ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast36g10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466311.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1251 Score = 147 bits (74), Expect = 2e-32 Identities = 157/182 (86%), Gaps = 2/182 (1%) Strand = Plus / Plus Query: 87 cggcacccgccgccgacgacgagctgctgcacgagttcggcccgctcctcagggtctaca 146 ||||| ||| || |||||||||| || | | ||||||||||||| ||||| ||||||||| Sbjct: 143 cggcagccgacggcgacgacgaggtggtacgcgagttcggcccgatcctccgggtctaca 202 Query: 147 agagcggccgcctggagcgccccctggt-gctcccgcccgtcgcgccgggtctcgacacc 205 ||||||||||||||||||||||||| || || ||| ||||||| ||||| | |||| || Sbjct: 203 agagcggccgcctggagcgccccctcgtcgcgccc-cccgtcggcccgggccacgacgcc 261 Query: 206 tccaccggcgtccagtccaaggacgtcgacctcggcgcctactccgcccgcctctacctg 265 ||||||||||||| ||| ||||||| ||||||||| ||||||||| |||||||||||| Sbjct: 262 gccaccggcgtccactcccgggacgtccacctcggcgactactccgcgcgcctctacctg 321 Query: 266 cc 267 || Sbjct: 322 cc 323
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 147 bits (74), Expect = 2e-32 Identities = 157/182 (86%), Gaps = 2/182 (1%) Strand = Plus / Plus Query: 87 cggcacccgccgccgacgacgagctgctgcacgagttcggcccgctcctcagggtctaca 146 ||||| ||| || |||||||||| || | | ||||||||||||| ||||| ||||||||| Sbjct: 21607302 cggcagccgacggcgacgacgaggtggtacgcgagttcggcccgatcctccgggtctaca 21607361 Query: 147 agagcggccgcctggagcgccccctggt-gctcccgcccgtcgcgccgggtctcgacacc 205 ||||||||||||||||||||||||| || || ||| ||||||| ||||| | |||| || Sbjct: 21607362 agagcggccgcctggagcgccccctcgtcgcgccc-cccgtcggcccgggccacgacgcc 21607420 Query: 206 tccaccggcgtccagtccaaggacgtcgacctcggcgcctactccgcccgcctctacctg 265 ||||||||||||| ||| ||||||| ||||||||| ||||||||| |||||||||||| Sbjct: 21607421 gccaccggcgtccactcccgggacgtccacctcggcgactactccgcgcgcctctacctg 21607480 Query: 266 cc 267 || Sbjct: 21607481 cc 21607482
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 147 bits (74), Expect = 2e-32 Identities = 157/182 (86%), Gaps = 2/182 (1%) Strand = Plus / Plus Query: 87 cggcacccgccgccgacgacgagctgctgcacgagttcggcccgctcctcagggtctaca 146 ||||| ||| || |||||||||| || | | ||||||||||||| ||||| ||||||||| Sbjct: 96252 cggcagccgacggcgacgacgaggtggtacgcgagttcggcccgatcctccgggtctaca 96311 Query: 147 agagcggccgcctggagcgccccctggt-gctcccgcccgtcgcgccgggtctcgacacc 205 ||||||||||||||||||||||||| || || ||| ||||||| ||||| | |||| || Sbjct: 96312 agagcggccgcctggagcgccccctcgtcgcgccc-cccgtcggcccgggccacgacgcc 96370 Query: 206 tccaccggcgtccagtccaaggacgtcgacctcggcgcctactccgcccgcctctacctg 265 ||||||||||||| ||| ||||||| ||||||||| ||||||||| |||||||||||| Sbjct: 96371 gccaccggcgtccactcccgggacgtccacctcggcgactactccgcgcgcctctacctg 96430 Query: 266 cc 267 || Sbjct: 96431 cc 96432
>dbj|AK105793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H09, full insert sequence Length = 1251 Score = 131 bits (66), Expect = 1e-27 Identities = 131/150 (87%), Gaps = 2/150 (1%) Strand = Plus / Plus Query: 119 gagttcggcccgctcctcagggtctacaagagcggccgcctggagcgccccctggt-gct 177 |||||||||||| ||||| ||| |||||||||||||||||||||||||||||| || || Sbjct: 175 gagttcggcccgatcctccgggcctacaagagcggccgcctggagcgccccctcgtcgcg 234 Query: 178 cccgcccgtcgcgccgggtctcgacacctccaccggcgtccagtccaaggacgtcgacct 237 ||| ||||||| ||||| | |||| || ||||||||||||| ||| ||||||| |||| Sbjct: 235 ccc-cccgtcggcccgggccacgacgccgccaccggcgtccactcccgggacgtccacct 293 Query: 238 cggcgcctactccgcccgcctctacctgcc 267 ||||| ||||||||| |||||||||||||| Sbjct: 294 cggcgactactccgcgcgcctctacctgcc 323
>gb|BT018514.1| Zea mays clone EL01N0430E04.d mRNA sequence Length = 1271 Score = 109 bits (55), Expect = 5e-21 Identities = 127/151 (84%) Strand = Plus / Plus Query: 118 cgagttcggcccgctcctcagggtctacaagagcggccgcctggagcgccccctggtgct 177 |||||||||||| || ||| || ||||||||||||||||| | ||||| | ||||| Sbjct: 125 cgagttcggcccactgctccggatctacaagagcggccgcatcgagcgggcggtggtggc 184 Query: 178 cccgcccgtcgcgccgggtctcgacacctccaccggcgtccagtccaaggacgtcgacct 237 ||||||||| | ||| || | |||| || |||| ||||||||||||||||||||| |||| Sbjct: 185 cccgcccgtggagcctggccacgacgccgccacgggcgtccagtccaaggacgtccacct 244 Query: 238 cggcgcctactccgcccgcctctacctgccc 268 |||| |||||||||| || |||||||||||| Sbjct: 245 cggctcctactccgcgcggctctacctgccc 275
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 265 gcccgcagccgccgcgaccaccac 288 |||||||||||||||||||||||| Sbjct: 22154964 gcccgcagccgccgcgaccaccac 22154987
>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0620D11 Length = 140245 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 265 gcccgcagccgccgcgaccaccac 288 |||||||||||||||||||||||| Sbjct: 72263 gcccgcagccgccgcgaccaccac 72286
>ref|XM_745764.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g09680) partial mRNA Length = 1261 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 cgccgacgacgagctgctgcacg 119 ||||||||||||||||||||||| Sbjct: 923 cgccgacgacgagctgctgcacg 901
>gb|AY838877.1| Aspergillus fumigatus putative gliotoxin biosynthetic gene cluster, complete sequence Length = 27768 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 cgccgacgacgagctgctgcacg 119 ||||||||||||||||||||||| Sbjct: 11512 cgccgacgacgagctgctgcacg 11490
>gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, complete sequence Length = 173479 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 acaaacacacagacacaagagc 36 |||||||||||||||||||||| Sbjct: 33654 acaaacacacagacacaagagc 33675
>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence Length = 209820 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 acaaacacacagacacaagagc 36 |||||||||||||||||||||| Sbjct: 184625 acaaacacacagacacaagagc 184646
>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence Length = 36153 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 83 gcaccggcacccgccgccgacgacgagctg 112 |||||||||| ||||||| ||||||||||| Sbjct: 8577 gcaccggcacgcgccgcccacgacgagctg 8606
>ref|NM_179924.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT2G35920 mRNA, complete cds Length = 3371 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 ccgcagccgccgcgaccaccacgacgacc 295 |||| ||||||||| |||||||||||||| Sbjct: 163 ccgccgccgccgcgtccaccacgacgacc 135
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccgacgacgagctgctgcacg 119 ||||||||||||||||||||| Sbjct: 141669 ccgacgacgagctgctgcacg 141649 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccgacgacgagctgctgcacg 119 ||||||||||||||||||||| Sbjct: 118021 ccgacgacgagctgctgcacg 118001
>gb|AC119880.11| Mus musculus chromosome 7, clone RP24-428H4, complete sequence Length = 187158 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 gaacaaacacacagacacaag 33 ||||||||||||||||||||| Sbjct: 136335 gaacaaacacacagacacaag 136355
>ref|XM_812647.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511211.190) partial mRNA Length = 1200 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 267 ccgcagccgccgcgaccaccacgac 291 ||||||||||||| ||||||||||| Sbjct: 55 ccgcagccgccgccaccaccacgac 31
>emb|Z93019.1|HS49C23 Human DNA sequence from clone RP1-49C23 on chromosome Xp11 Contains a malate dehydrogenase 1 NAD (soluble) (MDH1) pseudogene, complete sequence Length = 153078 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aacaaacacacagacacaaga 34 ||||||||||||||||||||| Sbjct: 4439 aacaaacacacagacacaaga 4459
>gb|AY070430.1| Arabidopsis thaliana At2g35920 mRNA sequence Length = 3304 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Minus Query: 267 ccgcagccgccgcgaccaccacgacgacc 295 |||| ||||||||| |||||||||||||| Sbjct: 163 ccgccgccgccgcgtccaccacgacgacc 135
>dbj|AB227526.1| Aspergillus oryzae cDNA, contig sequence: AoEST4395 Length = 686 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gccgccgcgaccaccacgacgacca 296 ||||||||||| ||||||||||||| Sbjct: 154 gccgccgcgacgaccacgacgacca 130
>dbj|AB226186.1| Aspergillus oryzae cDNA, contig sequence: AoEST3045 Length = 1121 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gccgccgcgaccaccacgacgacca 296 ||||||||||| ||||||||||||| Sbjct: 208 gccgccgcgacgaccacgacgacca 184
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 272 gccgccgcgaccaccacgacgacca 296 ||||||||||| ||||||||||||| Sbjct: 590772 gccgccgcgacgaccacgacgacca 590796
>gb|AC007017.4| Arabidopsis thaliana chromosome 2 clone F11F19 map g6825, complete sequence Length = 120938 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Plus Query: 267 ccgcagccgccgcgaccaccacgacgacc 295 |||| ||||||||| |||||||||||||| Sbjct: 81269 ccgccgccgccgcgtccaccacgacgacc 81297
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccgacgacgagctgctgcacg 119 ||||||||||||||||||||| Sbjct: 11355311 ccgacgacgagctgctgcacg 11355291 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccgacgacgagctgctgcacg 119 ||||||||||||||||||||| Sbjct: 11331663 ccgacgacgagctgctgcacg 11331643 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cacccgccgccgacgacgag 109 |||||||||||||||||||| Sbjct: 2474520 cacccgccgccgacgacgag 2474501
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ccgacgacgagctgctgcacg 119 ||||||||||||||||||||| Sbjct: 84 ccgacgacgagctgctgcacg 104
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccgacgacgagctgctgcacg 119 ||||||||||||||||||||| Sbjct: 11434500 ccgacgacgagctgctgcacg 11434480 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccgacgacgagctgctgcacg 119 ||||||||||||||||||||| Sbjct: 11410852 ccgacgacgagctgctgcacg 11410832 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cacccgccgccgacgacgag 109 |||||||||||||||||||| Sbjct: 2482256 cacccgccgccgacgacgag 2482237
>ref|XM_450946.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1712 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggcacccgccgccgacgacg 107 |||||||||||||||||||| Sbjct: 816 ggcacccgccgccgacgacg 797
>gb|AC162466.6| Mus musculus 6 BAC RP23-196O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186817 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gaacaaacacacagacacaa 32 |||||||||||||||||||| Sbjct: 106722 gaacaaacacacagacacaa 106741
>gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032M21 map C83B, complete sequence Length = 48636 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cacccgccgccgacgacgag 109 |||||||||||||||||||| Sbjct: 7622 cacccgccgccgacgacgag 7603
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cacccgccgccgacgacgag 109 |||||||||||||||||||| Sbjct: 126617 cacccgccgccgacgacgag 126598
>gb|AC157554.7| Mus musculus chromosome 15, clone RP24-324P21, complete sequence Length = 217353 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acaaacacacagacacaaga 34 |||||||||||||||||||| Sbjct: 6645 acaaacacacagacacaaga 6664
>gb|AC119839.8| Mus musculus chromosome 1, clone RP24-170N13, complete sequence Length = 165405 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cgaacaaacacacagacaca 31 |||||||||||||||||||| Sbjct: 66604 cgaacaaacacacagacaca 66585
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gcacccgccgccgacgacga 108 |||||||||||||||||||| Sbjct: 12999851 gcacccgccgccgacgacga 12999870 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cccgcagccgccgcgaccac 285 |||||||||||||||||||| Sbjct: 2255087 cccgcagccgccgcgaccac 2255068
>ref|XM_764164.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_305_49547_48717) partial mRNA Length = 831 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cgccgacgacgagctgctgc 116 |||||||||||||||||||| Sbjct: 302 cgccgacgacgagctgctgc 321
>gb|AC130806.58| Medicago truncatula clone mth2-19g23, complete sequence Length = 141498 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acaaacacacagacacaaga 34 |||||||||||||||||||| Sbjct: 55090 acaaacacacagacacaaga 55109
>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11, complete sequence Length = 156647 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cccgcagccgccgcgaccac 285 |||||||||||||||||||| Sbjct: 145381 cccgcagccgccgcgaccac 145362
>gb|AC153146.5| Mus musculus BAC clone RP23-217F11 from chromosome 8, complete sequence Length = 212278 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acaaacacacagacacaaga 34 |||||||||||||||||||| Sbjct: 98039 acaaacacacagacacaaga 98058
>emb|AJ438997.1|PHY438997 Pimpla hypochondriaca mRNA for cysteine-rich venom protein 6 (cvp6 gene) Length = 327 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cgccgcgaccaccacgacga 293 |||||||||||||||||||| Sbjct: 48 cgccgcgaccaccacgacga 29
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ctggagcgccccctggtgct 177 |||||||||||||||||||| Sbjct: 7026958 ctggagcgccccctggtgct 7026939
>dbj|AK128797.1| Homo sapiens cDNA FLJ45585 fis, clone BRTHA3013882 Length = 3813 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acaaacacacagacacaaga 34 |||||||||||||||||||| Sbjct: 241 acaaacacacagacacaaga 222
>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081A17, from chromosome 3, complete sequence Length = 134821 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cccgcagccgccgcgaccac 285 |||||||||||||||||||| Sbjct: 70969 cccgcagccgccgcgaccac 70988
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccgccgccgacgacgagctg 112 |||||||||||||||||||| Sbjct: 22568255 ccgccgccgacgacgagctg 22568236
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggcacccgccgccgacgacg 107 |||||||||||||||||||| Sbjct: 17728454 ggcacccgccgccgacgacg 17728435
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gcacccgccgccgacgacga 108 |||||||||||||||||||| Sbjct: 12996626 gcacccgccgccgacgacga 12996645 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cccgcagccgccgcgaccac 285 |||||||||||||||||||| Sbjct: 2255099 cccgcagccgccgcgaccac 2255080
>gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence Length = 96742 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcgacacctccaccggcgtc 217 |||||||||||||||||||| Sbjct: 43922 tcgacacctccaccggcgtc 43903
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 ccaaggacgtcgacctcggcgcct 245 |||||||| ||||||||||||||| Sbjct: 3587787 ccaaggacctcgacctcggcgcct 3587764
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gcacccgccgccgacgacga 108 |||||||||||||||||||| Sbjct: 77549 gcacccgccgccgacgacga 77568
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cgccgccgacgacgagctgc 113 |||||||||||||||||||| Sbjct: 5027031 cgccgccgacgacgagctgc 5027050
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggcacccgccgccgacgacg 107 |||||||||||||||||||| Sbjct: 37088 ggcacccgccgccgacgacg 37069
>emb|AJ242540.1|VCA242540 Volvox carteri mRNA for hydroxyproline-rich glycoprotein (HRGP gene) Length = 1230 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 gccgccgcgaccaccacgacgacc 295 |||||||||||||||||| ||||| Sbjct: 1122 gccgccgcgaccaccacgccgacc 1145
>dbj|AK110492.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-C01, full insert sequence Length = 2370 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gcacccgccgccgacgacga 108 |||||||||||||||||||| Sbjct: 1374 gcacccgccgccgacgacga 1355
>dbj|AK103478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130E19, full insert sequence Length = 1712 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggcacccgccgccgacgacg 107 |||||||||||||||||||| Sbjct: 816 ggcacccgccgccgacgacg 797
>dbj|AK100092.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003L18, full insert sequence Length = 2062 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cccgcagccgccgcgaccac 285 |||||||||||||||||||| Sbjct: 348 cccgcagccgccgcgaccac 329
>dbj|AK068968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002J01, full insert sequence Length = 2064 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cccgcagccgccgcgaccac 285 |||||||||||||||||||| Sbjct: 348 cccgcagccgccgcgaccac 329
>emb|BX247899.17| Zebrafish DNA sequence from clone CH211-229B6 in linkage group 19, complete sequence Length = 150160 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 agcgaacaaacacacagacacaag 33 |||||||||||||||| ||||||| Sbjct: 21827 agcgaacaaacacacacacacaag 21804
>dbj|AK060118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E10, full insert sequence Length = 1064 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cacccgccgccgacgacgag 109 |||||||||||||||||||| Sbjct: 36 cacccgccgccgacgacgag 55
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccgccgccgacgacgagctg 112 |||||||||||||||||||| Sbjct: 22496600 ccgccgccgacgacgagctg 22496581
>emb|AL583722.6|CNS07EFU Human chromosome 14 DNA sequence BAC R-982M15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 205928 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acaaacacacagacacaaga 34 |||||||||||||||||||| Sbjct: 72268 acaaacacacagacacaaga 72287
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ccgccgacgacgagctgctg 115 |||||||||||||||||||| Sbjct: 67564 ccgccgacgacgagctgctg 67583
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccgccgccgacgacgagctg 112 |||||||||||||||||||| Sbjct: 70834 ccgccgccgacgacgagctg 70815
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ccgccgccgacgacgagctg 112 |||||||||||||||||||| Sbjct: 13529 ccgccgccgacgacgagctg 13510
>emb|AJ543458.1|ASP543458 Acipenser sp. FR-2003 satellite DNA, clone EBD8173-15 Length = 218 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ctggagcgccccctggtgct 177 |||||||||||||||||||| Sbjct: 95 ctggagcgccccctggtgct 114
>gb|L27277.1|MLURHO Micrococcus luteus Rho factor (rho) gene, complete cds Length = 2402 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 267 ccgcagccgccgcgaccaccacgacgac 294 |||||||||||||||| ||| ||||||| Sbjct: 1067 ccgcagccgccgcgacgaccgcgacgac 1094
>emb|AL603843.15| Mouse DNA sequence from clone RP23-412D17 on chromosome 15, complete sequence Length = 203649 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acaaacacacagacacaaga 34 |||||||||||||||||||| Sbjct: 134588 acaaacacacagacacaaga 134607
>dbj|D00799.1|STMARGG Streptomyces coelicolor argG gene for argininosuccinate synthetase, complete cds Length = 2171 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ccgccgacgacgagctgctg 115 |||||||||||||||||||| Sbjct: 1728 ccgccgacgacgagctgctg 1747
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 ccaaggacgtcgacctcggcgcct 245 |||||||| ||||||||||||||| Sbjct: 50018 ccaaggacctcgacctcggcgcct 50041 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,263,622 Number of Sequences: 3902068 Number of extensions: 2263622 Number of successful extensions: 70070 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69079 Number of HSP's gapped (non-prelim): 986 length of query: 298 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 276 effective length of database: 17,147,199,772 effective search space: 4732627137072 effective search space used: 4732627137072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
