>PRAF1_CANFA (Q8HY39) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +3

Query: 225 ESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 362
           E   R  +  RPW+  VD+  FSRP +L +   RL RN+ Y++ NY
Sbjct: 33  ERLERRRATIRPWSSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNY 78

>PRAF1_HUMAN (Q9UI14) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +3

Query: 255 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 362
           RPW+  VD+  FSRP +L +   RL RN+ Y++ NY
Sbjct: 43  RPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNY 78

>PRAF1_RAT (O35394) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 255 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 362
           RPW   VD+  FSRP ++ +   RL RN+ Y++ NY
Sbjct: 43  RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNY 78

>PRAF1_MOUSE (Q9Z0S9) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
           (Prenylin)
          Length = 185

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 255 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 362
           RPW   VD+  FSRP ++ +   RL RN+ Y++ NY
Sbjct: 43  RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNY 78

>PRA1_SCHPO (Q9UUN5) PRA1-like protein|
          Length = 171

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 213 SRISESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 362
           S I  S  + LS  +   E +D    SRP + S+A SR+  N + F  NY
Sbjct: 16  SEIYASRAQYLSGFKSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSSNY 65

>BRO1_CRYNE (Q5KE13) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 957

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 23  PSRLLESTPRSAPDSAPHGFRADTAAPPPGHQP 121
           PSR   ++P  AP   P        APPPGH P
Sbjct: 888 PSRPTYASPPFAPQQPPMQSGHSPYAPPPGHAP 920

>BI3_HUMAN (O95415) Brain protein I3 (pRGR2)|
          Length = 125

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 2   PLVQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPPGHQPH 124
           PL+Q+  P+  LE+         PHG+ A  AAPPP   P+
Sbjct: 5   PLLQERPPAYNLEAGQGDYA-CGPHGYGAIPAAPPPPPYPY 44

>SUN1_CAEEL (Q20924) Sun domain protein 1|
          Length = 473

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   VQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPPGHQ 118
           +   K ++++ STP  AP++AP      TA+ PP  Q
Sbjct: 227 IDDAKSTKIIHSTPEKAPETAP------TASLPPSSQ 257

>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic|
           region
          Length = 409

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 2   PLVQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPP 109
           PLV++ +PSRL  S+P S P   P G  +    P P
Sbjct: 350 PLVRRDRPSRLDSSSPNSHPH--PSGLNSPKLPPLP 383

>BI3_MOUSE (P28662) Brain protein I3|
          Length = 125

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 2   PLVQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPPGHQPH 124
           PL+Q+  P+  LE+         PHG+ A   APPP   P+
Sbjct: 5   PLLQERPPAYNLEAGQGDYA-CGPHGYGAIPTAPPPPPYPY 44

>PRA1_YEAST (P53633) Prenylated Rab acceptor 1|
          Length = 176

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 225 ESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 362
           +S +  L+  R   E  +    S+P +  +  SR+  NL YF  NY
Sbjct: 27  QSFQSKLATLRTPQEFFNFKKISKPQNFGEVQSRVAYNLKYFSSNY 72

>FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1|
          Length = 959

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 2   PLVQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPPGHQP 121
           P +Q+ + +   E+ P  AP+ AP    AD AAPPP   P
Sbjct: 389 PALQEAEAATAAEA-PLPAPEPAP-AIEADDAAPPPPAVP 426

>KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 769

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/85 (22%), Positives = 29/85 (34%)
 Frame = +2

Query: 5   LVQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPPGHQPHXXXXXXXXXXXXXXXXXXAD 184
           + +Q  P +  +  PR     +P+  + D   PPP H  H                    
Sbjct: 550 MAKQKLPKKKNKHIPRPPQPGSPNYCKPDPPPPPPPHPHHGSGGI--------------- 594

Query: 185 RHAGVPPLHEPDLRVGAALAVRPAP 259
             +  PP+  P + V  A A  P P
Sbjct: 595 --SPPPPITPPSMGVNVAGAYPPGP 617

>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +2

Query: 23  PSRLLESTPRSAPDSAPHGFRADTAAPPPGHQP 121
           PS L    PRSAP   P     DTA P   H P
Sbjct: 240 PSPLSLPRPRSAPARRPPAPSGDTAPPARPHTP 272

>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
            (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
            (SH3P12)
          Length = 1290

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +2

Query: 35   LESTPRSAPDS----APHGFRADTAAPPPGHQPHXXXXXXXXXXXXXXXXXXADRHAGVP 202
            L+  PR  P S    +P G +AD     P  QPH                     H   P
Sbjct: 863  LQQHPRQPPPSDSSESPAGQKADLPCHDPQDQPHSAGKPQVPTRLSSRHTMARLSHNSEP 922

Query: 203  PLHEP 217
            PL  P
Sbjct: 923  PLDRP 927

>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)|
          Length = 1386

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +2

Query: 200 PPLHEPDLRVGAALAVRPAPVGRD 271
           PP  EP L VGA LAVR A V R+
Sbjct: 867 PPDLEPGLEVGAGLAVRLARVLRE 890

>BBR1_SCHCO (P78741) Pheromone B beta 1 receptor|
          Length = 541

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 53  SAPDSAPHGFRADTAAPPPGHQP 121
           S  DS PH   A  + PPP H P
Sbjct: 458 SPQDSLPHDIPAPPSLPPPTHMP 480


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,815,055
Number of Sequences: 219361
Number of extensions: 380090
Number of successful extensions: 1649
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)