ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast36a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 28 7.9

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 75  RSYAGTNSASRLRAGPRAMAPSKKVLMLCGDYMEDYEAAVPFYALAGLGVAVHCAAPGKA 254
           RS + ++S SR R+   +    +K+  +      D EAA    A A  G     AAPGK 
Sbjct: 287 RSPSESSSESRSRSRSPSPGREEKITFITSFGGSDEEAAAAAAAAAASG-----AAPGKP 341

Query: 255 PGDP 266
           P  P
Sbjct: 342 PAPP 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,332,831
Number of Sequences: 219361
Number of extensions: 448916
Number of successful extensions: 1638
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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