ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast36h06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 648 Score = 172 bits (87), Expect = 4e-40 Identities = 177/207 (85%) Strand = Plus / Plus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct: 1 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccgcgccgag 60 Query: 124 gagaagacggggtacgtcgtcggcgcggcgcaggagaaggcgagggaggccaaggacacg 183 |||||||||||| | | | ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 61 gagaagacggggcgcatgatgggcacggcgcaggagaaggcgcgggaggccaaggacacg 120 Query: 184 gcatccgacgccgcgggccgcgccatggacaagggccgcggcgccgcagaagcgaccaag 243 || |||||||||||||| ||||| |||| || ||| | ||||||| || ||||||||| Sbjct: 121 gcgtccgacgccgcggggcgcgcgatgggcaggggacacggcgccaaggaggcgaccaag 180 Query: 244 gagaagggctacgaggccaaggacgcg 270 ||||||| |||||| ||||||||||| Sbjct: 181 gagaaggcgtacgagaccaaggacgcg 207 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 212 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 271 Query: 215 agggccgcggcgccgc 230 |||||||||||||||| Sbjct: 272 agggccgcggcgccgc 287 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 205 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 254
>dbj|AK064074.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H02, full insert sequence Length = 1006 Score = 172 bits (87), Expect = 4e-40 Identities = 177/207 (85%) Strand = Plus / Plus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct: 130 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccgcgccgag 189 Query: 124 gagaagacggggtacgtcgtcggcgcggcgcaggagaaggcgagggaggccaaggacacg 183 |||||||||||| | | | ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 190 gagaagacggggcgcatgatgggcacggcgcaggagaaggcgcgggaggccaaggacacg 249 Query: 184 gcatccgacgccgcgggccgcgccatggacaagggccgcggcgccgcagaagcgaccaag 243 || |||||||||||||| ||||| |||| || ||| | ||||||| || ||||||||| Sbjct: 250 gcgtccgacgccgcggggcgcgcgatgggcaggggacacggcgccaaggaggcgaccaag 309 Query: 244 gagaagggctacgaggccaaggacgcg 270 ||||||| |||||| ||||||||||| Sbjct: 310 gagaaggcgtacgagaccaaggacgcg 336 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 341 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 400 Query: 215 agggccgcggcgccgc 230 |||||||||||||||| Sbjct: 401 agggccgcggcgccgc 416 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 334 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 383
>dbj|D26536.1|RICWSI18 Oryza sativa (japonica cultivar-group) mRNA for WSI18 protein induced by water stress, complete cds Length = 978 Score = 172 bits (87), Expect = 4e-40 Identities = 177/207 (85%) Strand = Plus / Plus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct: 113 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccgcgccgag 172 Query: 124 gagaagacggggtacgtcgtcggcgcggcgcaggagaaggcgagggaggccaaggacacg 183 |||||||||||| | | | ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 173 gagaagacggggcgcatgatgggcacggcgcaggagaaggcgcgggaggccaaggacacg 232 Query: 184 gcatccgacgccgcgggccgcgccatggacaagggccgcggcgccgcagaagcgaccaag 243 || |||||||||||||| ||||| |||| || ||| | ||||||| || ||||||||| Sbjct: 233 gcgtccgacgccgcggggcgcgcgatgggcaggggacacggcgccaaggaggcgaccaag 292 Query: 244 gagaagggctacgaggccaaggacgcg 270 ||||||| |||||| ||||||||||| Sbjct: 293 gagaaggcgtacgagaccaaggacgcg 319 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 324 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 383 Query: 215 agggccgcg 223 ||||||||| Sbjct: 384 agggccgcg 392 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 317 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 366
>dbj|AK073837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070H10, full insert sequence Length = 996 Score = 165 bits (83), Expect = 9e-38 Identities = 176/207 (85%) Strand = Plus / Plus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||| ||||||| Sbjct: 128 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccacgccgag 187 Query: 124 gagaagacggggtacgtcgtcggcgcggcgcaggagaaggcgagggaggccaaggacacg 183 |||||||||||| | | | ||| ||||||||||||||||| ||||||||||||||||| Sbjct: 188 gagaagacggggcgcatgatgggcacggcgcaggagaaggcgcgggaggccaaggacacg 247 Query: 184 gcatccgacgccgcgggccgcgccatggacaagggccgcggcgccgcagaagcgaccaag 243 || |||||||||||||| ||||| |||| || ||| | ||||||| || ||||||||| Sbjct: 248 gcgtccgacgccgcggggcgcgcgatgggcaggggacacggcgccaaggaggcgaccaag 307 Query: 244 gagaagggctacgaggccaaggacgcg 270 ||||||| |||||| ||||||||||| Sbjct: 308 gagaaggcgtacgagaccaaggacgcg 334 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 339 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 398 Query: 215 agggccgcggcgccgc 230 |||||||||||||||| Sbjct: 399 agggccgcggcgccgc 414 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 332 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 381
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 149 cggcgcaggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgcca 208 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| | Sbjct: 29227186 cggcgcaggagaaggcgcgggaggccaaggacacggcgtccgacgccgcggggcgcgcga 29227127 Query: 209 tggacaagggccgcggcgccgcagaagcgaccaaggagaagggctacgaggccaaggacg 268 ||| || ||| | ||||||| || |||||||||||||||| |||||| ||||||||| Sbjct: 29227126 tgggcaggggacacggcgccaaggaggcgaccaaggagaaggcgtacgagaccaaggacg 29227067 Query: 269 cg 270 || Sbjct: 29227066 cg 29227065 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 29227060 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 29227001 Query: 215 agggccgcggcgccgc 230 |||||||||||||||| Sbjct: 29227000 agggccgcggcgccgc 29226985 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct: 29227384 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccgcgccgag 29227325 Query: 124 g 124 | Sbjct: 29227324 g 29227324 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 29227067 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 29227018
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 149 cggcgcaggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgcca 208 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| | Sbjct: 6049 cggcgcaggagaaggcgcgggaggccaaggacacggcgtccgacgccgcggggcgcgcga 5990 Query: 209 tggacaagggccgcggcgccgcagaagcgaccaaggagaagggctacgaggccaaggacg 268 ||| || ||| | ||||||| || |||||||||||||||| |||||| ||||||||| Sbjct: 5989 tgggcaggggacacggcgccaaggaggcgaccaaggagaaggcgtacgagaccaaggacg 5930 Query: 269 cg 270 || Sbjct: 5929 cg 5928 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 5923 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 5864 Query: 215 agggccgcggcgccgc 230 |||||||||||||||| Sbjct: 5863 agggccgcggcgccgc 5848 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct: 6247 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccgcgccgag 6188 Query: 124 g 124 | Sbjct: 6187 g 6187 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 5930 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 5881
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 149 cggcgcaggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgcca 208 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| | Sbjct: 72973 cggcgcaggagaaggcgcgggaggccaaggacacggcgtccgacgccgcggggcgcgcga 72914 Query: 209 tggacaagggccgcggcgccgcagaagcgaccaaggagaagggctacgaggccaaggacg 268 ||| || ||| | ||||||| || |||||||||||||||| |||||| ||||||||| Sbjct: 72913 tgggcaggggacacggcgccaaggaggcgaccaaggagaaggcgtacgagaccaaggacg 72854 Query: 269 cg 270 || Sbjct: 72853 cg 72852 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 72847 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 72788 Query: 215 agggccgcggcgccgc 230 |||||||||||||||| Sbjct: 72787 agggccgcggcgccgc 72772 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct: 73171 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccgcgccgag 73112 Query: 124 g 124 | Sbjct: 73111 g 73111 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 72854 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 72805
>dbj|AB001682.1| Oryza sativa DNA, cis-acting regulator of water stress specific gene Length = 2828 Score = 123 bits (62), Expect = 3e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 149 cggcgcaggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgcca 208 ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| | Sbjct: 1988 cggcgcaggagaaggcgcgggaggccaaggacacggcgtccgacgccgcggggcgcgcga 2047 Query: 209 tggacaagggccgcggcgccgcagaagcgaccaaggagaagggctacgaggccaaggacg 268 ||| || ||| | ||||||| || |||||||||||||||| |||||| ||||||||| Sbjct: 2048 tgggcaggggacacggcgccaaggaggcgaccaaggagaaggcgtacgagaccaaggacg 2107 Query: 269 cg 270 || Sbjct: 2108 cg 2109 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 155 aggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcgccatggaca 214 ||||||||||| ||||| |||||| |||| ||||||||| | |||||||||||||||| Sbjct: 2114 aggagaaggcgtacgaggcaaaggacgcggcctccgacgccaccggccgcgccatggaca 2173 Query: 215 agggccgcg 223 ||||||||| Sbjct: 2174 agggccgcg 2182 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 64 atggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccgag 123 |||||||||| ||||| | ||||||||||| |||||| ||| ||||| ||||||||||| Sbjct: 1792 atggcttctcagcaggaacgggctagctaccacgccggcgagaccaaggcccgcgccgag 1851 Query: 124 g 124 | Sbjct: 1852 g 1852 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 235 gcgaccaaggagaagggctacgaggccaaggacgcgtcgtcggacgccac 284 |||||||||||||||| |||||||| ||||||||| | || |||||||| Sbjct: 2107 gcgaccaaggagaaggcgtacgaggcaaaggacgcggcctccgacgccac 2156
>gb|BT023964.1| Zea mays clone EL01N0409B10 mRNA sequence Length = 1065 Score = 75.8 bits (38), Expect = 7e-11 Identities = 104/126 (82%) Strand = Plus / Plus Query: 86 ctagctaccgcgccggggaggccaagacccgcgccgaggagaagacggggtacgtcgtcg 145 ||||||||| |||||| ||| ||||| |||| ||||||||||||||||| | || | | Sbjct: 83 ctagctaccacgccggcgagaccaaggcccgtgccgaggagaagacgggtcaagtgatgg 142 Query: 146 gcgcggcgcaggagaaggcgagggaggccaaggacacggcatccgacgccgcgggccgcg 205 | |||||||||||||| | ||| ||||||||| ||| || |||||||||| | ||||| Sbjct: 143 gggcggcgcaggagaaagggagagaggccaagcacaaggagtccgacgccgacgaccgcg 202 Query: 206 ccatgg 211 |||||| Sbjct: 203 ccatgg 208
>dbj|AK119713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F03, full insert sequence Length = 968 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 101 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 160 Query: 123 ggagaagacgggg 135 ||||||| ||||| Sbjct: 161 ggagaaggcgggg 173
>gb|U57641.1|OSU57641 Oryza sativa LEA-like protein mRNA, embryo-specific clone Ose730, complete cds Length = 953 Score = 73.8 bits (37), Expect = 3e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 67 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 126 Query: 123 ggagaagacgggg 135 ||||||| ||||| Sbjct: 127 ggagaaggcgggg 139
>ref|XM_475821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 603 Score = 71.9 bits (36), Expect = 1e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 76 caggaccaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagacgggg 135 |||||||||||||||||||||||||| ||| ||||| ||| | ||||||||||| ||||| Sbjct: 13 caggaccaggctagctaccgcgccggcgagaccaaggcccacaccgaggagaaggcgggg 72
>emb|Z68090.1|OSLEA3X1 O.sativa mRNA for group 3 LEA (type I) protein Length = 966 Score = 69.9 bits (35), Expect = 4e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 82 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 141 Query: 123 ggagaag 129 ||||||| Sbjct: 142 ggagaag 148
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 101915 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 101974 Query: 123 gg 124 || Sbjct: 101975 gg 101976
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 2857 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 2916 Query: 123 gg 124 || Sbjct: 2917 gg 2918
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 26720918 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 26720977 Query: 123 gg 124 || Sbjct: 26720978 gg 26720979
>dbj|AB181485.1| Bromus inermis BiLEA1 mRNA for LEA protein, complete cds Length = 855 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 76 caggaccaggctagctaccgcgccggggaggccaagacccgcgccgaggagaag 129 |||||| |||| ||||||| |||||| ||||||||| ||||| ||||||||||| Sbjct: 92 caggacaaggcaagctaccacgccggcgaggccaaggcccgcaccgaggagaag 145
>dbj|AK063984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D08, full insert sequence Length = 1277 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 103 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 162 Query: 123 gg 124 || Sbjct: 163 gg 164
>gb|AF046884.1|AF046884 Oryza sativa group 3 LEA protein (lea) gene, complete cds Length = 3734 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 63 aatggcttctcgtcaggaccaggctagctaccgcgccggggaggccaagacccgcgccga 122 ||||||||| | |||||||||||||||||||||||||| ||| ||||| ||| | |||| Sbjct: 2332 aatggcttcccaccaggaccaggctagctaccgcgccggcgagaccaaggcccacaccga 2391 Query: 123 gg 124 || Sbjct: 2392 gg 2393
>gb|AY148492.1| Triticum aestivum LEA3 protein (LEA3) mRNA, complete cds Length = 776 Score = 56.0 bits (28), Expect = 6e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 80 accaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 ||||||| ||||||| |||||| ||| ||||| ||||| ||||||||||||| Sbjct: 17 accaggccagctaccacgccggcgagaccaaggcccgcaccgaggagaagac 68
>emb|Z29512.1|ZMLEAMGL3 Z.mays mRNA for group 3 Lea protein MGL3 Length = 1094 Score = 56.0 bits (28), Expect = 6e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 76 caggaccaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 |||||| |||||||||||| ||||| ||| ||||| ||||| ||||||||||||| Sbjct: 168 caggacaaggctagctaccaggccggcgagaccaaggcccgcaccgaggagaagac 223
>gb|AY104227.1| Zea mays PCO084365 mRNA sequence Length = 1024 Score = 56.0 bits (28), Expect = 6e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 76 caggaccaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 |||||| |||||||||||| ||||| ||| ||||| ||||| ||||||||||||| Sbjct: 179 caggacaaggctagctaccaggccggcgagaccaaggcccgcaccgaggagaagac 234
>dbj|D26552.1|MZEG3LP Zea mays mRNA for group 3 Lea protein MGL3, complete cds Length = 1094 Score = 56.0 bits (28), Expect = 6e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 76 caggaccaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 |||||| |||||||||||| ||||| ||| ||||| ||||| ||||||||||||| Sbjct: 168 caggacaaggctagctaccaggccggcgagaccaaggcccgcaccgaggagaagac 223
>gb|U05226.1|ZMU05226 Zea mays group 3 Lea protein MGL3 mRNA, complete cds Length = 1094 Score = 56.0 bits (28), Expect = 6e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 76 caggaccaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 |||||| |||||||||||| ||||| ||| ||||| ||||| ||||||||||||| Sbjct: 168 caggacaaggctagctaccaggccggcgagaccaaggcccgcaccgaggagaagac 223
>gb|AY148490.1| Triticum aestivum LEA1 protein (LEA1) mRNA, complete cds Length = 843 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Plus Query: 80 accaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 ||||||| ||||||| |||||| ||| ||||| ||||| |||||||||||| Sbjct: 40 accaggccagctaccacgccggcgagaccaaggcccgcaacgaggagaagac 91
>emb|X13498.1|HVABAIP Barley pHVA1 mRNA for an ABA-inducible protein Length = 997 Score = 48.1 bits (24), Expect = 0.015 Identities = 39/44 (88%) Strand = Plus / Plus Query: 88 agctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 ||||||| |||||| ||| ||||| ||||| ||||||||||||| Sbjct: 144 agctaccacgccggcgagaccaaggcccgcaccgaggagaagac 187
>emb|X56882.1|TA3LEA Wheat mRNA for a group 3 late embryogenesis abundant protein (LEA) Length = 934 Score = 48.1 bits (24), Expect = 0.015 Identities = 45/52 (86%) Strand = Plus / Plus Query: 80 accaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 ||||||| ||||||| |||||| ||| ||||| ||||| |||||||||||| Sbjct: 41 accaggccagctaccacgccggcgagaccaaggcccgcaacgaggagaagac 92
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 48.1 bits (24), Expect = 0.015 Identities = 24/24 (100%) Strand = Plus / Minus Query: 120 cgaggagaagacggggtacgtcgt 143 |||||||||||||||||||||||| Sbjct: 424440 cgaggagaagacggggtacgtcgt 424417
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.060 Identities = 23/23 (100%) Strand = Plus / Minus Query: 103 gaggccaagacccgcgccgagga 125 ||||||||||||||||||||||| Sbjct: 176271 gaggccaagacccgcgccgagga 176249 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 cgtcgtcggcgcggcgcagg 157 |||||||||||||||||||| Sbjct: 4177091 cgtcgtcggcgcggcgcagg 4177110
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 ggaggccaagacccgcgccgaggagaag 129 |||||||||||| ||||||| ||||||| Sbjct: 2217 ggaggccaagacgcgcgccggggagaag 2244
>gb|AC133207.3| Mus musculus BAC clone RP23-116L23 from chromosome 10, complete sequence Length = 222101 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atccagttctagtttctgca 24 |||||||||||||||||||| Sbjct: 87254 atccagttctagtttctgca 87235
>emb|X92496.1|ABGLNZ Azospirillum brasilense partial ubiH-like gene, glnZ gene, aat-like gene & partial ftsK-like gene Length = 4974 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ggaggccaagacccgcgccg 121 |||||||||||||||||||| Sbjct: 3984 ggaggccaagacccgcgccg 4003
>gb|AC004554.1| Homo sapiens X BAC GSHB-590J6 (Genome Systems Human BAC library) complete sequence Length = 195142 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tccagttctagtttctgcac 25 |||||||||||||||||||| Sbjct: 122396 tccagttctagtttctgcac 122415
>gb|AC087889.15| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-337L15, Complete Sequence, complete sequence Length = 215756 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atccagttctagtttctgca 24 |||||||||||||||||||| Sbjct: 148362 atccagttctagtttctgca 148343
>gb|AC016398.6| Homo sapiens chromosome 10 clone RP11-561G1, complete sequence Length = 158817 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 atccagttctagtttctgca 24 |||||||||||||||||||| Sbjct: 4538 atccagttctagtttctgca 4557
>gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complete sequence Length = 152326 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ctatccagttctagtttctg 22 |||||||||||||||||||| Sbjct: 74382 ctatccagttctagtttctg 74401
>gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complete sequence Length = 185556 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ctatccagttctagtttctg 22 |||||||||||||||||||| Sbjct: 140665 ctatccagttctagtttctg 140684
>gb|AF255052.1|AF255052 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab19) mRNA, complete cds Length = 698 Score = 40.1 bits (20), Expect = 3.7 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 accaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 ||||||| |||||| ||||| ||| ||||| ||||| ||||||||||||| Sbjct: 83 accaggcgagctacgcggccggcgagaccaaggcccgcaccgaggagaagac 134
>dbj|AB181486.1| Bromus inermis BiLEA2 mRNA for LEA protein, complete cds Length = 866 Score = 40.1 bits (20), Expect = 3.7 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 accaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 ||||||| |||||| ||||| ||| ||||| ||||| ||||||||||||| Sbjct: 112 accaggcgagctacaaagccggcgagaccaaggcccgcaccgaggagaagac 163
>gb|AF139915.1|AF139915 Triticum aestivum ABA-inducible protein WRAB1 mRNA, complete cds Length = 698 Score = 40.1 bits (20), Expect = 3.7 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 accaggctagctaccgcgccggggaggccaagacccgcgccgaggagaagac 131 ||||||| |||||| ||||| ||| ||||| ||||| ||||||||||||| Sbjct: 83 accaggcgagctacgcggccggcgagaccaaggcccgcaccgaggagaagac 134
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cgcagaagcgaccaaggaga 247 |||||||||||||||||||| Sbjct: 926693 cgcagaagcgaccaaggaga 926674
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ggagaagggctacgaggcca 262 |||||||||||||||||||| Sbjct: 227097 ggagaagggctacgaggcca 227078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,413,903 Number of Sequences: 3902068 Number of extensions: 2413903 Number of successful extensions: 38795 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38424 Number of HSP's gapped (non-prelim): 366 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
