>dbj|AK065673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035D19, full
           insert sequence
          Length = 1317

 Score =  250 bits (126), Expect = 4e-63
 Identities = 251/292 (85%), Gaps = 3/292 (1%)
 Strand = Plus / Plus

                                                                       
Query: 186 aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 245
           ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 193 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 252

                                                                       
Query: 246 gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggtgaatagttgc 305
           ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||||||||||| 
Sbjct: 253 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggtgaatagttgt 309

                                                                       
Query: 306 accgggaaaatggggaagtctgttgctgaagcagctgtggctgctggtcttcagttagtt 365
           || ||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||
Sbjct: 310 actgggaaaatggggaaggctgttgctgaagcagctgtatctgctggtcttcagttagtt 369

                                                                       
Query: 366 ccggtctcattcagtgcaatagaggttcctgatggaaagcttaacatctgtgacagagac 425
           || || ||||||||||| || |||||||||||||||||| || | || ||||| || || 
Sbjct: 370 cctgtatcattcagtgctattgaggttcctgatggaaaggttgaaatttgtgatagggaa 429

                                                               
Query: 426 attcatattcatgatccatctgaaagtgaaagtattctccgttcgattgcta 477
           ||| |||||| ||| ||||||||| | ||||||||||||| |||||||||||
Sbjct: 430 atttatattcgtgacccatctgaaggagaaagtattctcccttcgattgcta 481

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  192 bits (97), Expect = 7e-46
 Identities = 163/185 (88%)
 Strand = Plus / Minus

                                                                            
Query: 293      ggtgaatagttgcaccgggaaaatggggaagtctgttgctgaagcagctgtggctgctgg 352
                |||||||||||| || ||||||||||||||| |||||||||||||||||||  |||||||
Sbjct: 14020970 ggtgaatagttgtactgggaaaatggggaaggctgttgctgaagcagctgtatctgctgg 14020911

                                                                            
Query: 353      tcttcagttagttccggtctcattcagtgcaatagaggttcctgatggaaagcttaacat 412
                ||||||||||||||| || ||||||||||| || |||||||||||||||||| || | ||
Sbjct: 14020910 tcttcagttagttcctgtatcattcagtgctattgaggttcctgatggaaaggttgaaat 14020851

                                                                            
Query: 413      ctgtgacagagacattcatattcatgatccatctgaaagtgaaagtattctccgttcgat 472
                 ||||| || || ||| |||||| ||| ||||||||| | ||||||||||||| ||||||
Sbjct: 14020850 ttgtgatagggaaatttatattcgtgacccatctgaaggagaaagtattctcccttcgat 14020791

                     
Query: 473      tgcta 477
                |||||
Sbjct: 14020790 tgcta 14020786



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                            
Query: 186      aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 245
                ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 14022608 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 14022549

                                                                  
Query: 246      gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggt 295
                ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||
Sbjct: 14022548 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggt 14022502

>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B05
          Length = 117057

 Score =  192 bits (97), Expect = 7e-46
 Identities = 163/185 (88%)
 Strand = Plus / Minus

                                                                         
Query: 293   ggtgaatagttgcaccgggaaaatggggaagtctgttgctgaagcagctgtggctgctgg 352
             |||||||||||| || ||||||||||||||| |||||||||||||||||||  |||||||
Sbjct: 90608 ggtgaatagttgtactgggaaaatggggaaggctgttgctgaagcagctgtatctgctgg 90549

                                                                         
Query: 353   tcttcagttagttccggtctcattcagtgcaatagaggttcctgatggaaagcttaacat 412
             ||||||||||||||| || ||||||||||| || |||||||||||||||||| || | ||
Sbjct: 90548 tcttcagttagttcctgtatcattcagtgctattgaggttcctgatggaaaggttgaaat 90489

                                                                         
Query: 413   ctgtgacagagacattcatattcatgatccatctgaaagtgaaagtattctccgttcgat 472
              ||||| || || ||| |||||| ||| ||||||||| | ||||||||||||| ||||||
Sbjct: 90488 ttgtgatagggaaatttatattcgtgacccatctgaaggagaaagtattctcccttcgat 90429

                  
Query: 473   tgcta 477
             |||||
Sbjct: 90428 tgcta 90424



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                         
Query: 186   aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 245
             ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 92246 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 92187

                                                               
Query: 246   gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggt 295
             ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||
Sbjct: 92186 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggt 92140

>dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1287_H05
          Length = 97812

 Score =  192 bits (97), Expect = 7e-46
 Identities = 163/185 (88%)
 Strand = Plus / Minus

                                                                        
Query: 293  ggtgaatagttgcaccgggaaaatggggaagtctgttgctgaagcagctgtggctgctgg 352
            |||||||||||| || ||||||||||||||| |||||||||||||||||||  |||||||
Sbjct: 2480 ggtgaatagttgtactgggaaaatggggaaggctgttgctgaagcagctgtatctgctgg 2421

                                                                        
Query: 353  tcttcagttagttccggtctcattcagtgcaatagaggttcctgatggaaagcttaacat 412
            ||||||||||||||| || ||||||||||| || |||||||||||||||||| || | ||
Sbjct: 2420 tcttcagttagttcctgtatcattcagtgctattgaggttcctgatggaaaggttgaaat 2361

                                                                        
Query: 413  ctgtgacagagacattcatattcatgatccatctgaaagtgaaagtattctccgttcgat 472
             ||||| || || ||| |||||| ||| ||||||||| | ||||||||||||| ||||||
Sbjct: 2360 ttgtgatagggaaatttatattcgtgacccatctgaaggagaaagtattctcccttcgat 2301

                 
Query: 473  tgcta 477
            |||||
Sbjct: 2300 tgcta 2296



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 91/110 (82%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                        
Query: 186  aggcggcggctgccagttgcgatgctttcgattactaacgccgtcgccagccagagccgc 245
            ||||||||| | ||| | |||| ||||||||| || |||||| |||| |||||||||| |
Sbjct: 4118 aggcggcggtttccaatggcgaggctttcgatcacgaacgccctcgctagccagagcctc 4059

                                                              
Query: 246  gagagcgcccccgcgtcggcacctcgcaagctctctttcccgatactggt 295
            ||||| ||||| ||| ||   |||| ||||| ||| ||||||||||||||
Sbjct: 4058 gagagtgcccctgcggcg---cctcccaagcactcgttcccgatactggt 4012

>dbj|AK102253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088H16, full
           insert sequence
          Length = 1559

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 277 tctctttcccgatactggtgaatagttgcaccgggaaaatgggg 320
           ||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 227 tctctttcccgatactggtgaatggatgcactggtaaaatgggg 270

>dbj|AK069529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019A15, full
           insert sequence
          Length = 2225

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 277 tctctttcccgatactggtgaatagttgcaccgggaaaatgggg 320
           ||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 145 tctctttcccgatactggtgaatggatgcactggtaaaatgggg 188

>dbj|AK059346.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C01, full
           insert sequence
          Length = 1371

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 277 tctctttcccgatactggtgaatagttgcaccgggaaaatgggg 320
           ||||||||||||||||||||||| | ||||| || |||||||||
Sbjct: 219 tctctttcccgatactggtgaatggatgcactggtaaaatgggg 262

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 441     ccatctgaaagtgaaagtatt 461
               |||||||||||||||||||||
Sbjct: 1988775 ccatctgaaagtgaaagtatt 1988795

>gb|AC160409.6| Mus musculus 10 BAC RP23-184O11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209766

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 319    ggaagtctgttgctgaagcag 339
              |||||||||||||||||||||
Sbjct: 142853 ggaagtctgttgctgaagcag 142873

>gb|AC048338.29| Homo sapiens 12 BAC RP11-512M8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186945

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 335   agcagctgtggctgctggtct 355
             |||||||||||||||||||||
Sbjct: 99643 agcagctgtggctgctggtct 99623

>gb|AC157016.3| Mus musculus 10 BAC RP24-505M19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 168538

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 319    ggaagtctgttgctgaagcag 339
              |||||||||||||||||||||
Sbjct: 138214 ggaagtctgttgctgaagcag 138234

>gb|DQ200356.1| Pseudomonas stutzeri OrfX gene, partial cds; nap operon, complete
            sequence; and Dcd (dcd) gene, partial cds
          Length = 5139

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  gcacggcgacgtcaaggcgg 191
            ||||||||||||||||||||
Sbjct: 1365 gcacggcgacgtcaaggcgg 1384

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     cgccgttcaccccgccaccg 117
              ||||||||||||||||||||
Sbjct: 467599 cgccgttcaccccgccaccg 467580

>gb|AC101834.8| Mus musculus chromosome 15, clone RP24-497O17, complete sequence
          Length = 135427

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    ctgaaagtgaaagtattctc 464
              ||||||||||||||||||||
Sbjct: 102376 ctgaaagtgaaagtattctc 102357

>ref|NM_001006407.1| Gallus gallus cell division cycle 40 homolog (S. cerevisiae) (CDC40),
            mRNA
          Length = 2068

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 396  gatggaaagcttaacatctg 415
            ||||||||||||||||||||
Sbjct: 1605 gatggaaagcttaacatctg 1624

>ref|XM_656881.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4369.2), mRNA
          Length = 3546

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    cagccgccgcgcaccacgct 26
            ||||||||||||||||||||
Sbjct: 3418 cagccgccgcgcaccacgct 3437

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     cgccgttcaccccgccaccg 117
              ||||||||||||||||||||
Sbjct: 125527 cgccgttcaccccgccaccg 125508

>gb|AC160756.7| Mus musculus chromosome 15, clone RP23-158H4, complete sequence
          Length = 194707

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    ctgaaagtgaaagtattctc 464
              ||||||||||||||||||||
Sbjct: 161033 ctgaaagtgaaagtattctc 161052

>emb|AJ719631.1| Gallus gallus mRNA for hypothetical protein, clone 4l13
          Length = 2068

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 396  gatggaaagcttaacatctg 415
            ||||||||||||||||||||
Sbjct: 1605 gatggaaagcttaacatctg 1624

>gb|AC015967.8| Homo sapiens chromosome 18, clone RP11-294N21, complete sequence
          Length = 186726

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   cagctgtggctgctggtctt 356
             ||||||||||||||||||||
Sbjct: 60874 cagctgtggctgctggtctt 60893

>gb|AC068513.8| Homo sapiens chromosome 18, clone RP11-659L20, complete sequence
          Length = 153873

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   cagctgtggctgctggtctt 356
             ||||||||||||||||||||
Sbjct: 76462 cagctgtggctgctggtctt 76481

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      cggcgacgtcaaggcggcgg 194
                ||||||||||||||||||||
Sbjct: 22845851 cggcgacgtcaaggcggcgg 22845870

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      cggcgacgtcaaggcggcgg 194
                ||||||||||||||||||||
Sbjct: 22774042 cggcgacgtcaaggcggcgg 22774061

>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    cggcgacgtcaaggcggcgg 194
              ||||||||||||||||||||
Sbjct: 110993 cggcgacgtcaaggcggcgg 110974

>gb|AC145954.3| Gallus gallus BAC clone CH261-13B2 from chromosome unknown, complete
              sequence
          Length = 192205

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 396    gatggaaagcttaacatctg 415
              ||||||||||||||||||||
Sbjct: 168889 gatggaaagcttaacatctg 168908


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,495,553
Number of Sequences: 3902068
Number of extensions: 3495553
Number of successful extensions: 69943
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69723
Number of HSP's gapped (non-prelim): 220
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)