUSE (P12813) Orphan nuclear receptor NR4A1 (Orphan nuclear receptor| HMR) (Nuclear hormone receptor NUR/77) (N10 nuclear protein) Length = 601 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 296 VPSLSFDHPYPPTKLQFNPRAASTPLLASSSDALRLWHAP 415 +P S P PPT F+P +P LA SS L+L+ P Sbjct: 179 LPKASSGPPPPPTFFSFSPPTGPSPSLAQSS--LKLFPPP 216
>CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)| Length = 210 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +1 Query: 1 SPAATGTSPPPNPHGTRGKPSIHGSAQA 84 +P A G PP P G +G P G A A Sbjct: 81 NPGAPGNDAPPGPPGPKGPPGPPGKAGA 108
>GCM1_MOUSE (P70348) Chorion-specific transcription factor GCMa (Glial cells| missing homolog 1) (GCM motif protein 1) (mGCMa) (mGCM1) Length = 436 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 314 DHPYPPTKLQFNPRAASTPL-LASSSDALRLWHAP 415 DHP P TKL+ R A + +AS+S++LR+ P Sbjct: 153 DHPRPETKLEAEARRAMKKVHMASASNSLRMKGRP 187
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +1 Query: 1 SPAATGTSPPPNPHGTRGKPSIHG 72 +P G PP P G RG+P + G Sbjct: 512 APGEDGRPGPPGPQGARGQPGVMG 535
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +1 Query: 1 SPAATGTSPPPNPHGTRGKPSIHG 72 +P G PP P G RG+P + G Sbjct: 552 APGEDGRPGPPGPQGARGQPGVMG 575 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.307 0.128 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,070,017 Number of Sequences: 219361 Number of extensions: 576313 Number of successful extensions: 2862 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2851 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
